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PLM3_127_b2_sep16_scaffold_561

Search features with annotation key words

Displaying items 1-30 of 38 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
PLM3_127_b2_sep16_scaffold_561_1
R_Betaproteobacteria_65_24, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

3..638
DNA (636bp) protein (212aa)
Crotonase Tax=Ralstonia pickettii DTP0602 RepID=U3QNX2_RALPI
boxC; benzoyl-CoA-dihydrodiol lyase
Tax=RIFCSPLOWO2_02_FULL_Betaproteobacteria_65_24_curated
PLM3_127_b2_sep16_scaffold_561_2
RIFCSPLOWO2_12_FULL_Betaproteobacteria_64_23_curated, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

641..2071
DNA (1431bp) protein (477aa)
Candidate benzoyl-CoA oxygenase component B Tax=Ramlibacter tataouinensis (strain ATCC BAA-407 / DSM 14655 / LMG 21543 / TTB310) RepID=F5XZW6_RAMTT
benzoyl-CoA oxygenase component B
Tax=RIFCSPLOWO2_12_FULL_Betaproteobacteria_64_23_curated
PLM3_127_b2_sep16_scaffold_561_3
R_Betaproteobacteria_65_24, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

2152..3372
DNA (1221bp) protein (407aa)
Sulfite oxidase Tax=Oceanibaculum indicum P24 RepID=K2KMM7_9PROT
sulfite oxidase and related enzyme
Tax=RIFCSPLOWO2_02_FULL_Betaproteobacteria_65_24_curated
PLM3_127_b2_sep16_scaffold_561_4
Cupriavidus basilensis, Cupriavidus, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

3362..3928
DNA (567bp) protein (189aa)
sulfite dehydrogenase (cytochrome) subunit SorB (EC:1.8.2.1)
Sulfite:cytochrome C oxidoreductase subunit B Tax=Cupriavidus basilensis OR16 RepID=H1S226_9BURK
Sulfite:cytochrome C oxidoreductase subunit B {ECO:0000313|EMBL:EHP43392.1}; species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Burkholderiaceae; Cupriavidus.;" source="Cupriavidus basilensis OR16.;"
PLM3_127_b2_sep16_scaffold_561_5
Pseudomonas taeanensis, Pseudomonas, Pseudomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

4056..5495
DNA (1440bp) protein (480aa)
cytochrome C Tax=Burkholderia thailandensis RepID=UPI00016A75D8
Cytochrome C {ECO:0000313|EMBL:KFX70504.1}; species="Bacteria; Proteobacteria; Gammaproteobacteria; Pseudomonadales; Pseudomonadaceae; Pseudomonas.;" source="Pseudomonas taeanensis MS-3.;"
multicopper oxidase family protein
PLM3_127_b2_sep16_scaffold_561_6
Herbaspirillum sp. TSA66, Herbaspirillum, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

5495..5926
DNA (432bp) protein (144aa)
Uncharacterized protein {ECO:0000313|EMBL:KIF81450.1}; species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Oxalobacteraceae; Herbaspirillum.;" source="Herbaspirillum sp. TSA66.;"
PLM3_127_b2_sep16_scaffold_561_7
Sulfuricella sp. T08, Sulfuricella, Sulfuricellales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

6053..6484
DNA (432bp) protein (144aa)
1,4-dihydroxy-2-naphthoate octaprenyltransferase {ECO:0000256|HAMAP-Rule:MF_01937}; Short=DHNA-octaprenyltransferase {ECO:0000256|HAMAP-Rule:MF_01937};; EC=2.5.1.74 {ECO:0000256|HAMAP-Rule:MF_01937};; species="Bacteria; Proteobacteria; Betaproteobacteria; Sulfuricellales; Sulfuricellaceae; Sulfuricella.;" source="Sulfuricella sp. T08.;"
1,4-dihydroxy-2-naphthoate octaprenyltransferase Tax=endosymbiont of unidentified scaly snail isolate Monju RepID=S6BHG0_9GAMM
1,4-dihydroxy-2-naphthoate octaprenyltransferase
PLM3_127_b2_sep16_scaffold_561_8
RBG_16_Chloroflexi_68_14_curated, Chloroflexi, Bacteria

Not on your lists

6463..6888
DNA (426bp) protein (142aa)
1,4-dihydroxy-2-naphtoate prenyltransferase (EC:2.5.1.-)
1,4-dihydroxy-2-naphtoate prenyltransferase Tax=Dechloromonas aromatica (strain RCB) RepID=Q479T8_DECAR
Tax=RBG_16_Chloroflexi_68_14_curated
PLM3_127_b2_sep16_scaffold_561_9
R_Burkholderiales_69_20, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

6906..7628
DNA (723bp) protein (241aa)
ubiE; ubiquinone/menaquinone biosynthesis methyltransferase (EC:2.1.1.-)
Ubiquinone/menaquinone biosynthesis C-methyltransferase UbiE Tax=Sulfuricella denitrificans skB26 RepID=S6AB10_9PROT
Tax=RIFCSPHIGHO2_12_FULL_Burkholderiales_69_20_curated
PLM3_127_b2_sep16_scaffold_561_10
RIFCSPLOWO2_12_FULL_Betaproteobacteria_62_13_curated, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

7723..8031
DNA (309bp) protein (103aa)
Tax=RIFCSPLOWO2_12_FULL_Betaproteobacteria_62_13_curated
PLM3_127_b2_sep16_scaffold_561_11
R_Betaproteobacteria_68_150, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

8198..8644
DNA (447bp) protein (149aa)
hypothetical protein Tax=Rudaea cellulosilytica RepID=UPI000382F090
UspA domain-containing protein
Tax=RIFCSPLOWO2_02_FULL_Betaproteobacteria_68_150_curated
PLM3_127_b2_sep16_scaffold_561_12
RBG_16_Betaproteobacteria_66_20_curated, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

8653..9048
DNA (396bp) protein (132aa)
Zinc finger DksA/TraR C4-type Tax=Spiribacter salinus M19-40 RepID=R4VE39_9GAMM
zinc finger DksA/TraR C4-type
Tax=RBG_16_Betaproteobacteria_66_20_curated
PLM3_127_b2_sep16_scaffold_561_13
R_Burkholderiales_57_36, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

9269..10228
DNA (960bp) protein (320aa)
hypothetical protein Tax=Pseudomonas extremaustralis RepID=UPI0002890765
hypothetical protein
Tax=RIFCSPLOWO2_02_FULL_Burkholderiales_57_36_curated
PLM3_127_b2_sep16_scaffold_561_14
R_Betaproteobacteria_65_24, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(10378..11583)
DNA (1206bp) protein (402aa)
Transcriptional regulator, Crp/Fnr family Tax=Burkholderia phytofirmans (strain DSM 17436 / PsJN) RepID=B2TB46_BURPP
Crp/Fnr family transcriptional regulator
Tax=RIFCSPLOWO2_02_FULL_Betaproteobacteria_65_24_curated
PLM3_127_b2_sep16_scaffold_561_15
R_Betaproteobacteria_65_24, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(11687..12340)
DNA (654bp) protein (218aa)
Two component transcriptional regulator, LuxR family Tax=Polaromonas sp. (strain JS666 / ATCC BAA-500) RepID=Q123V4_POLSJ
two component LuxR family transcriptional regulator
Tax=RIFCSPLOWO2_02_FULL_Betaproteobacteria_65_24_curated
PLM3_127_b2_sep16_scaffold_561_16
R_Betaproteobacteria_65_24, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(12337..13638)
DNA (1302bp) protein (434aa)
PAS/PAC sensor signal transduction histidine kinase (EC:2.7.3.-)
PAS/PAC sensor signal transduction histidine kinase Tax=Polaromonas sp. (strain JS666 / ATCC BAA-500) RepID=Q123V3_POLSJ
Tax=RIFCSPLOWO2_02_FULL_Betaproteobacteria_65_24_curated
PLM3_127_b2_sep16_scaffold_561_17
R_Betaproteobacteria_65_24, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

13754..15139
DNA (1386bp) protein (462aa)
hemN; coproporphyrinogen III oxidase (EC:1.3.3.3)
Coproporphyrinogen-III oxidase Tax=Azoarcus sp. (strain BH72) RepID=A1K564_AZOSB
Tax=RIFCSPLOWO2_02_FULL_Betaproteobacteria_65_24_curated
PLM3_127_b2_sep16_scaffold_561_18
R_Betaproteobacteria_67_26, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(15401..16036)
DNA (636bp) protein (212aa)
Probable cytochrome c5 Tax=Thiobacillus denitrificans (strain ATCC 25259) RepID=Q3SME7_THIDA
cytochrome c5
Tax=RIFCSPLOWO2_02_FULL_Betaproteobacteria_67_26_curated
PLM3_127_b2_sep16_scaffold_561_19
Enterobacter aerogenes, Enterobacter, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(16081..16647)
DNA (567bp) protein (189aa)
cytochrome C protein NapC Tax=Enterobacteriaceae bacterium LSJC7 RepID=UPI00035E4FC3
Cytochrome c-type protein {ECO:0000256|PIRNR:PIRNR000013}; species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Enterobacter.;" source="Enterobacter aerogenes (Aerobacter aerogenes).;"
cytochrome C protein NapC
PLM3_127_b2_sep16_scaffold_561_20
Nitrosomonas communis, Nitrosomonas, Nitrosomonadales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

16819..17730
DNA (912bp) protein (304aa)
Decaheme c-type cytochrome, DmsE family Tax=Azoarcus sp. KH32C RepID=H0PZ76_9RHOO
Cytochrome C {ECO:0000313|EMBL:AKH39363.1}; species="Bacteria; Proteobacteria; Betaproteobacteria; Nitrosomonadales; Nitrosomonadaceae; Nitrosomonas.;" source="Nitrosomonas communis.;"
decaheme c-type cytochrome, DmsE family
PLM3_127_b2_sep16_scaffold_561_21
Nitrosomonas communis, Nitrosomonas, Nitrosomonadales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

17755..19848
DNA (2094bp) protein (698aa)
Uncharacterized protein Tax=Azoarcus sp. KH32C RepID=H0PZ77_9RHOO
Uncharacterized protein {ECO:0000313|EMBL:AKH36635.1}; species="Bacteria; Proteobacteria; Betaproteobacteria; Nitrosomonadales; Nitrosomonadaceae; Nitrosomonas.;" source="Nitrosomonas communis.;"
hypothetical protein
PLM3_127_b2_sep16_scaffold_561_22
RIFCSPLOWO2_12_FULL_Betaproteobacteria_62_58_curated, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

19931..20221
DNA (291bp) protein (97aa)
Cytochrome c class I Tax=Methylotenera sp. (strain 301) RepID=D7DLT7_METS0
class I cytochrome c
Tax=RIFCSPLOWO2_12_FULL_Betaproteobacteria_62_58_curated
PLM3_127_b2_sep16_scaffold_561_23
R_Betaproteobacteria_67_26, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(20232..20822)
DNA (591bp) protein (197aa)
Hemerythrin HHE cation binding domain protein Tax=Leptothrix cholodnii (strain ATCC 51168 / LMG 8142 / SP-6) RepID=B1Y4N9_LEPCP
hemerythrin HHE cation-binding region
Tax=RIFCSPLOWO2_02_FULL_Betaproteobacteria_67_26_curated
PLM3_127_b2_sep16_scaffold_561_24
R_Betaproteobacteria_61_14, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(20884..21327)
DNA (444bp) protein (148aa)
Universal stress protein Tax=Thauera RepID=C4ZLY8_THASP
UspA domain-containing protein
Tax=RifCSPlowO2_12_Betaproteobacteria_61_14_curated
PLM3_127_b2_sep16_scaffold_561_25
RIFCSPLOWO2_12_FULL_Betaproteobacteria_62_13_curated, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

21489..22160
DNA (672bp) protein (224aa)
Uncharacterized protein Tax=Ramlibacter tataouinensis (strain ATCC BAA-407 / DSM 14655 / LMG 21543 / TTB310) RepID=F5Y364_RAMTT
hypothetical protein
Tax=RIFCSPLOWO2_12_FULL_Betaproteobacteria_62_13_curated
PLM3_127_b2_sep16_scaffold_561_26
R_Betaproteobacteria_65_24, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(22202..23587)
DNA (1386bp) protein (462aa)
Replicative DNA helicase Tax=Nitrosospira sp. APG3 RepID=M5DJD3_9PROT
replicative DNA helicase
Tax=RIFCSPLOWO2_02_FULL_Betaproteobacteria_65_24_curated
PLM3_127_b2_sep16_scaffold_561_27
R_Betaproteobacteria_65_24, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists


comp(23747..24205)
DNA (459bp) protein (153aa)
50S ribosomal protein L9 Tax=Nitrosospira sp. APG3 RepID=M5DKW2_9PROT
50S ribosomal protein L9
Tax=RIFCSPLOWO2_02_FULL_Betaproteobacteria_65_24_curated
PLM3_127_b2_sep16_scaffold_561_28
RIFCSPLOWO2_12_FULL_Betaproteobacteria_64_23_curated, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists


comp(24215..24526)
DNA (312bp) protein (104aa)
Putative 30S ribosomal protein S18 RpsR Tax=mine drainage metagenome RepID=E6QSQ5_9ZZZZ
rpsR; 30S ribosomal protein S18
Tax=RIFCSPLOWO2_12_FULL_Betaproteobacteria_64_23_curated
PLM3_127_b2_sep16_scaffold_561_29
R_Betaproteobacteria_61_14, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(24529..24756)
DNA (228bp) protein (76aa)
Primosomal replication protein N Tax=Dechloromonas aromatica (strain RCB) RepID=Q47GQ8_DECAR
hypothetical protein
Tax=RifCSPlowO2_12_Betaproteobacteria_61_14_curated
PLM3_127_b2_sep16_scaffold_561_30
R_Betaproteobacteria_62_17, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists


comp(24839..25231)
DNA (393bp) protein (131aa)
30S ribosomal protein S6 Tax=Dechloromonas aromatica (strain RCB) RepID=RS6_DECAR
rpsF; 30S ribosomal protein S6
Tax=RIFCSPLOWO2_02_FULL_Betaproteobacteria_62_17_curated
Displaying items 1-30 of 38 in total

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