ggKbase home page

PLM3_127_b2_sep16_scaffold_1250

Search features with annotation key words

Displaying 16 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
PLM3_127_b2_sep16_scaffold_1250_1
GWC2_Nitrospirae_57_9_curated, Nitrospirae, Bacteria

Not on your lists

comp(2..709)
DNA (708bp) protein (236aa)
Oligopeptide transport system permease protein AppB bin=GWD2_Nitrospirae-related_57_8 species=Caldalkalibacillus thermarum genus=Caldalkalibacillus taxon_order=Bacillales taxon_class=Bacilli phylum=Firmicutes tax=GWD2_Nitrospirae-related_57_8 organism_group=Nitrospirae organism_desc=Many Proteobacteria hits
peptide ABC transporter
Tax=GWC2_Nitrospirae_57_9_curated
PLM3_127_b2_sep16_scaffold_1250_2
GWC2_Nitrospirae_57_9_curated, Nitrospirae, Bacteria

Not on your lists

comp(843..2459)
DNA (1617bp) protein (539aa)
Peptide ABC transporter, periplasmic peptide-binding lipoprotein bin=GWC2_Nitrospirae-rel_56_14 species=Pelobacter carbinolicus genus=Pelobacter taxon_order=Desulfuromonadales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWC2_Nitrospirae-rel_56_14 organism_group=Nitrospirae organism_desc=Pretty good; based on recA
peptide-binding protein
Tax=GWC2_Nitrospirae_57_9_curated
PLM3_127_b2_sep16_scaffold_1250_3
RBG_19FT_COMBO_Nitrospirae_55_12_curated, Nitrospirae, Bacteria

Not on your lists

comp(2510..4057)
DNA (1548bp) protein (516aa)
id=1884066 bin=GWD2_Nitrospirae-related_57_8 species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWD2_Nitrospirae-related_57_8 organism_group=Nitrospirae organism_desc=Many Proteobacteria hits
Tax=RBG_19FT_COMBO_Nitrospirae_55_12_curated
PLM3_127_b2_sep16_scaffold_1250_4
GWC2_Nitrospirae_57_13_curated, Nitrospirae, Bacteria

Not on your lists

comp(4054..5217)
DNA (1164bp) protein (388aa)
WD40 domain protein beta Propeller bin=GWC2_Nitrospirae_57_13 species=Thermobaculum terrenum genus=Thermobaculum taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWC2_Nitrospirae_57_13 organism_group=Nitrospirae organism_desc=Same as C1_57_7 and D2_57_8
WD40-like beta Propeller containing protein
Tax=GWC2_Nitrospirae_57_13_curated
PLM3_127_b2_sep16_scaffold_1250_5
GWC2_Nitrospirae_57_13_curated, Nitrospirae, Bacteria

Not on your lists

comp(5251..7818)
DNA (2568bp) protein (856aa)
id=4736578 bin=GWC2_Nitrospirae_57_13 species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWC2_Nitrospirae_57_13 organism_group=Nitrospirae organism_desc=Same as C1_57_7 and D2_57_8
Tax=GWC2_Nitrospirae_57_13_curated
PLM3_127_b2_sep16_scaffold_1250_6
GWC2_Nitrospirae_57_13_curated, Nitrospirae, Bacteria

Not on your lists

comp(7873..8313)
DNA (441bp) protein (147aa)
id=2103040 bin=GWD2_Nitrospirae-related_57_8 species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWD2_Nitrospirae-related_57_8 organism_group=Nitrospirae organism_desc=Many Proteobacteria hits
Tax=GWC2_Nitrospirae_57_13_curated
PLM3_127_b2_sep16_scaffold_1250_7
R_Betaproteobacteria_67_26, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(8686..9885)
DNA (1200bp) protein (400aa)
hypothetical protein Tax=Frankia sp. BMG5.12 RepID=UPI000377DAC2
FAD-binding monooxygenase
Tax=RIFCSPLOWO2_02_FULL_Betaproteobacteria_67_26_curated
PLM3_127_b2_sep16_scaffold_1250_8
RIFCSPLOWO2_12_FULL_Betaproteobacteria_65_14_curated, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(9905..12997)
DNA (3093bp) protein (1031aa)
hypothetical protein Tax=Pseudaminobacter salicylatoxidans RepID=UPI000304D08B
putative Acriflavin resistance protein
Tax=RIFCSPLOWO2_12_FULL_Betaproteobacteria_65_14_curated
PLM3_127_b2_sep16_scaffold_1250_9
RIFCSPLOWO2_12_FULL_Betaproteobacteria_65_14_curated, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(13011..14144)
DNA (1134bp) protein (378aa)
Acriflavin resistance protein E probable RND efflux membrane fusion protein Tax=Mariprofundus ferrooxydans PV-1 RepID=Q0EZY4_9PROT
RND family efflux transporter MFP subunit
Tax=RIFCSPLOWO2_12_FULL_Betaproteobacteria_65_14_curated
PLM3_127_b2_sep16_scaffold_1250_10
RIFCSPLOWO2_12_FULL_Betaproteobacteria_65_14_curated, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(14181..15677)
DNA (1497bp) protein (499aa)
RND efflux system, outer membrane lipoprotein, NodT family bin=GWC2_Syntrophobacterales_56_13 species=Geobacter uraniireducens genus=Geobacter taxon_order=Desulfuromonadales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWC2_Syntrophobacterales_56_13 organism_group=Deltaproteobacteria organism_desc=Good +
RND efflux system outer membrane lipoprotein
Tax=RIFCSPLOWO2_12_FULL_Betaproteobacteria_65_14_curated
PLM3_127_b2_sep16_scaffold_1250_11
BJP_IG2069_Syntrophobacterales_46_30, Syntrophobacterales, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(15674..16345)
DNA (672bp) protein (224aa)
Putative transcriptional regulator, TetR family Tax=Streptosporangium roseum (strain ATCC 12428 / DSM 43021 / JCM 3005 / NI 9100) RepID=D2BBV3_STRRD
TetR family transcriptional regulator
Tax=BJP_IG2069_Syntrophobacterales_46_30
PLM3_127_b2_sep16_scaffold_1250_12
R_Betaproteobacteria_64_14, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(16464..16949)
DNA (486bp) protein (162aa)
Uncharacterized protein Tax=Thauera sp. 63 RepID=N6YA19_9RHOO
cytochrome c
Tax=RIFCSPLOWO2_02_Betaproteobacteria_64_14_curated
PLM3_127_b2_sep16_scaffold_1250_13
RBG_16_Betaproteobacteria_64_18_curated, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(16961..18472)
DNA (1512bp) protein (504aa)
Serine:pyruvate/alanine:glyoxylate aminotransferase Tax=mine drainage metagenome RepID=T1AAE5_9ZZZZ
serine-pyruvate transaminase
Tax=RBG_16_Betaproteobacteria_64_18_curated
PLM3_127_b2_sep16_scaffold_1250_14
R_Acidobacteria_59_13, Acidobacteria, Bacteria

Not on your lists

comp(18550..19020)
DNA (471bp) protein (157aa)
Uncharacterized protein Tax=Alicycliphilus denitrificans (strain DSM 18852 / JCM 14587 / BC) RepID=E8TSP2_ALIDB
hypothetical protein
Tax=RIFCSPLOWO2_02_FULL_Acidobacteria_59_13_curated
PLM3_127_b2_sep16_scaffold_1250_15
unknown

Not on your lists

19056..19214
DNA (159bp) protein (53aa)

This feature has no annotations

PLM3_127_b2_sep16_scaffold_1250_16
Sphaerobacter thermophilus, Sphaerobacter, Sphaerobacterales, Sphaerobacteridae, Chloroflexi, Bacteria

Not on your lists

comp(19616..20077)
DNA (462bp) protein (154aa)
Uncharacterized protein Tax=Sphaerobacter thermophilus (strain DSM 20745 / S 6022) RepID=D1C4W2_SPHTD
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ACZ39279.1}; species="Bacteria; Chloroflexi; Sphaerobacteridae; Sphaerobacterales; Sphaerobacterineae; Sphaerobacteraceae; Sphaerobacter.;" source="Sphaerobacter thermophilus (strain DSM 20745 / S 6022).;"
Displaying 16 items

View Taxonomy