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PLM3_127_b2_sep16_scaffold_2207

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Displaying 17 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
PLM3_127_b2_sep16_scaffold_2207_1
Alcanivorax sp. PN-3, Alcanivorax, Oceanospirillales, Gammaproteobacteria, Proteobacteria, Bacteria

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3..308
DNA (306bp) protein (102aa)
2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase {ECO:0000256|HAMAP-Rule:MF_00107, ECO:0000256|RuleBase:RU004395}; Short=MECDP-synthase {ECO:0000256|HAMAP-Rule:MF_00107};; Short=MECPP-synthase {ECO:0000256|HAMAP-Rule:MF_00107};; Short=MECPS {ECO:0000256|HAMAP-Rule:MF_00107};; EC=4.6.1.12 {ECO:0000256|HAMAP-Rule:MF_00107, ECO:0000256|RuleBase:RU004395};; species="Bacteria; Proteobacteria; Gammaproteobacteria; Oceanospirillales; Alcanivoracaceae; Alcanivorax.;" source="Alcanivorax sp. PN-3.;"
2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase Tax=Alcanivorax sp. PN-3 RepID=U7HZV3_9GAMM
ispF; 2-C-methyl-D-erythritol 2,4-cyclo diphosphate synthase
PLM3_127_b2_sep16_scaffold_2207_2
Thiocapsa marina, Thiocapsa, Chromatiales, Gammaproteobacteria, Proteobacteria, Bacteria

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415..1374
DNA (960bp) protein (320aa)
tRNA pseudouridine synthase D {ECO:0000256|HAMAP-Rule:MF_01082}; EC=5.4.99.27 {ECO:0000256|HAMAP-Rule:MF_01082};; tRNA pseudouridine(13) synthase {ECO:0000256|HAMAP-Rule:MF_01082}; tRNA pseudouridylate synthase D {ECO:0000256|HAMAP-Rule:MF_01082}; tRNA-uridine isomerase D {ECO:0000256|HAMAP-Rule:MF_01082}; species="Bacteria; Proteobacteria; Gammaproteobacteria; Chromatiales; Chromatiaceae; Thiocapsa.;" source="Thiocapsa marina 5811.;"
tRNA pseudouridine synthase D Tax=Thiocapsa marina 5811 RepID=F9UBL2_9GAMM
tRNA pseudouridine synthase D TruD
PLM3_127_b2_sep16_scaffold_2207_3
Dyella jiangningensis, Dyella, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

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1371..2126
DNA (756bp) protein (252aa)
Putative enoyl-CoA hydratase Tax=Rhodanobacter denitrificans RepID=I4WPQ8_9GAMM
enoyl-CoA hydratase
Enoyl-CoA hydratase {ECO:0000313|EMBL:AHX12629.1}; species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Dyella.;" source="Dyella jiangningensis.;"
PLM3_127_b2_sep16_scaffold_2207_4

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comp(2172..2699)
DNA (528bp) protein (176aa)
Smr protein/MutS2 (Fragment) Tax=mine drainage metagenome RepID=T1CBH3_9ZZZZ
Smr protein/MutS2 {ECO:0000313|EMBL:EQD78653.1}; Flags: Fragment;; species="unclassified sequences; metagenomes; ecological metagenomes.;" source="mine drainage metagenome.;"
Smr protein/MutS2
PLM3_127_b2_sep16_scaffold_2207_5
Methylophaga frappieri, Methylophaga, Thiotrichales, Gammaproteobacteria, Proteobacteria, Bacteria

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2809..3489
DNA (681bp) protein (227aa)
5'-nucleotidase (EC:3.1.3.5)
5'-nucleotidase SurE {ECO:0000256|HAMAP-Rule:MF_00060}; EC=3.1.3.5 {ECO:0000256|HAMAP-Rule:MF_00060};; Nucleoside 5'-monophosphate phosphohydrolase {ECO:0000256|HAMAP-Rule:MF_00060}; species="Bacteria; Proteobacteria; Gammaproteobacteria; Thiotrichales; Piscirickettsiaceae; Methylophaga.;" source="Methylophaga frappieri (strain ATCC BAA-2434 / DSM 25690 / JAM7).;"
5'-nucleotidase SurE Tax=Methylophaga frappieri (strain ATCC BAA-2434 / DSM 25690 / JAM7) RepID=I1YHY6_METFJ
PLM3_127_b2_sep16_scaffold_2207_6
BJP_IG2102_Gammaproteobacteria_62_140, Gammaproteobacteria, Proteobacteria, Bacteria

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3559..4221
DNA (663bp) protein (221aa)
pcm; protein-L-isoaspartate O-methyltransferase (EC:2.1.1.77)
hypothetical protein Tax=Marinobacterium rhizophilum RepID=UPI0003647541
Tax=BJP_IG2102_Gammaproteobacteria_62_140
PLM3_127_b2_sep16_scaffold_2207_7
Nitrococcus mobilis, Nitrococcus, Chromatiales, Gammaproteobacteria, Proteobacteria, Bacteria

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4313..4981
DNA (669bp) protein (223aa)
hypothetical protein Tax=Singularimonas variicoloris RepID=UPI00035C24DC
Peptidase M23B {ECO:0000313|EMBL:EAR21529.1}; species="Bacteria; Proteobacteria; Gammaproteobacteria; Chromatiales; Ectothiorhodospiraceae; Nitrococcus.;" source="Nitrococcus mobilis Nb-231.;"
peptidase M23B
PLM3_127_b2_sep16_scaffold_2207_8
Thiorhodococcus sp. AK35, Thiorhodococcus, Chromatiales, Gammaproteobacteria, Proteobacteria, Bacteria

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comp(5333..5755)
DNA (423bp) protein (141aa)
Uncharacterized protein Tax=Nitrococcus mobilis Nb-231 RepID=A4BS52_9GAMM
Uncharacterized protein {ECO:0000313|EMBL:EXJ14336.1}; species="Bacteria; Proteobacteria; Gammaproteobacteria; Chromatiales; Chromatiaceae; Thiorhodococcus.;" source="Thiorhodococcus sp. AK35.;"
hypothetical protein
PLM3_127_b2_sep16_scaffold_2207_9
Candidatus Competibacter denitrificans, Candidatus Competibacter, Gammaproteobacteria, Proteobacteria, Bacteria

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5797..6795
DNA (999bp) protein (333aa)
hypothetical protein Tax=Chitiniphilus shinanonensis RepID=UPI00036F21D5
Putative Regulatory protein {ECO:0000313|EMBL:CDI03936.1}; species="Bacteria; Proteobacteria; Gammaproteobacteria; Competibacteraceae; Candidatus Competibacter.;" source="Candidatus Competibacter denitrificans Run_A_D11.;"
2,3-bisphosphoglycerate-independent phosphoglycerate mutase
PLM3_127_b2_sep16_scaffold_2207_10
RBG_16_Gamma2_65_34_curated, Gammaproteobacteria, Proteobacteria, Bacteria

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6792..8516
DNA (1725bp) protein (575aa)
Single-stranded-DNA-specific exonuclease RecJ Tax=endosymbiont of Tevnia jerichonana (vent Tica) RepID=G2FCL8_9GAMM
single-stranded-DNA-specific exonuclease
Tax=RBG_16_Gamma2_65_34_curated
PLM3_127_b2_sep16_scaffold_2207_11
unknown

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8536..8643
DNA (108bp) protein (36aa)

This feature has no annotations

PLM3_127_b2_sep16_scaffold_2207_12
endosymbiont of unidentified scaly snail isolate Monju, Gammaproteobacteria, Proteobacteria, Bacteria

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8765..9664
DNA (900bp) protein (300aa)
Peptide chain release factor 2 Tax=endosymbiont of unidentified scaly snail isolate Monju RepID=S6BTG4_9GAMM
Peptide chain release factor 2 {ECO:0000256|SAAS:SAAS00090452}; species="Bacteria; Proteobacteria; Gammaproteobacteria.;" source="endosymbiont of unidentified scaly snail isolate Monju.;"
peptide chain release factor 2
PLM3_127_b2_sep16_scaffold_2207_13
Methylococcus capsulatus, Methylococcus, Methylococcales, Gammaproteobacteria, Proteobacteria, Bacteria

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9664..11142
DNA (1479bp) protein (493aa)
lysS; lysyl-tRNA synthetase (EC:6.1.1.6)
Lysine--tRNA ligase {ECO:0000256|HAMAP-Rule:MF_00252, ECO:0000256|RuleBase:RU000336}; EC=6.1.1.6 {ECO:0000256|HAMAP-Rule:MF_00252, ECO:0000256|RuleBase:RU000336};; Lysyl-tRNA synthetase {ECO:0000256|HAMAP-Rule:MF_00252}; species="Bacteria; Proteobacteria; Gammaproteobacteria; Methylococcales; Methylococcaceae; Methylococcus.;" source="Methylococcus capsulatus (strain ATCC 33009 / NCIMB 11132 / Bath).;"
Lysine--tRNA ligase Tax=Methylococcus capsulatus (strain ATCC 33009 / NCIMB 11132 / Bath) RepID=Q60C10_METCA
PLM3_127_b2_sep16_scaffold_2207_14
Desulfovibrio vulgaris, Desulfovibrio, Desulfovibrionales, Deltaproteobacteria, Proteobacteria, Bacteria

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11156..11971
DNA (816bp) protein (272aa)
glutamate racemase (EC:5.1.1.3)
Glutamate racemase {ECO:0000256|HAMAP-Rule:MF_00258, ECO:0000256|SAAS:SAAS00031911}; EC=5.1.1.3 {ECO:0000256|HAMAP-Rule:MF_00258, ECO:0000256|SAAS:SAAS00041166};; species="Bacteria; Proteobacteria; Deltaproteobacteria; Desulfovibrionales; Desulfovibrionaceae; Desulfovibrio.;" source="Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB; 8303).;"
Glutamate racemase Tax=Desulfovibrio vulgaris RepID=A1VFK2_DESVV
PLM3_127_b2_sep16_scaffold_2207_15
Candidatus Contendobacter odensis, Candidatus Contendobacter, Gammaproteobacteria, Proteobacteria, Bacteria

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comp(11978..12817)
DNA (840bp) protein (280aa)
hypothetical protein Tax=Pseudomonas nitroreducens RepID=UPI0003132CA1
tRNA-modifying protein YgfZ {ECO:0000256|SAAS:SAAS00211200}; species="Bacteria; Proteobacteria; Gammaproteobacteria; Competibacteraceae; Candidatus Contendobacter.;" source="Candidatus Contendobacter odensis Run_B_J11.;"
glycine cleavage T protein (aminomethyl transferase)
PLM3_127_b2_sep16_scaffold_2207_16
Micavibrio aeruginosavorus, Micavibrio, Alphaproteobacteria, Proteobacteria, Bacteria

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13060..13455
DNA (396bp) protein (132aa)
Succinate dehydrogenase, cytochrome b556 subunit Tax=Micavibrio aeruginosavorus (strain ARL-13) RepID=G2KME0_MICAA
sdhC; succinate dehydrogenase, cytochrome b556 subunit
Succinate dehydrogenase, cytochrome b556 subunit {ECO:0000313|EMBL:AEP10234.1}; species="Bacteria; Proteobacteria; Alphaproteobacteria; Micavibrio.;" source="Micavibrio aeruginosavorus (strain ARL-13).;"
PLM3_127_b2_sep16_scaffold_2207_17
unknown

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13452..13538
DNA (87bp) protein (29aa)

This feature has no annotations

Displaying 17 items

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