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PLM3_127_b2_sep16_scaffold_2128

Search features with annotation key words

Displaying 30 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
PLM3_127_b2_sep16_scaffold_2128_1
RLO_Gemmatimonadetes_68_9, Gemmatimonadetes, Bacteria

Not on your lists

comp(2..646)
DNA (645bp) protein (215aa)
class V aminotransferase bin=RBG_19FT_COMBO_Aminicenantes_rel_58_17_partial tax=RBG_19FT_COMBO_Aminicenantes_rel_58_17_partial organism_group=OP8 (Aminicenantes) organism_desc=Curation Candidate
Aminotransferase ScrA
Tax=RIFCSPLOWO2_12_FULL_Gemmatimonadetes_68_9_curated
PLM3_127_b2_sep16_scaffold_2128_2
Gloeocapsa sp. PCC 7428, Gloeocapsa, Chroococcales, Oscillatoriophycideae, Cyanobacteria, Bacteria

Not on your lists

741..1334
DNA (594bp) protein (198aa)
Transcriptional regulator, TetR family Tax=Gloeocapsa sp. PCC 7428 RepID=K9XBV9_9CHRO
transcriptional regulator, TetR family
Transcriptional regulator, TetR family {ECO:0000313|EMBL:AFZ30150.1}; species="Bacteria; Cyanobacteria; Oscillatoriophycideae; Chroococcales; Gloeocapsa.;" source="Gloeocapsa sp. PCC 7428.;"
PLM3_127_b2_sep16_scaffold_2128_3
unknown

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1386..1850
DNA (465bp) protein (155aa)

This feature has no annotations

PLM3_127_b2_sep16_scaffold_2128_4
Methanolacinia petrolearia, Methanolacinia, Methanomicrobiales, Methanomicrobia, Euryarchaeota, Archaea

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comp(1882..2502)
DNA (621bp) protein (207aa)
Uncharacterized protein Tax=Methanoplanus petrolearius (strain DSM 11571 / OCM 486 / SEBR 4847) RepID=E1RHJ9_METP4
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ADN35308.1}; Flags: Precursor;; species="Archaea; Euryarchaeota; Methanomicrobia; Methanomicrobiales; Methanomicrobiaceae; Methanolacinia.;" source="Methanolacinia petrolearia (strain DSM 11571 / OCM 486 / SEBR 4847); (Methanoplanus petrolearius).;"
PLM3_127_b2_sep16_scaffold_2128_5
Lysobacter daejeonensis, Lysobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

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comp(2529..2987)
DNA (459bp) protein (153aa)
Putative uncharacterized protein Tax=Shewanella amazonensis (strain ATCC BAA-1098 / SB2B) RepID=A1S3J5_SHEAM
Uncharacterized protein {ECO:0000313|EMBL:KGM55579.1}; species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Lysobacter.;" source="Lysobacter daejeonensis GH1-9.;"
hypothetical protein
PLM3_127_b2_sep16_scaffold_2128_6
Starkeya novella, Starkeya, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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3259..3855
DNA (597bp) protein (199aa)
Ribosomal RNA adenine methylase transferase Tax=Starkeya novella (strain ATCC 8093 / DSM 506 / CCM 1077 / IAM 12100 / NBRC 12443 / NCIB 9113) RepID=D7A0Z3_STAND
ribosomal RNA adenine methylase transferase
Ribosomal RNA adenine methylase transferase {ECO:0000313|EMBL:ADH87503.1}; species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Xanthobacteraceae; Starkeya.;" source="Starkeya novella (strain ATCC 8093 / DSM 506 / CCM 1077 / IAM 12100 /; NBRC 12443 / NCIB 9113).;"
PLM3_127_b2_sep16_scaffold_2128_7
Rhodospirillum centenum, Rhodospirillum, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(3827..4066)
DNA (240bp) protein (80aa)
Conserved domain protein Tax=Rhodospirillum centenum (strain ATCC 51521 / SW) RepID=B6IRC3_RHOCS
hypothetical protein
Conserved domain protein {ECO:0000313|EMBL:ACI98009.1}; species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Rhodospirillaceae; Rhodospirillum.;" source="Rhodospirillum centenum (strain ATCC 51521 / SW).;"
PLM3_127_b2_sep16_scaffold_2128_8
Methylovorus glucosotrophus, Methylovorus, Methylophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(4063..5667)
DNA (1605bp) protein (535aa)
Carbon starvation protein CstA Tax=Methylovorus sp. (strain SIP3-4) RepID=C6X8Z0_METSD
carbon starvation protein CstA
Carbon starvation protein CstA {ECO:0000313|EMBL:ACT49610.1}; Flags: Precursor;; species="Bacteria; Proteobacteria; Betaproteobacteria; Methylophilales; Methylophilaceae; Methylovorus.;" source="Methylovorus glucosetrophus (strain SIP3-4).;"
PLM3_127_b2_sep16_scaffold_2128_9
R_Betaproteobacteria_61_14, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(5657..6130)
DNA (474bp) protein (158aa)
carbon starvation protein CstA Tax=Methylobacter marinus RepID=UPI0003751B1B
cstA; Carbon starvation protein CstA
Tax=RifCSPlowO2_12_Betaproteobacteria_61_14_curated
PLM3_127_b2_sep16_scaffold_2128_10
Burkholderia cenocepacia, Burkholderia, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

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6371..6841
DNA (471bp) protein (157aa)
Isoquinoline 1-oxidoreductase alpha subunit (EC:1.3.99.16)
Isoquinoline 1-oxidoreductase alpha subunit {ECO:0000313|EMBL:CDN63818.1}; EC=1.3.99.16 {ECO:0000313|EMBL:CDN63818.1};; species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Burkholderiaceae; Burkholderia; Burkholderia cepacia complex.;" source="Burkholderia cenocepacia H111.;"
hypothetical protein Tax=Rudaea cellulosilytica RepID=UPI0003638B04
PLM3_127_b2_sep16_scaffold_2128_11
Rhodothermus marinus, Rhodothermus, Bacteroidetes Order II. Incertae sedis, Bacteroidetes, Bacteria

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6838..9066
DNA (2229bp) protein (743aa)
hypothetical protein Tax=Rudaea cellulosilytica RepID=UPI00036D0EB0
aldehyde oxidase and xanthine dehydrogenase molybdopterin binding protein
Aldehyde oxidase and xanthine dehydrogenase molybdopterin binding protein {ECO:0000313|EMBL:ACY47485.1}; species="Bacteria; Bacteroidetes; Bacteroidetes Order II. Incertae sedis; Rhodothermaceae; Rhodothermus.;" source="Rhodothermus marinus (strain ATCC 43812 / DSM 4252 / R-10); (Rhodothermus obamensis).;"
PLM3_127_b2_sep16_scaffold_2128_12

Not on your lists

comp(9063..9683)
DNA (621bp) protein (207aa)
Uncharacterized protein Tax=Gloeobacter kilaueensis JS1 RepID=U5QHS9_9CYAN
Uncharacterized protein {ECO:0000313|EMBL:AIA11589.1}; Flags: Fragment;; species="Bacteria; environmental samples.;" source="uncultured bacterium.;"
hypothetical protein
PLM3_127_b2_sep16_scaffold_2128_13
unknown

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comp(9703..10230)
DNA (528bp) protein (176aa)

This feature has no annotations

PLM3_127_b2_sep16_scaffold_2128_14
unknown

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comp(10227..11081)
DNA (855bp) protein (285aa)

This feature has no annotations

PLM3_127_b2_sep16_scaffold_2128_15
Kangiella geojedonensis, Kangiella, Oceanospirillales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(11213..11779)
DNA (567bp) protein (189aa)
hypothetical protein Tax=Kangiella aquimarina RepID=UPI00037B3071
NLP/P60 protein {ECO:0000313|EMBL:AKE51831.1}; species="Bacteria; Proteobacteria; Gammaproteobacteria; Oceanospirillales; Alcanivoracaceae; Kangiella.;" source="Kangiella geojedonensis.;"
NLP/P60 protein
PLM3_127_b2_sep16_scaffold_2128_16
R_Gammaproteobacteria_61_13, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(11904..13010)
DNA (1107bp) protein (369aa)
hypothetical protein Tax=Marinobacterium rhizophilum RepID=UPI000365B55C
pyruvate-formate lyase-activating enzyme
Tax=RIFCSPLOWO2_02_FULL_Gammaproteobacteria_61_13_curated
PLM3_127_b2_sep16_scaffold_2128_17
R_Rhodocyclales_63_24, Rhodocyclales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

13031..13861
DNA (831bp) protein (277aa)
MEMO1 family protein TVNIR_1310 Tax=Thioalkalivibrio nitratireducens (strain DSM 14787 / UNIQEM 213 / ALEN2) RepID=L0DVD1_THIND
protein of unknown function DUF52
Tax=RIFCSPLOWO2_02_FULL_Rhodocyclales_63_24_curated
PLM3_127_b2_sep16_scaffold_2128_18
BJP_IG2102_Gammaproteobacteria_62_140, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

13854..14438
DNA (585bp) protein (195aa)
Uncharacterized protein Tax=Thiocystis violascens (strain ATCC 17096 / DSM 198 / 6111) RepID=I3YH74_THIV6
hypothetical protein
Tax=BJP_IG2102_Gammaproteobacteria_62_140
PLM3_127_b2_sep16_scaffold_2128_19
RIFCSPLOWO2_12_FULL_Betaproteobacteria_62_13b_curated, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(14454..15167)
DNA (714bp) protein (238aa)
orotidine-5'-phosphate decarboxylase (EC:4.1.1.23)
Orotidine 5'-phosphate decarboxylase Tax=Magnetococcus sp. (strain MC-1) RepID=A0L4Z6_MAGSM
Tax=RIFCSPLOWO2_12_FULL_Betaproteobacteria_62_13b_curated
PLM3_127_b2_sep16_scaffold_2128_20
Thioalkalivibrio sulfidiphilus, Thioalkalivibrio, Chromatiales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(15194..16360)
DNA (1167bp) protein (389aa)
Deoxyguanosinetriphosphate triphosphohydrolase-like protein Tax=Thioalkalivibrio sp. (strain HL-EbGR7) RepID=B8GPV4_THISH
deoxyguanosinetriphosphate triphosphohydrolase
Deoxyguanosinetriphosphate triphosphohydrolase-like protein {ECO:0000256|HAMAP-Rule:MF_01212}; species="Bacteria; Proteobacteria; Gammaproteobacteria; Chromatiales; Ectothiorhodospiraceae; Thioalkalivibrio.;" source="Thioalkalivibrio sulfidiphilus (strain HL-EbGR7).;"
PLM3_127_b2_sep16_scaffold_2128_21
Candidatus Contendobacter odensis, Candidatus Contendobacter, Gammaproteobacteria, Proteobacteria, Bacteria

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comp(16357..17472)
DNA (1116bp) protein (372aa)
3-dehydroquinate synthase {ECO:0000256|HAMAP-Rule:MF_00110, ECO:0000256|SAAS:SAAS00210858}; EC=4.2.3.4 {ECO:0000256|HAMAP-Rule:MF_00110, ECO:0000256|SAAS:SAAS00210855};; species="Bacteria; Proteobacteria; Gammaproteobacteria; Competibacteraceae; Candidatus Contendobacter.;" source="Candidatus Contendobacter odensis Run_B_J11.;"
3-dehydroquinate synthase Tax=Marichromatium purpuratum 984 RepID=F9U4C7_MARPU
3-dehydroquinate synthase
PLM3_127_b2_sep16_scaffold_2128_22

Not on your lists

comp(17542..18060)
DNA (519bp) protein (173aa)
Shikimate kinase (EC:2.7.1.71)
Shikimate kinase Tax=Hydrocarboniphaga effusa AP103 RepID=I8TCZ7_9GAMM
Marine sediment metagenome DNA, contig: S01H4_S18992 {ECO:0000313|EMBL:GAH14760.1}; species="unclassified sequences; metagenomes; ecological metagenomes.;" source="marine sediment metagenome.;"
PLM3_127_b2_sep16_scaffold_2128_23
Hydrocarboniphaga effusa, Hydrocarboniphaga, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(18118..19473)
DNA (1356bp) protein (452aa)
Uncharacterized protein Tax=Hydrocarboniphaga effusa AP103 RepID=I8TCB2_9GAMM
Uncharacterized protein {ECO:0000313|EMBL:EIT71550.1}; species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Sinobacteraceae; Hydrocarboniphaga.;" source="Hydrocarboniphaga effusa AP103.;"
type IV pilus secretin PilQ
PLM3_127_b2_sep16_scaffold_2128_24
Thiorhodospira sibirica, Thiorhodospira, Chromatiales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(20309..20860)
DNA (552bp) protein (184aa)
hypothetical protein Tax=Thioalkalivibrio thiocyanodenitrificans RepID=UPI00036ADDAE
Pilus assembly protein PilP {ECO:0000313|EMBL:EGZ48481.1}; Flags: Precursor;; species="Bacteria; Proteobacteria; Gammaproteobacteria; Chromatiales; Ectothiorhodospiraceae; Thiorhodospira.;" source="Thiorhodospira sibirica ATCC 700588.;"
Pilus assembly protein PilP
PLM3_127_b2_sep16_scaffold_2128_25
RIFOXYD12_FULL_Gammaproteobacteria_61_37_curated, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(20857..21540)
DNA (684bp) protein (228aa)
Type IV pilus biogenesis protein PilO Tax=sulfur-oxidizing symbionts RepID=G2D922_9GAMM
Pilus assembly protein PilO
Tax=RIFOXYD12_FULL_Gammaproteobacteria_61_37_curated
PLM3_127_b2_sep16_scaffold_2128_26
Lysobacter daejeonensis, Lysobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(21537..22118)
DNA (582bp) protein (194aa)
Type 4 fimbrial biogenesis protein PilN Tax=Methylococcus capsulatus RepID=Q60BY7_METCA
Fimbrial protein {ECO:0000313|EMBL:KGM55308.1}; species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Lysobacter.;" source="Lysobacter daejeonensis GH1-9.;"
pilN; type 4 fimbrial biogenesis protein PilN
PLM3_127_b2_sep16_scaffold_2128_27

Not on your lists

comp(22118..23179)
DNA (1062bp) protein (354aa)
Tfp pilus assembly protein Tax=uncultured bacterium RepID=A5H257_9BACT
Tfp pilus assembly protein {ECO:0000313|EMBL:ABK91973.1}; species="Bacteria; environmental samples.;" source="uncultured bacterium.;"
pilus assembly protein PilM
PLM3_127_b2_sep16_scaffold_2128_28
Thioalkalivibrio sulfidiphilus, Thioalkalivibrio, Chromatiales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

23629..26097
DNA (2469bp) protein (823aa)
peptidoglycan glycosyltransferase (EC:2.4.1.129)
Peptidoglycan glycosyltransferase {ECO:0000313|EMBL:ACL74092.1}; EC=2.4.1.129 {ECO:0000313|EMBL:ACL74092.1};; Flags: Precursor;; species="Bacteria; Proteobacteria; Gammaproteobacteria; Chromatiales; Ectothiorhodospiraceae; Thioalkalivibrio.;" source="Thioalkalivibrio sulfidiphilus (strain HL-EbGR7).;"
Peptidoglycan glycosyltransferase Tax=Thioalkalivibrio sp. (strain HL-EbGR7) RepID=B8GPU5_THISH
PLM3_127_b2_sep16_scaffold_2128_29

Not on your lists

26118..26744
DNA (627bp) protein (209aa)
Uncharacterized protein (Fragment) Tax=mine drainage metagenome RepID=T1CHT1_9ZZZZ
Uncharacterized protein {ECO:0000313|EMBL:EQD65954.1}; Flags: Fragment;; species="unclassified sequences; metagenomes; ecological metagenomes.;" source="mine drainage metagenome.;"
hypothetical protein
PLM3_127_b2_sep16_scaffold_2128_30

Not on your lists

comp(26781..27593)
DNA (813bp) protein (271aa)
Type II citrate synthase Tax=mine drainage metagenome RepID=T1D1T2_9ZZZZ
Type II citrate synthase {ECO:0000313|EMBL:EQD76385.1}; species="unclassified sequences; metagenomes; ecological metagenomes.;" source="mine drainage metagenome.;"
citrate synthase I
Displaying 30 items

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