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PLM3_127_b2_sep16_scaffold_849

Search features with annotation key words

Displaying items 1-30 of 31 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
PLM3_127_b2_sep16_scaffold_849_1
R_Betaproteobacteria_62_17, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(3..770)
DNA (768bp) protein (256aa)
Ribosome-binding ATPase YchF Tax=Burkholderia rhizoxinica (strain DSM 19002 / CIP 109453 / HKI 454) RepID=E5AQ06_BURRH
GTP-binding protein, translation factor
Tax=RIFCSPLOWO2_02_FULL_Betaproteobacteria_62_17_curated
PLM3_127_b2_sep16_scaffold_849_2
RBG_16_Betaproteobacteria_64_18_curated, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(770..1348)
DNA (579bp) protein (193aa)
Peptidyl-tRNA hydrolase Tax=Nitrosomonas sp. (strain Is79A3) RepID=F8GDH3_NITSI
peptidyl-tRNA hydrolase
Tax=RBG_16_Betaproteobacteria_64_18_curated
PLM3_127_b2_sep16_scaffold_849_3
R_Betaproteobacteria_64_12, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists


comp(1403..2203)
DNA (801bp) protein (267aa)
50S ribosomal protein L25 Tax=Sideroxydans lithotrophicus (strain ES-1) RepID=D5CLY5_SIDLE
ribosomal 5S rRNA E-loop binding protein Ctc/L25/TL5
Tax=RIFCSPLOWO2_02_FULL_Betaproteobacteria_64_12_curated
PLM3_127_b2_sep16_scaffold_849_4
RBG_16_Betaproteobacteria_64_18_curated, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(2256..3206)
DNA (951bp) protein (317aa)
ribose-phosphate pyrophosphokinase (EC:2.7.6.1)
Ribose-phosphate pyrophosphokinase Tax=Methyloversatilis universalis FAM5 RepID=F5RHL1_9RHOO
Tax=RBG_16_Betaproteobacteria_64_18_curated
PLM3_127_b2_sep16_scaffold_849_trna_1
unknown

Not on your lists

comp(3334..3407)
DNA (74bp)
transferRNA Gln
PLM3_127_b2_sep16_scaffold_849_5
R_Betaproteobacteria_63_19, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(3498..4355)
DNA (858bp) protein (286aa)
4-diphosphocytidyl-2C-methyl-D-erythritol kinase (EC:2.7.1.148)
4-diphosphocytidyl-2-C-methyl-D-erythritol kinase Tax=Sulfuricella denitrificans skB26 RepID=S6ADF4_9PROT
Tax=RIFCSPLOWO2_02_FULL_Betaproteobacteria_63_19_curated
PLM3_127_b2_sep16_scaffold_849_6
R_Betaproteobacteria_63_19, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(4343..4876)
DNA (534bp) protein (178aa)
outer membrane lipoprotein LolB; K02494 outer membrane lipoprotein LolB bin=THIO_MID species=Thiobacillus denitrificans genus=Thiobacillus taxon_order=Hydrogenophilales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=THIO_MID organism_group=Betaproteobacteria
outer-membrane lipoprotein lolB
Tax=RIFCSPLOWO2_02_FULL_Betaproteobacteria_63_19_curated
PLM3_127_b2_sep16_scaffold_849_7
R_Betaproteobacteria_64_12, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(4883..6670)
DNA (1788bp) protein (596aa)
Uncharacterized protein Tax=Sulfuricella denitrificans skB26 RepID=S6AB05_9PROT
hypothetical protein
Tax=RIFCSPLOWO2_02_FULL_Betaproteobacteria_64_12_curated
PLM3_127_b2_sep16_scaffold_849_8
R_Betaproteobacteria_65_24, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

6731..7555
DNA (825bp) protein (275aa)
mutM; formamidopyrimidine-DNA glycosylase (EC:3.2.2.23)
Formamidopyrimidine-DNA glycosylase Tax=Thauera sp. 63 RepID=N6X991_9RHOO
Tax=RIFCSPLOWO2_02_FULL_Betaproteobacteria_65_24_curated
PLM3_127_b2_sep16_scaffold_849_9
RIFCSPLOWO2_12_FULL_Betaproteobacteria_62_13b_curated, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(7566..8054)
DNA (489bp) protein (163aa)
coaD; phosphopantetheine adenylyltransferase (EC:2.7.7.3)
Phosphopantetheine adenylyltransferase Tax=Azoarcus sp. (strain BH72) RepID=COAD_AZOSB
Tax=RIFCSPLOWO2_12_FULL_Betaproteobacteria_62_13b_curated
PLM3_127_b2_sep16_scaffold_849_10
R_Betaproteobacteria_65_24, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(8023..8604)
DNA (582bp) protein (194aa)
16S rRNA (Guanine(966)-N(2))-methyltransferase ## SSU rRNA m(2)G966 Tax=Nitrosospira sp. APG3 RepID=M5DFG2_9PROT
RNA methyltransferase, RsmD family
Tax=RIFCSPLOWO2_02_FULL_Betaproteobacteria_65_24_curated
PLM3_127_b2_sep16_scaffold_849_11
R_Betaproteobacteria_64_12, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(8591..9850)
DNA (1260bp) protein (420aa)
zinc protease Tax=Methyloversatilis universalis RepID=UPI000362AD9C
putative zinc protease
Tax=RIFCSPLOWO2_02_FULL_Betaproteobacteria_64_12_curated
PLM3_127_b2_sep16_scaffold_849_12
Nitrosospira sp. NpAV, Nitrosospira, Nitrosomonadales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(9952..11313)
DNA (1362bp) protein (454aa)
Peptidase M16-like protein Tax=Nitrosospira multiformis (strain ATCC 25196 / NCIMB 11849) RepID=Q2Y5E7_NITMU
Peptidase M16 {ECO:0000313|EMBL:KIO48831.1}; species="Bacteria; Proteobacteria; Betaproteobacteria; Nitrosomonadales; Nitrosomonadaceae; Nitrosospira.;" source="Nitrosospira sp. NpAV.;"
peptidase M16-like protein
PLM3_127_b2_sep16_scaffold_849_13
R_Betaproteobacteria_65_24, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

11383..12321
DNA (939bp) protein (313aa)
Signal recognition particle receptor FtsY Tax=Burkholderia phenoliruptrix BR3459a RepID=K0DI44_9BURK
signal recognition particle-docking protein FtsY
Tax=RIFCSPLOWO2_02_FULL_Betaproteobacteria_65_24_curated
PLM3_127_b2_sep16_scaffold_849_14
R_Betaproteobacteria_65_24, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

12331..12987
DNA (657bp) protein (219aa)
Putative ATPase involved in cell division Tax=Azospira oryzae (strain ATCC BAA-33 / DSM 13638 / PS) RepID=G8QJK1_AZOSU
putative ATPase involved in cell division
Tax=RIFCSPLOWO2_02_FULL_Betaproteobacteria_65_24_curated
PLM3_127_b2_sep16_scaffold_849_15
RBG_16_Betaproteobacteria_64_18_curated, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

12984..13898
DNA (915bp) protein (305aa)
Cell division protein FtsX Tax=Nitrosomonas sp. AL212 RepID=F9ZD92_9PROT
hypothetical protein
Tax=RBG_16_Betaproteobacteria_64_18_curated
PLM3_127_b2_sep16_scaffold_849_16
R_Betaproteobacteria_65_24, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

14072..14920
DNA (849bp) protein (283aa)
RNA polymerase sigma factor RpoH Tax=Nitrosospira sp. APG3 RepID=M5DHE0_9PROT
RNA polymerase, sigma 32 subunit, RpoH
Tax=RIFCSPLOWO2_02_FULL_Betaproteobacteria_65_24_curated
PLM3_127_b2_sep16_scaffold_849_17
Azoarcus sp. KH32C, Azoarcus, Rhodocyclales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(14972..15913)
DNA (942bp) protein (314aa)
hypothetical protein Tax=Azoarcus toluclasticus RepID=UPI000365BA20
response regulator receiver modulated diguanylate cyclase
Response regulator receiver modulated diguanylate cyclase {ECO:0000313|EMBL:BAL24738.1}; species="Bacteria; Proteobacteria; Betaproteobacteria; Rhodocyclales; Rhodocyclaceae; Azoarcus.;" source="Azoarcus sp. KH32C.;"
PLM3_127_b2_sep16_scaffold_849_18
RBG_16_Betaproteobacteria_64_18_curated, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(15953..16540)
DNA (588bp) protein (196aa)
photosynthetic protein synthase I Tax=Janthinobacterium sp. CG3 RepID=UPI000347C657
lipoprotein
Tax=RBG_16_Betaproteobacteria_64_18_curated
PLM3_127_b2_sep16_scaffold_849_19
RBG_16_Betaproteobacteria_64_18_curated, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(16551..17432)
DNA (882bp) protein (294aa)
protoheme IX farnesyltransferase Tax=Rhodocyclaceae bacterium RZ94 RepID=UPI0003769706
ctaB; protoheme IX farnesyltransferase
Tax=RBG_16_Betaproteobacteria_64_18_curated
PLM3_127_b2_sep16_scaffold_849_20
RIFCSPLOWO2_12_FULL_Betaproteobacteria_64_23_curated, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(17466..17978)
DNA (513bp) protein (171aa)
hypothetical protein Tax=Herbaspirillum sp. JC206 RepID=UPI0002E3149C
hypothetical protein
Tax=RIFCSPLOWO2_12_FULL_Betaproteobacteria_64_23_curated
PLM3_127_b2_sep16_scaffold_849_21
RIFCSPLOWO2_12_FULL_Betaproteobacteria_64_23_curated, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(18034..18753)
DNA (720bp) protein (240aa)
SURF1 family protein bin=GWE1_T_denit_62_9 species=Thiobacillus denitrificans genus=Thiobacillus taxon_order=Hydrogenophilales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=GWE1_T_denit_62_9 organism_group=Betaproteobacteria organism_desc=exp 2.9 Mb
SURF1 family protein
Tax=RIFCSPLOWO2_12_FULL_Betaproteobacteria_64_23_curated
PLM3_127_b2_sep16_scaffold_849_22
RIFCSPLOWO2_12_FULL_Betaproteobacteria_64_23_curated, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

18819..19016
DNA (198bp) protein (66aa)
hypothetical protein bin=THIO_MID species=Thiobacillus thioparus genus=Thiobacillus taxon_order=Hydrogenophilales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=THIO_MID organism_group=Betaproteobacteria
transmembrane protein
Tax=RIFCSPLOWO2_12_FULL_Betaproteobacteria_64_23_curated
PLM3_127_b2_sep16_scaffold_849_23
RIFCSPLOWO2_12_FULL_Betaproteobacteria_64_23_curated, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(19088..19936)
DNA (849bp) protein (283aa)
coxC; cytochrome c oxidase subunit III (EC:1.9.3.1)
Cytochrome c oxidase, subunit III Tax=Nitrosomonas europaea (strain ATCC 19718 / NBRC 14298) RepID=Q82VQ3_NITEU
Tax=RIFCSPLOWO2_12_FULL_Betaproteobacteria_64_23_curated
PLM3_127_b2_sep16_scaffold_849_24
R_Betaproteobacteria_65_24, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(19952..20167)
DNA (216bp) protein (72aa)
Putative membrane protein Tax=Nitrosospira multiformis (strain ATCC 25196 / NCIMB 11849) RepID=Q2YCM7_NITMU
hypothetical protein
Tax=RIFCSPLOWO2_02_FULL_Betaproteobacteria_65_24_curated
PLM3_127_b2_sep16_scaffold_849_25
R_Betaproteobacteria_65_24, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(20173..20724)
DNA (552bp) protein (184aa)
Cytochrome C oxidase assembly protein Tax=Thauera sp. 63 RepID=N6Y4S6_9RHOO
coxG; cytochrome C oxidase assembly protein
Tax=RIFCSPLOWO2_02_FULL_Betaproteobacteria_65_24_curated
PLM3_127_b2_sep16_scaffold_849_26
unknown

Not on your lists

comp(20721..20834)
DNA (114bp) protein (38aa)

This feature has no annotations

PLM3_127_b2_sep16_scaffold_849_27
RIFCSPLOWO2_12_FULL_Betaproteobacteria_64_23_curated, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(20831..22420)
DNA (1590bp) protein (530aa)
Cytochrome c oxidase, subunit I Tax=Nitrosomonas sp. (strain Is79A3) RepID=F8GHQ5_NITSI
cytochrome c oxidase subunit I
Tax=RIFCSPLOWO2_12_FULL_Betaproteobacteria_64_23_curated
PLM3_127_b2_sep16_scaffold_849_28
RIFCSPLOWO2_12_FULL_Betaproteobacteria_64_23_curated, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(22417..23256)
DNA (840bp) protein (280aa)
Cytochrome c oxidase subunit 2 Tax=Nitrosospira multiformis (strain ATCC 25196 / NCIMB 11849) RepID=Q2Y847_NITMU
cytochrome c oxidase subunit II
Tax=RIFCSPLOWO2_12_FULL_Betaproteobacteria_64_23_curated
PLM3_127_b2_sep16_scaffold_849_29
RBG_16_Betaproteobacteria_64_18_curated, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(23388..24251)
DNA (864bp) protein (288aa)
Malonyl-[acyl-carrier protein] O-methyltransferase Tax=Dechloromonas aromatica (strain RCB) RepID=Q47IF5_DECAR
biotin synthesis protein
Tax=RBG_16_Betaproteobacteria_64_18_curated
Displaying items 1-30 of 31 in total

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