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PLM3_127_b2_sep16_scaffold_2472

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Displaying 18 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
PLM3_127_b2_sep16_scaffold_2472_1
RBG_16_Gamma2_64_11_curated, Gammaproteobacteria, Proteobacteria, Bacteria

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1..1752
DNA (1752bp) protein (584aa)
Uncharacterized protein Tax=Thioalkalivibrio sp. (strain HL-EbGR7) RepID=B8GN03_THISH
hypothetical protein
Tax=RBG_16_Gamma2_64_11_curated
PLM3_127_b2_sep16_scaffold_2472_2
GWA2_Ignavibacteria_54_16_curated, Ignavibacteriales, Ignavibacteria, Ignavibacteriae, Bacteria

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1749..2999
DNA (1251bp) protein (417aa)
Major facilitator transporter bin=GWA2_Ignavibacteriae_54_16_partial species=Melioribacter roseus genus=Melioribacter taxon_order=Ignavibacteriales taxon_class=Ignavibacteria phylum=Ignavibacteriae tax=GWA2_Ignavibacteriae_54_16_partial organism_group=Ignavibacteria
major facilitator transporter
Tax=GWA2_Ignavibacteria_54_16_curated
PLM3_127_b2_sep16_scaffold_2472_3
Gemmatimonadetes bacterium KBS708, Gemmatimonadetes, Gemmatimonadetes, Bacteria

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comp(3014..3949)
DNA (936bp) protein (312aa)
NADP-dependent oxidoreductase domain protein
NADP-dependent oxidoreductase domain protein {ECO:0000313|EMBL:AHG89143.1}; species="Bacteria; Gemmatimonadetes.;" source="Gemmatimonadetes bacterium KBS708.;"
rsi:Runsl_1646 aldo/keto reductase bin=RBG9 species=RBG9 genus=RBG9 taxon_order=RBG9 taxon_class=RBG9 phylum=Chloroflexi tax=RBG9 organism_group=Chloroflexi
PLM3_127_b2_sep16_scaffold_2472_4
Candidatus Competibacter denitrificans, Candidatus Competibacter, Gammaproteobacteria, Proteobacteria, Bacteria

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comp(4075..4995)
DNA (921bp) protein (307aa)
Zinc metalloendopeptidase, M23 family Tax=Pelobacter carbinolicus (strain DSM 2380 / Gra Bd 1) RepID=Q3A4I6_PELCD
Putative Peptidase M23 {ECO:0000313|EMBL:CDI02047.1}; species="Bacteria; Proteobacteria; Gammaproteobacteria; Competibacteraceae; Candidatus Competibacter.;" source="Candidatus Competibacter denitrificans Run_A_D11.;"
zinc metalloendopeptidase
PLM3_127_b2_sep16_scaffold_2472_5
Haliangium ochraceum, Haliangium, Myxococcales, Deltaproteobacteria, Proteobacteria, Bacteria

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comp(4998..6125)
DNA (1128bp) protein (376aa)
FMN-dependent alpha-hydroxy acid dehydrogenase Tax=Haliangium ochraceum (strain DSM 14365 / JCM 11303 / SMP-2) RepID=D0LGI4_HALO1
FMN-dependent alpha-hydroxy acid dehydrogenase
FMN-dependent alpha-hydroxy acid dehydrogenase {ECO:0000313|EMBL:ACY12730.1}; species="Bacteria; Proteobacteria; Deltaproteobacteria; Myxococcales; Nannocystineae; Kofleriaceae; Haliangium.;" source="Haliangium ochraceum (strain DSM 14365 / JCM 11303 / SMP-2).;"
PLM3_127_b2_sep16_scaffold_2472_6
Opitutaceae bacterium TAV5, Opitutales, Opitutae, Verrucomicrobia, Bacteria

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comp(6142..6591)
DNA (450bp) protein (150aa)
Putative uncharacterized protein Tax=Opitutaceae bacterium TAV5 RepID=H1IL08_9BACT
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AHF92380.1}; species="Bacteria; Verrucomicrobia; Opitutae; Opitutales; Opitutaceae.;" source="Opitutaceae bacterium TAV5.;"
PLM3_127_b2_sep16_scaffold_2472_7

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comp(6616..7215)
DNA (600bp) protein (200aa)
Haloacid dehalogenase-type hydrolase Tax=mine drainage metagenome RepID=T0XZK7_9ZZZZ
Haloacid dehalogenase-type hydrolase {ECO:0000313|EMBL:EQD28286.1}; species="unclassified sequences; metagenomes; ecological metagenomes.;" source="mine drainage metagenome.;"
HAD superfamily hydrolase
PLM3_127_b2_sep16_scaffold_2472_8
R_Acidobacteria_65_29, Acidobacteria, Bacteria

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7300..9018
DNA (1719bp) protein (573aa)
Peptidoglycan-binding domain 1 Tax=Koribacter versatilis (strain Ellin345) RepID=Q1IV89_KORVE
peptidoglycan binding domain-containing protein
Tax=RIFCSPLOWO2_02_FULL_Acidobacteria_65_29_curated
PLM3_127_b2_sep16_scaffold_2472_9
uncultured Thiohalocapsa sp. PB-PSB1, Thiohalocapsa, Chromatiales, Gammaproteobacteria, Proteobacteria, Bacteria

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comp(9031..9618)
DNA (588bp) protein (196aa)
Uncharacterized protein Tax=uncultured Thiohalocapsa sp. PB-PSB1 RepID=V4IW47_9GAMM
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ESQ14587.1}; species="Bacteria; Proteobacteria; Gammaproteobacteria; Chromatiales; Chromatiaceae; Thiohalocapsa; environmental samples.;" source="uncultured Thiohalocapsa sp. PB-PSB1.;"
PLM3_127_b2_sep16_scaffold_2472_10
BJP_IG2102_Gammaproteobacteria_62_140, Gammaproteobacteria, Proteobacteria, Bacteria

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comp(9684..10892)
DNA (1209bp) protein (403aa)
diaminopimelate decarboxylase (EC:4.1.1.17 4.1.1.19)
Diaminopimelate decarboxylase Tax=Alteromonadales bacterium TW-7 RepID=A0XYE6_9GAMM
Tax=BJP_IG2102_Gammaproteobacteria_62_140
PLM3_127_b2_sep16_scaffold_2472_11
R_Gammaproteobacteria_61_13, Gammaproteobacteria, Proteobacteria, Bacteria

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comp(11278..12540)
DNA (1263bp) protein (421aa)
D-amino acid dehydrogenase small subunit (EC:1.4.99.1)
D-amino acid dehydrogenase small subunit Tax=Alkalilimnicola ehrlichii (strain ATCC BAA-1101 / DSM 17681 / MLHE-1) RepID=Q0ABL8_ALKEH
Tax=RIFCSPLOWO2_02_FULL_Gammaproteobacteria_61_13_curated
PLM3_127_b2_sep16_scaffold_2472_12
Rhodospirillum centenum, Rhodospirillum, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(12568..13680)
DNA (1113bp) protein (371aa)
leucine dehydrogenase (EC:1.4.1.9)
Leucine dehydrogenase {ECO:0000313|EMBL:ACI99173.1}; EC=1.4.1.9 {ECO:0000313|EMBL:ACI99173.1};; species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Rhodospirillaceae; Rhodospirillum.;" source="Rhodospirillum centenum (strain ATCC 51521 / SW).;"
Leucine dehydrogenase Tax=Rhodospirillum centenum (strain ATCC 51521 / SW) RepID=B6ITF5_RHOCS
PLM3_127_b2_sep16_scaffold_2472_13
Pseudomonas knackmussii, Pseudomonas, Pseudomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

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13843..14316
DNA (474bp) protein (158aa)
AsnC family transcriptional regulator Tax=Pseudomonas sp. (strain M1) RepID=L1HTZ3_PSEUO
ybaO; Leucine-responsive regulatory protein
Leucine-responsive regulatory protein {ECO:0000313|EMBL:CDF83950.1}; species="Bacteria; Proteobacteria; Gammaproteobacteria; Pseudomonadales; Pseudomonadaceae; Pseudomonas.;" source="Pseudomonas knackmussii (strain DSM 6978 / LMG 23759 / B13).;"
PLM3_127_b2_sep16_scaffold_2472_14
Nitrincola lacisaponensis, Nitrincola, Oceanospirillales, Gammaproteobacteria, Proteobacteria, Bacteria

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14320..15855
DNA (1536bp) protein (512aa)
Cell division protein FtsH {ECO:0000313|EMBL:KDE40635.1}; EC=3.4.24.- {ECO:0000313|EMBL:KDE40635.1};; species="Bacteria; Proteobacteria; Gammaproteobacteria; Oceanospirillales; Nitrincola.;" source="Nitrincola lacisaponensis.;"
AAA ATPase central domain protein Tax=Nitrosococcus halophilus (strain Nc4) RepID=D5C4F5_NITHN
ATPase AAA
PLM3_127_b2_sep16_scaffold_2472_15
GWA2_Rhodocyclales_65_20_curated, Rhodocyclales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(15870..16886)
DNA (1017bp) protein (339aa)
hypothetical protein Tax=Methylomonas sp. MK1 RepID=UPI00036E021F
translation factor
Tax=GWA2_Rhodocyclales_65_20_curated
PLM3_127_b2_sep16_scaffold_2472_16
Thiobacillus denitrificans, Thiobacillus, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

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comp(16906..17760)
DNA (855bp) protein (285aa)
Putative uncharacterized protein Tax=Thiobacillus denitrificans (strain ATCC 25259) RepID=Q3SJT7_THIDA
TPR repeat-containing protein
Uncharacterized protein {ECO:0000313|EMBL:AAZ97063.1}; species="Bacteria; Proteobacteria; Betaproteobacteria; Hydrogenophilales; Hydrogenophilaceae; Thiobacillus.;" source="Thiobacillus denitrificans (strain ATCC 25259).;"
PLM3_127_b2_sep16_scaffold_2472_17
Lysobacter arseniciresistens, Lysobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

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comp(17862..18245)
DNA (384bp) protein (128aa)
Uncharacterized protein {ECO:0000313|EMBL:KGM57453.1}; species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Lysobacter.;" source="Lysobacter arseniciresistens ZS79.;"
Putative uncharacterized protein bin=GWF1_Xanthomonadales_69_6 species=Thiomicrospira crunogena genus=Thiomicrospira taxon_order=Thiotrichales taxon_class=Gammaproteobacteria phylum=Proteobacteria tax=GWF1_Xanthomonadales_69_6 organism_group=Gammaproteobacteria
hypothetical protein
PLM3_127_b2_sep16_scaffold_2472_18
Thalassotalea sp. ND16A, Thalassotalea, Alteromonadales, Gammaproteobacteria, Proteobacteria, Bacteria

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comp(18342..19265)
DNA (924bp) protein (308aa)
Protease Do-like protein 7 Tax=Aegilops tauschii RepID=M8B752_AEGTA
Uncharacterized protein {ECO:0000313|EMBL:KGJ95745.1}; species="Bacteria; Proteobacteria; Gammaproteobacteria; Alteromonadales; Colwelliaceae; Thalassotalea.;" source="Thalassotalea sp. ND16A.;"
Displaying 18 items

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