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PLM3_127_b2_sep16_scaffold_2504

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Displaying 28 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
PLM3_127_b2_sep16_scaffold_2504_1
RIFCSPLOWO2_12_FULL_Betaproteobacteria_65_14_curated, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(3..365)
DNA (363bp) protein (121aa)
Uncharacterized protein Tax=Acidovorax sp. CF316 RepID=J0KD05_9BURK
hypothetical protein
Tax=RIFCSPLOWO2_12_FULL_Betaproteobacteria_65_14_curated
PLM3_127_b2_sep16_scaffold_2504_2
RIFCSPLOWO2_12_FULL_Betaproteobacteria_65_14_curated, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

404..1558
DNA (1155bp) protein (385aa)
Twin-arginine translocation pathway signal Tax=Cupriavidus basilensis OR16 RepID=H1S9K3_9BURK
ethanolamine utilization protein EutN
Tax=RIFCSPLOWO2_12_FULL_Betaproteobacteria_65_14_curated
PLM3_127_b2_sep16_scaffold_2504_3
RIFCSPLOWO2_12_FULL_Betaproteobacteria_65_14_curated, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

1605..2477
DNA (873bp) protein (291aa)
Branched-chain amino acid ABC transporter, permease protein Tax=Achromobacter piechaudii ATCC 43553 RepID=D4X4V0_9BURK
High-affinity branched-chain amino acid transport system permease protein LivH (TC 3.A.1.4.1) / Branched-chain amino acid transport system permease protein LivM (TC 3.A.1.4.1
Tax=RIFCSPLOWO2_12_FULL_Betaproteobacteria_65_14_curated
PLM3_127_b2_sep16_scaffold_2504_4
Variovorax paradoxus, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

2474..4858
DNA (2385bp) protein (795aa)
ABC-type branched-chain amino acid transport system, ATPase component Tax=Acidovorax sp. CF316 RepID=J0U5Y5_9BURK
Variovorax paradoxus strain MEDvA23 contig_54, whole genome shotgun sequence {ECO:0000313|EMBL:KIQ27488.1}; species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Variovorax paradoxus.;"
Branched-chain amino acid transport ATP-binding protein LivF (TC 3.A.1.4.1
PLM3_127_b2_sep16_scaffold_2504_5
RLO_Betaproteobacteria_68_19, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

4876..5223
DNA (348bp) protein (116aa)
hypothetical protein Tax=Hyphomicrobium zavarzinii RepID=UPI0003744F37
endoribonuclease L-PSP
Tax=RIFCSPLOWO2_12_FULL_Betaproteobacteria_68_19_curated
PLM3_127_b2_sep16_scaffold_2504_6
R_Betaproteobacteria_67_26, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

5289..6731
DNA (1443bp) protein (481aa)
Protein kinase Tax=Sulfuricella denitrificans skB26 RepID=S6ALM4_9PROT
protein kinase
Tax=RIFCSPLOWO2_02_FULL_Betaproteobacteria_67_26_curated
PLM3_127_b2_sep16_scaffold_2504_7
RIFCSPLOWO2_12_FULL_Betaproteobacteria_64_23_curated, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(6715..7566)
DNA (852bp) protein (284aa)
Phosphoserine phosphatase SerB Tax=Pseudogulbenkiania ferrooxidans 2002 RepID=B9Z1G4_9NEIS
phosphoserine phosphatase SerB
Tax=RIFCSPLOWO2_12_FULL_Betaproteobacteria_64_23_curated
PLM3_127_b2_sep16_scaffold_2504_8
RIFCSPLOWO2_12_FULL_Betaproteobacteria_65_14_curated, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(7563..8438)
DNA (876bp) protein (292aa)
Transcription-repair-coupling factor Tax=Nitrosospira sp. APG3 RepID=M5DIR1_9PROT
transcription-repair coupling factor
Tax=RIFCSPLOWO2_12_FULL_Betaproteobacteria_65_14_curated
PLM3_127_b2_sep16_scaffold_2504_9
RIFCSPLOWO2_12_FULL_Betaproteobacteria_65_14_curated, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(8438..10873)
DNA (2436bp) protein (812aa)
Transcription-repair-coupling factor Tax=Thauera aminoaromatica S2 RepID=N6YXV3_9RHOO
transcription-repair coupling factor
Tax=RIFCSPLOWO2_12_FULL_Betaproteobacteria_65_14_curated
PLM3_127_b2_sep16_scaffold_2504_10
R_Betaproteobacteria_68_150, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

11018..11617
DNA (600bp) protein (200aa)
2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase Tax=Sideroxydans lithotrophicus (strain ES-1) RepID=D5CUS2_SIDLE
2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase
Tax=RIFCSPLOWO2_02_FULL_Betaproteobacteria_68_150_curated
PLM3_127_b2_sep16_scaffold_2504_11
RIFCSPLOWO2_12_FULL_Betaproteobacteria_65_14_curated, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

11630..12097
DNA (468bp) protein (156aa)
2C-methyl-D-erythritol 2,4-cyclodiphosphate synthase (EC:4.6.1.12)
2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase Tax=Sideroxydans lithotrophicus (strain ES-1) RepID=D5CUS1_SIDLE
Tax=RIFCSPLOWO2_12_FULL_Betaproteobacteria_65_14_curated
PLM3_127_b2_sep16_scaffold_2504_12
RLO_Betaproteobacteria_68_20, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

12094..12717
DNA (624bp) protein (208aa)
Transcriptional regulator Tax=Deinococcus peraridilitoris (strain DSM 19664 / LMG 22246 / CIP 109416 / KR-200) RepID=L0A3J0_DEIPD
transcriptional regulator
Tax=RIFCSPLOWO2_12_FULL_Betaproteobacteria_68_20_curated
PLM3_127_b2_sep16_scaffold_2504_13
RIFCSPLOWO2_12_FULL_Betaproteobacteria_65_14_curated, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

12718..13206
DNA (489bp) protein (163aa)
2',5' RNA ligase; K01975 2'-5' RNA ligase [EC:6.5.1.-] bin=THIO_MID species=Thiobacillus thioparus genus=Thiobacillus taxon_order=Hydrogenophilales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=THIO_MID organism_group=Betaproteobacteria
2'-5' RNA ligase
Tax=RIFCSPLOWO2_12_FULL_Betaproteobacteria_65_14_curated
PLM3_127_b2_sep16_scaffold_2504_14
RLO_Betaproteobacteria_68_20, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(13164..14480)
DNA (1317bp) protein (439aa)
Osmolarity sensor protein Tax=Thauera linaloolentis 47Lol = DSM 12138 RepID=N6YUT5_9RHOO
histidine kinase
Tax=RIFCSPLOWO2_12_FULL_Betaproteobacteria_68_20_curated
PLM3_127_b2_sep16_scaffold_2504_15
R_Betaproteobacteria_67_19, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(14477..15202)
DNA (726bp) protein (242aa)
Transcriptional regulatory protein OmpR Tax=Methyloversatilis universalis FAM5 RepID=F5RA95_9RHOO
ompR; transcriptional regulatory protein ompR
Tax=RIFCSPLOWO2_02_FULL_Betaproteobacteria_67_19_curated
PLM3_127_b2_sep16_scaffold_2504_16
RLO_Betaproteobacteria_68_20, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

15259..15507
DNA (249bp) protein (83aa)
Tax=RIFCSPLOWO2_12_FULL_Betaproteobacteria_68_20_curated
PLM3_127_b2_sep16_scaffold_2504_17
RIFCSPLOWO2_12_FULL_Betaproteobacteria_65_14_curated, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(15497..18130)
DNA (2634bp) protein (878aa)
hypothetical protein Tax=Massilia niastensis RepID=UPI000381C3F8
PAS/PAC sensor-containing diguanylate cyclase/phosphodiesterase
Tax=RIFCSPLOWO2_12_FULL_Betaproteobacteria_65_14_curated
PLM3_127_b2_sep16_scaffold_2504_18
RLO_Betaproteobacteria_68_20, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(18183..19583)
DNA (1401bp) protein (467aa)
glycerol-3-phosphate acyltransferase (EC:2.3.1.15)
Glycerol-3-phosphate O-acyltransferase Tax=Burkholderiales bacterium JOSHI_001 RepID=H5WNR6_9BURK
Tax=RIFCSPLOWO2_12_FULL_Betaproteobacteria_68_20_curated
PLM3_127_b2_sep16_scaffold_2504_19
RIFCSPLOWO2_12_FULL_Betaproteobacteria_65_14_curated, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(19580..20452)
DNA (873bp) protein (291aa)
hypothetical protein Tax=Limnohabitans sp. Rim28 RepID=UPI0002D833C5
membrane protein
Tax=RIFCSPLOWO2_12_FULL_Betaproteobacteria_65_14_curated
PLM3_127_b2_sep16_scaffold_2504_20
RLO_Betaproteobacteria_68_19, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(21129..22181)
DNA (1053bp) protein (351aa)
tartrate dehydrogenase (EC:1.1.1.85)
Tartrate dehydrogenase Tax=Pseudomonas sp. GM78 RepID=J2WZY3_9PSED
Tax=RIFCSPLOWO2_12_FULL_Betaproteobacteria_68_19_curated
PLM3_127_b2_sep16_scaffold_2504_21
RIFCSPLOWO2_12_FULL_Betaproteobacteria_65_14_curated, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(22178..23257)
DNA (1080bp) protein (360aa)
tartrate dehydrogenase Tax=Cupriavidus sp. UYPR2.512 RepID=UPI00036E804A
tartrate dehydrogenase
Tax=RIFCSPLOWO2_12_FULL_Betaproteobacteria_65_14_curated
PLM3_127_b2_sep16_scaffold_2504_22
RLO_Betaproteobacteria_68_19, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

23283..23936
DNA (654bp) protein (218aa)
glycoprotease; K14742 hypothetical protease [EC:3.4.-.-] bin=THIO_HI species=Thiobacillus thioparus genus=Thiobacillus taxon_order=Hydrogenophilales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=THIO_HI organism_group=Betaproteobacteria
glycoprotease
Tax=RIFCSPLOWO2_12_FULL_Betaproteobacteria_68_19_curated
PLM3_127_b2_sep16_scaffold_2504_23
RIFCSPLOWO2_12_FULL_Betaproteobacteria_65_14_curated, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

23933..24394
DNA (462bp) protein (154aa)
Ribosomal-protein-alanine acetyltransferase Tax=Accumulibacter phosphatis (strain UW-1) RepID=C7RSP3_ACCPU
ribosomal-protein-alanine acetyltransferase
Tax=RIFCSPLOWO2_12_FULL_Betaproteobacteria_65_14_curated
PLM3_127_b2_sep16_scaffold_2504_24
RIFCSPLOWO2_12_FULL_Betaproteobacteria_65_14_curated, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

24421..25035
DNA (615bp) protein (205aa)
DNA polymerase Tax=Thiobacillus thioparus RepID=UPI00036D7FFF
phage DNA polymerase
Tax=RIFCSPLOWO2_12_FULL_Betaproteobacteria_65_14_curated
PLM3_127_b2_sep16_scaffold_2504_25
RIFCSPLOWO2_12_FULL_Betaproteobacteria_65_14_curated, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(25032..26321)
DNA (1290bp) protein (430aa)
major facilitator transporter Tax=Methyloversatilis universalis RepID=UPI0003610316
Major Facilitator Superfamily transporter
Tax=RIFCSPLOWO2_12_FULL_Betaproteobacteria_65_14_curated
PLM3_127_b2_sep16_scaffold_2504_26
RIFCSPLOWO2_12_FULL_Betaproteobacteria_65_14_curated, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

26354..27424
DNA (1071bp) protein (357aa)
alanine racemase (EC:5.1.1.1)
Alanine racemase Tax=Sulfuricella denitrificans skB26 RepID=S6ACI1_9PROT
Tax=RIFCSPLOWO2_12_FULL_Betaproteobacteria_65_14_curated
PLM3_127_b2_sep16_scaffold_2504_27
RIFCSPLOWO2_12_FULL_Betaproteobacteria_65_14_curated, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

27421..28746
DNA (1326bp) protein (442aa)
DNA repair protein radA Tax=Azoarcus sp. (strain BH72) RepID=A1K678_AZOSB
radA; DNA repair protein RadA
Tax=RIFCSPLOWO2_12_FULL_Betaproteobacteria_65_14_curated
PLM3_127_b2_sep16_scaffold_2504_28
RBG_16_Betaproteobacteria_66_20_curated, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(28762..29319)
DNA (558bp) protein (186aa)
NdvB Tax=Thiobacillus thioparus RepID=UPI0003665803
glycosyltransferase 36
Tax=RBG_16_Betaproteobacteria_66_20_curated
Displaying 28 items

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