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PLM3_127_b2_sep16_scaffold_1788

Search features with annotation key words

Displaying 29 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
PLM3_127_b2_sep16_scaffold_1788_1
RIFCSPLOWO2_12_FULL_Betaproteobacteria_65_14_curated, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(2..2320)
DNA (2319bp) protein (773aa)
DNA mismatch repair protein MutS Tax=Cupriavidus sp. WS RepID=UPI000378BC6B
DNA mismatch repair protein MutS
Tax=RIFCSPLOWO2_12_FULL_Betaproteobacteria_65_14_curated
PLM3_127_b2_sep16_scaffold_1788_2
Variovorax paradoxus, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

2395..2814
DNA (420bp) protein (140aa)
hypothetical protein Tax=Lamprocystis purpurea RepID=UPI000381BACB
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ADU35218.1}; Flags: Precursor;; species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Variovorax paradoxus (strain EPS).;"
PLM3_127_b2_sep16_scaffold_1788_3
unknown

Not on your lists

comp(3174..3362)
DNA (189bp) protein (63aa)

This feature has no annotations

PLM3_127_b2_sep16_scaffold_1788_4
RIFCSPLOWO2_12_FULL_Betaproteobacteria_65_14_curated, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(3499..4314)
DNA (816bp) protein (272aa)
suhB; inositol monophosphatase (EC:3.1.3.25)
inositol monophosphatase Tax=Azoarcus toluclasticus RepID=UPI00037C683F
Tax=RIFCSPLOWO2_12_FULL_Betaproteobacteria_65_14_curated
PLM3_127_b2_sep16_scaffold_1788_5
RIFCSPLOWO2_12_FULL_Betaproteobacteria_65_14_curated, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

4373..5011
DNA (639bp) protein (213aa)
RNA methyltransferase TrmH, group 1 Tax=Nitrosospira multiformis (strain ATCC 25196 / NCIMB 11849) RepID=Q2YB91_NITMU
RNA methyltransferase TrmH
Tax=RIFCSPLOWO2_12_FULL_Betaproteobacteria_65_14_curated
PLM3_127_b2_sep16_scaffold_1788_6
RIFCSPLOWO2_12_FULL_Betaproteobacteria_65_14_curated, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

5044..5748
DNA (705bp) protein (235aa)
Serine acetyltransferase Tax=Azoarcus sp. KH32C RepID=H0PU06_9RHOO
cysE; O-acetylserine synthase
Tax=RIFCSPLOWO2_12_FULL_Betaproteobacteria_65_14_curated
PLM3_127_b2_sep16_scaffold_1788_7
RIFCSPLOWO2_12_FULL_Betaproteobacteria_65_14_curated, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

5812..6273
DNA (462bp) protein (154aa)
Transcriptional regulator, BadM/Rrf2 family Tax=Pseudogulbenkiania RepID=G2IZ67_PSEUL
BadM/Rrf2 family transcriptional regulator
Tax=RIFCSPLOWO2_12_FULL_Betaproteobacteria_65_14_curated
PLM3_127_b2_sep16_scaffold_1788_8
RIFCSPLOWO2_12_FULL_Betaproteobacteria_65_14_curated, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

6270..7478
DNA (1209bp) protein (403aa)
iscS; cysteine desulfurase IscS (EC:2.8.1.7)
cysteine desulfurase Tax=Massilia niastensis RepID=UPI00035C4FEC
Tax=RIFCSPLOWO2_12_FULL_Betaproteobacteria_65_14_curated
PLM3_127_b2_sep16_scaffold_1788_9
RIFCSPLOWO2_12_FULL_Betaproteobacteria_65_14_curated, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

7488..7871
DNA (384bp) protein (128aa)
FeS cluster assembly scaffold IscU Tax=Pseudogulbenkiania ferrooxidans EGD-HP2 RepID=U1ADW3_9NEIS
iscU; (Fe-S)-binding protein
Tax=RIFCSPLOWO2_12_FULL_Betaproteobacteria_65_14_curated
PLM3_127_b2_sep16_scaffold_1788_10
R_Betaproteobacteria_66_14, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

7872..8195
DNA (324bp) protein (108aa)
Iron binding protein IscA for iron-sulfur cluster assembly Tax=Burkholderia cepacia GG4 RepID=J7J150_BURCE
Iron binding protein IscA for iron-sulfur cluster assembly
Tax=RIFCSPLOWO2_02_FULL_Betaproteobacteria_66_14_curated
PLM3_127_b2_sep16_scaffold_1788_11
RLO_Betaproteobacteria_68_20, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

8201..8716
DNA (516bp) protein (172aa)
hypothetical protein Tax=Herbaspirillum sp. JC206 RepID=UPI000307F7B5
co-chaperone Hsc20
Tax=RIFCSPLOWO2_12_FULL_Betaproteobacteria_68_20_curated
PLM3_127_b2_sep16_scaffold_1788_12
RIFCSPLOWO2_12_FULL_Betaproteobacteria_65_14_curated, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

8716..10578
DNA (1863bp) protein (621aa)
Chaperone protein HscA homolog Tax=Ralstonia sp. AU12-08 RepID=S9T4M7_9RALS
hscA; chaperone protein HscA
Tax=RIFCSPLOWO2_12_FULL_Betaproteobacteria_65_14_curated
PLM3_127_b2_sep16_scaffold_1788_13
RLO_Betaproteobacteria_68_20, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

10578..10928
DNA (351bp) protein (117aa)
(2Fe-2S) ferredoxin Tax=Cupriavidus sp. HPC(L) RepID=V2K8G3_9BURK
fdx; Fe-S clusters assembly [2FE-2S] ferredoxin
Tax=RIFCSPLOWO2_12_FULL_Betaproteobacteria_68_20_curated
PLM3_127_b2_sep16_scaffold_1788_14
RIFCSPLOWO2_12_FULL_Betaproteobacteria_65_14_curated, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

10925..11119
DNA (195bp) protein (65aa)
hypothetical protein Tax=Rhodocyclaceae bacterium RZ94 RepID=UPI000370907A
hypothetical protein
Tax=RIFCSPLOWO2_12_FULL_Betaproteobacteria_65_14_curated
PLM3_127_b2_sep16_scaffold_1788_15
RIFCSPLOWO2_12_FULL_Betaproteobacteria_65_14_curated, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

11129..11629
DNA (501bp) protein (167aa)
Tax=RIFCSPLOWO2_12_FULL_Betaproteobacteria_65_14_curated
PLM3_127_b2_sep16_scaffold_1788_16
RLO_Betaproteobacteria_68_20, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(11630..12220)
DNA (591bp) protein (197aa)
peptide methionine sulfoxide reductase (EC:1.8.4.11)
MsrA3 - peptide methionine sulfoxide reductase Tax=Mariprofundus ferrooxydans RepID=UPI0003614CF9
Tax=RIFCSPLOWO2_12_FULL_Betaproteobacteria_68_20_curated
PLM3_127_b2_sep16_scaffold_1788_17
RLO_Betaproteobacteria_68_20, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(12217..12699)
DNA (483bp) protein (161aa)
hypothetical protein Tax=Armatimonadetes bacterium JGI 0000077-K19 RepID=UPI0003B2E2B2
Appr-1-p processing enzyme family protein
Tax=RIFCSPLOWO2_12_FULL_Betaproteobacteria_68_20_curated
PLM3_127_b2_sep16_scaffold_1788_18
RIFCSPLOWO2_12_FULL_Betaproteobacteria_65_14_curated, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(12744..13565)
DNA (822bp) protein (274aa)
peptidyl-prolyl cis-trans isomerase Tax=Azoarcus toluclasticus RepID=UPI00036AA351
cbf2; putative cell binding factor
Tax=RIFCSPLOWO2_12_FULL_Betaproteobacteria_65_14_curated
PLM3_127_b2_sep16_scaffold_1788_19
RIFCSPLOWO2_12_FULL_Betaproteobacteria_65_14_curated, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(13562..13840)
DNA (279bp) protein (93aa)
stress-induced morphogen BolA
putative stress-induced morphogen BolA; K05527 BolA protein bin=THIO_MID species=Thiobacillus denitrificans genus=Thiobacillus taxon_order=Hydrogenophilales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=THIO_MID organism_group=Betaproteobacteria
Tax=RIFCSPLOWO2_12_FULL_Betaproteobacteria_65_14_curated
PLM3_127_b2_sep16_scaffold_1788_20
RIFCSPLOWO2_12_FULL_Betaproteobacteria_65_14_curated, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(13837..14370)
DNA (534bp) protein (178aa)
Probable intracellular septation protein A Tax=Cupriavidus taiwanensis (strain R1 / LMG 19424) RepID=YCIB_CUPTR
ispZ; intracellular septation protein a
Tax=RIFCSPLOWO2_12_FULL_Betaproteobacteria_65_14_curated
PLM3_127_b2_sep16_scaffold_1788_21
RBG_16_Gamma2_65_34_curated, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(14385..15827)
DNA (1443bp) protein (481aa)
Transglutaminase domain protein Tax=Geobacter metallireducens RepID=Q39ZM2_GEOMG
transglutaminase domain-containing protein
Tax=RBG_16_Gamma2_65_34_curated
PLM3_127_b2_sep16_scaffold_1788_22
RIFCSPLOWO2_12_FULL_Betaproteobacteria_65_14_curated, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

15840..16241
DNA (402bp) protein (134aa)
Alkylhydroperoxidase Tax=Mesorhizobium alhagi CCNWXJ12-2 RepID=H0HSW8_9RHIZ
alkylhydroperoxidase
Tax=RIFCSPLOWO2_12_FULL_Betaproteobacteria_65_14_curated
PLM3_127_b2_sep16_scaffold_1788_23
RIFCSPLOWO2_12_FULL_Betaproteobacteria_65_14_curated, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(16225..16452)
DNA (228bp) protein (76aa)
Tax=RIFCSPLOWO2_12_FULL_Betaproteobacteria_65_14_curated
PLM3_127_b2_sep16_scaffold_1788_24
R_Betaproteobacteria_68_150, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

16526..17389
DNA (864bp) protein (288aa)
Candidate transporter Tax=Ramlibacter tataouinensis (strain ATCC BAA-407 / DSM 14655 / LMG 21543 / TTB310) RepID=F5Y3V3_RAMTT
transporter
Tax=RIFCSPLOWO2_02_FULL_Betaproteobacteria_68_150_curated
PLM3_127_b2_sep16_scaffold_1788_25
RIFCSPLOWO2_12_FULL_Betaproteobacteria_65_14_curated, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(17379..19073)
DNA (1695bp) protein (565aa)
Feruloyl-CoA synthase Tax=Magnetospirillum sp. SO-1 RepID=M2Z9I3_9PROT
feruloyl-CoA synthase
Tax=RIFCSPLOWO2_12_FULL_Betaproteobacteria_65_14_curated
PLM3_127_b2_sep16_scaffold_1788_26
RIFCSPLOWO2_12_FULL_Betaproteobacteria_65_14_curated, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

19086..19910
DNA (825bp) protein (275aa)
hypothetical protein Tax=Limnohabitans sp. Rim28 RepID=UPI0003746B81
taurine dioxygenase
Tax=RIFCSPLOWO2_12_FULL_Betaproteobacteria_65_14_curated
PLM3_127_b2_sep16_scaffold_1788_27
RIFCSPLOWO2_12_FULL_Betaproteobacteria_65_14_curated, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(19918..20307)
DNA (390bp) protein (130aa)
Uncharacterized protein Tax=Novosphingobium tardaugens NBRC 16725 RepID=U2YNQ6_9SPHN
hypothetical protein
Tax=RIFCSPLOWO2_12_FULL_Betaproteobacteria_65_14_curated
PLM3_127_b2_sep16_scaffold_1788_28
RBG_16_Betaproteobacteria_66_20_curated, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(20336..21745)
DNA (1410bp) protein (470aa)
Benzoyl-CoA oxygenase, B subunit Tax=Polaromonas sp. CF318 RepID=J3CXN7_9BURK
benzoyl-CoA oxygenase component B
Tax=RBG_16_Betaproteobacteria_66_20_curated
PLM3_127_b2_sep16_scaffold_1788_29
Cupriavidus pinatubonensis, Cupriavidus, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(21854..22447)
DNA (594bp) protein (198aa)
benzoyl-CoA-dihydrodiol lyase (EC:4.2.1.17)
2,3-dihydro-2,3-dihydroxybenzoyl-CoA ring cleavage enzyme Tax=Cupriavidus pinatubonensis (strain JMP 134 / LMG 1197) RepID=Q472I8_CUPPJ
2,3-dihydro-2,3-dihydroxybenzoyl-CoA ring cleavage enzyme {ECO:0000313|EMBL:AAZ60695.1}; species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Burkholderiaceae; Cupriavidus.;" source="Cupriavidus pinatubonensis (strain JMP 134 / LMG 1197) (Ralstonia; eutropha (strain JMP 134)).;"
Displaying 29 items

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