ggKbase home page

PLM3_127_b2_sep16_scaffold_2958

Search features with annotation key words

Displaying items 1-30 of 31 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
PLM3_127_b2_sep16_scaffold_2958_1
Alkalilimnicola ehrlichii, Alkalilimnicola, Chromatiales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(3..701)
DNA (699bp) protein (233aa)
cysS; cysteinyl-tRNA synthetase (EC:6.1.1.16)
Cysteine--tRNA ligase {ECO:0000255|HAMAP-Rule:MF_00041}; EC=6.1.1.16 {ECO:0000255|HAMAP-Rule:MF_00041};; Cysteinyl-tRNA synthetase {ECO:0000255|HAMAP-Rule:MF_00041}; Short=CysRS {ECO:0000255|HAMAP-Rule:MF_00041};; species="Bacteria; Proteobacteria; Gammaproteobacteria; Chromatiales; Ectothiorhodospiraceae; Alkalilimnicola.;" source="Alkalilimnicola ehrlichii (strain ATCC BAA-1101 / DSM 17681 / MLHE-1).;"
Cysteine--tRNA ligase Tax=Alkalilimnicola ehrlichii (strain ATCC BAA-1101 / DSM 17681 / MLHE-1) RepID=SYC_ALKEH
PLM3_127_b2_sep16_scaffold_2958_2
Candidatus Competibacter denitrificans, Candidatus Competibacter, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(710..2116)
DNA (1407bp) protein (469aa)
Glutamate--tRNA ligase {ECO:0000256|HAMAP-Rule:MF_00022}; EC=6.1.1.17 {ECO:0000256|HAMAP-Rule:MF_00022};; Glutamyl-tRNA synthetase {ECO:0000256|HAMAP-Rule:MF_00022}; species="Bacteria; Proteobacteria; Gammaproteobacteria; Competibacteraceae; Candidatus Competibacter.;" source="Candidatus Competibacter denitrificans Run_A_D11.;"
glutamyl-tRNA synthetase (EC:6.1.1.17)
Glutamate--tRNA ligase 2 Tax=Nitrosococcus oceani RepID=SYE2_NITOC
PLM3_127_b2_sep16_scaffold_2958_3
RBG_16_Gammaproteobacteria_57_12_curated, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

2228..2812
DNA (585bp) protein (195aa)
ppiB; peptidyl-prolyl cis-trans isomerase B (EC:5.2.1.8)
cyclophilin Tax=Methylococcus capsulatus RepID=UPI00037C6153
Tax=RBG_16_Gammaproteobacteria_57_12_curated
PLM3_127_b2_sep16_scaffold_2958_4
R_Gamma2_65_16, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

2817..3539
DNA (723bp) protein (241aa)
hypothetical protein Tax=Arhodomonas aquaeolei RepID=UPI00037A0E58
UDP-2,3-diacylglucosamine hydrolase
Tax=RIFCSPHIGHO2_01_FULL_Gamma2_65_16_curated
PLM3_127_b2_sep16_scaffold_2958_5
RBG_13_Acidobacteria_68_16_curated, Acidobacteria, Bacteria

Not on your lists

comp(3512..3988)
DNA (477bp) protein (159aa)
Putative acetyltransferase Tax=Rubrivivax benzoatilyticus JA2 = ATCC BAA-35 RepID=F3LR87_9BURK
GCN5-like N-acetyltransferase
Tax=RBG_13_Acidobacteria_68_16_curated
PLM3_127_b2_sep16_scaffold_2958_6
Marinobacter santoriniensis, Marinobacter, Alteromonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(4001..4651)
DNA (651bp) protein (217aa)
tRNA--hydroxylase Tax=Marinobacter santoriniensis NKSG1 RepID=M7CUA0_9ALTE
tRNA--hydroxylase {ECO:0000313|EMBL:EMP55760.1}; species="Bacteria; Proteobacteria; Gammaproteobacteria; Alteromonadales; Alteromonadaceae; Marinobacter.;" source="Marinobacter santoriniensis NKSG1.;"
miaE; hydroxylase for synthesis of 2-methylthio-cis-ribozeatin in tRNA
PLM3_127_b2_sep16_scaffold_2958_7
RLO_Gammaproteobacteria_47_11, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(4648..5415)
DNA (768bp) protein (256aa)
Adenylate/guanylate cyclase family protein,protein kinase family protein Tax=Polaromonas sp. CF318 RepID=J3D5D8_9BURK
serine/threonine protein kinase-like protein
Tax=RifCSPlowO2_12_Gammaproteobacteria_47_11_curated
PLM3_127_b2_sep16_scaffold_2958_8
Sedimenticola sp. SIP-G1, Sedimenticola, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(5932..7002)
DNA (1071bp) protein (357aa)
hypothetical protein Tax=Thioalkalivibrio thiocyanodenitrificans RepID=UPI000368D818
Uncharacterized protein {ECO:0000313|EMBL:AKH19020.1}; species="Bacteria; Proteobacteria; Gammaproteobacteria; Sedimenticola.;" source="Sedimenticola sp. SIP-G1.;"
putative glycerate kinase
PLM3_127_b2_sep16_scaffold_2958_9
Methylococcus capsulatus, Methylococcus, Methylococcales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(7223..8569)
DNA (1347bp) protein (449aa)
purF; amidophosphoribosyltransferase (EC:2.4.2.14)
Amidophosphoribosyltransferase {ECO:0000256|HAMAP-Rule:MF_01931, ECO:0000256|PIRNR:PIRNR000485}; Short=ATase {ECO:0000256|HAMAP-Rule:MF_01931, ECO:0000256|PIRNR:PIRNR000485};; EC=2.4.2.14 {ECO:0000256|HAMAP-Rule:MF_01931, ECO:0000256|PIRNR:PIRNR000485};; Glutamine phosphoribosylpyrophosphate amidotransferase {ECO:0000256|HAMAP-Rule:MF_01931, ECO:0000256|PIRNR:PIRNR000485}; species="Bacteria; Proteobacteria; Gammaproteobacteria; Methylococcales; Methylococcaceae; Methylococcus.;" source="Methylococcus capsulatus (strain ATCC 33009 / NCIMB 11132 / Bath).;"
Amidophosphoribosyltransferase Tax=Methylococcus capsulatus (strain ATCC 33009 / NCIMB 11132 / Bath) RepID=Q604P9_METCA
PLM3_127_b2_sep16_scaffold_2958_10
Thiobacillus prosperus, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(8602..9078)
DNA (477bp) protein (159aa)
colicin V production CvpA Tax=Thioalkalivibrio sp. ALJ16 RepID=UPI00036990ED
Colicin V production protein {ECO:0000313|EMBL:KFZ89811.1}; species="Bacteria; Proteobacteria; Gammaproteobacteria.;" source="Thiobacillus prosperus.;"
colicin V production protein
PLM3_127_b2_sep16_scaffold_2958_11
R_Gammaproteobacteria_61_13, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(9144..9815)
DNA (672bp) protein (224aa)
hypothetical protein Tax=Arhodomonas aquaeolei RepID=UPI0003678C3A
sporulation protein
Tax=RIFCSPLOWO2_02_FULL_Gammaproteobacteria_61_13_curated
PLM3_127_b2_sep16_scaffold_2958_12
Candidatus Contendobacter odensis, Candidatus Contendobacter, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(9973..11112)
DNA (1140bp) protein (380aa)
Bifunctional: folylpolyglutamate synthase dihydrofolate synthase {ECO:0000313|EMBL:CDH43417.1}; EC=6.3.2.12 {ECO:0000313|EMBL:CDH43417.1};; EC=6.3.2.17 {ECO:0000313|EMBL:CDH43417.1};; species="Bacteria; Proteobacteria; Gammaproteobacteria; Competibacteraceae; Candidatus Contendobacter.;" source="Candidatus Contendobacter odensis Run_B_J11.;"
Folylpolyglutamate synthetase bin=GWE1_T_denit_62_9 species=Thiobacillus denitrificans genus=Thiobacillus taxon_order=Hydrogenophilales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=GWE1_T_denit_62_9 organism_group=Betaproteobacteria organism_desc=exp 2.9 Mb
bifunctional folylpolyglutamate synthase/dihydrofolate synthase
PLM3_127_b2_sep16_scaffold_2958_13
RIFOXYD12_FULL_Gammaproteobacteria_61_37_curated, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(11154..12017)
DNA (864bp) protein (288aa)
accD; acetyl-CoA carboxylase, carboxyl transferase subunit beta (EC:6.4.1.2)
Acetyl-coenzyme A carboxylase carboxyl transferase subunit beta Tax=Methylococcus capsulatus (strain ATCC 33009 / NCIMB 11132 / Bath) RepID=ACCD_METCA
Tax=RIFOXYD12_FULL_Gammaproteobacteria_61_37_curated
PLM3_127_b2_sep16_scaffold_2958_14
Coxiella burnetii, Coxiella, Legionellales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(12014..12826)
DNA (813bp) protein (271aa)
truA; tRNA pseudouridine synthase A (EC:5.4.99.12)
tRNA pseudouridine synthase A {ECO:0000255|HAMAP-Rule:MF_00171}; EC=5.4.99.12 {ECO:0000255|HAMAP-Rule:MF_00171};; tRNA pseudouridine(38-40) synthase {ECO:0000255|HAMAP-Rule:MF_00171}; tRNA pseudouridylate synthase I {ECO:0000255|HAMAP-Rule:MF_00171}; tRNA-uridine isomerase I {ECO:0000255|HAMAP-Rule:MF_00171}; species="Bacteria; Proteobacteria; Gammaproteobacteria; Legionellales; Coxiellaceae; Coxiella.;" source="Coxiella burnetii (strain CbuG_Q212) (Coxiella burnetii (strain; Q212)).;"
tRNA pseudouridine synthase A Tax=Thioalkalivibrio RepID=UPI000373F721
PLM3_127_b2_sep16_scaffold_2958_15
Thioalkalivibrio sulfidiphilus, Thioalkalivibrio, Chromatiales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(12892..16038)
DNA (3147bp) protein (1049aa)
Tfp pilus assembly protein FimV-like protein Tax=Thioalkalivibrio sp. (strain HL-EbGR7) RepID=B8GQE0_THISH
Tfp pilus assembly protein FimV-like protein
Tfp pilus assembly protein FimV-like protein {ECO:0000313|EMBL:ACL72335.1}; Flags: Precursor;; species="Bacteria; Proteobacteria; Gammaproteobacteria; Chromatiales; Ectothiorhodospiraceae; Thioalkalivibrio.;" source="Thioalkalivibrio sulfidiphilus (strain HL-EbGR7).;"
PLM3_127_b2_sep16_scaffold_2958_16
R_Gamma2_65_16, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(16141..17121)
DNA (981bp) protein (327aa)
semialdehyde dehydrogenase Tax=Thioalkalivibrio sp. ALJ17 RepID=UPI00036AF2F9
aspartate-semialdehyde dehydrogenase
Tax=RIFCSPHIGHO2_01_FULL_Gamma2_65_16_curated
PLM3_127_b2_sep16_scaffold_2958_17
Pseudohaliea rubra, Pseudohaliea, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(17245..18339)
DNA (1095bp) protein (365aa)
Chorismate synthase {ECO:0000256|HAMAP-Rule:MF_00300, ECO:0000256|RuleBase:RU000605}; Short=CS {ECO:0000256|HAMAP-Rule:MF_00300};; EC=4.2.3.5 {ECO:0000256|HAMAP-Rule:MF_00300, ECO:0000256|RuleBase:RU000605};; 5-enolpyruvylshikimate-3-phosphate phospholyase {ECO:0000256|HAMAP-Rule:MF_00300}; species="Bacteria; Proteobacteria; Gammaproteobacteria; OMG group; OM60 clade; Pseudohaliea.;" source="Haliea rubra DSM 19751.;"
aroC; chorismate synthase (EC:4.2.3.5)
Chorismate synthase Tax=Marinobacter santoriniensis NKSG1 RepID=M7DCX1_9ALTE
PLM3_127_b2_sep16_scaffold_2958_18
R_Gammaproteobacteria_61_13, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(18345..19289)
DNA (945bp) protein (315aa)
N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase Tax=Thioalkalivibrio sp. ALJ17 RepID=UPI00036AB782
N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase
Tax=RIFCSPLOWO2_02_FULL_Gammaproteobacteria_61_13_curated
PLM3_127_b2_sep16_scaffold_2958_19
Spiribacter sp. UAH-SP71, Spiribacter, Chromatiales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

19311..19934
DNA (624bp) protein (208aa)
Uncharacterized protein Tax=Spiribacter sp. UAH-SP71 RepID=U5T7Q4_9GAMM
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AGY92418.1}; species="Bacteria; Proteobacteria; Gammaproteobacteria; Chromatiales; Ectothiorhodospiraceae; Spiribacter.;" source="Spiribacter sp. UAH-SP71.;"
PLM3_127_b2_sep16_scaffold_2958_20
uncultured Thiohalocapsa sp. PB-PSB1, Thiohalocapsa, Chromatiales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

19956..20855
DNA (900bp) protein (300aa)
Phosphatidylserine decarboxylase {ECO:0000256|SAAS:SAAS00093350}; EC=4.1.1.65 {ECO:0000256|SAAS:SAAS00093350};; Flags: Fragment;; species="Bacteria; Proteobacteria; Gammaproteobacteria; Chromatiales; Chromatiaceae; Thiohalocapsa; environmental samples.;" source="uncultured Thiohalocapsa sp. PB-PSB1.;"
Uncharacterized protein (Fragment) Tax=uncultured Thiohalocapsa sp. PB-PSB1 RepID=V4JKH1_9GAMM
phosphatidylserine decarboxylase
PLM3_127_b2_sep16_scaffold_2958_21
RBG_16_Gamma2_64_11_curated, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

21263..21673
DNA (411bp) protein (137aa)
poxB regulator PoxA (EC:6.1.1.6)
Lysyl-tRNA synthetase-related protein Tax=Nitrococcus mobilis Nb-231 RepID=A4BSZ0_9GAMM
Tax=RBG_16_Gamma2_64_11_curated
PLM3_127_b2_sep16_scaffold_2958_22
Bosea sp. LC85, Bosea, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

21685..22170
DNA (486bp) protein (162aa)
Free methionine-R-sulfoxide reductase {ECO:0000313|EMBL:KFC75359.1}; EC=1.8.4.14 {ECO:0000313|EMBL:KFC75359.1};; species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bosea.;" source="Bosea sp. LC85.;"
hypothetical protein Tax=Rudaea cellulosilytica RepID=UPI000360ABC4
hypothetical protein
PLM3_127_b2_sep16_scaffold_2958_23
Nitrococcus mobilis, Nitrococcus, Chromatiales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(22235..22804)
DNA (570bp) protein (190aa)
Elongation factor P Tax=Nitrococcus mobilis Nb-231 RepID=A4BSY9_9GAMM
Elongation factor P {ECO:0000256|HAMAP-Rule:MF_00141}; Short=EF-P {ECO:0000256|HAMAP-Rule:MF_00141};; species="Bacteria; Proteobacteria; Gammaproteobacteria; Chromatiales; Ectothiorhodospiraceae; Nitrococcus.;" source="Nitrococcus mobilis Nb-231.;"
Elongation factor P
PLM3_127_b2_sep16_scaffold_2958_24
Thiobacillus prosperus, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

23008..25083
DNA (2076bp) protein (692aa)
Putative diguanylate phosphodiesterase Tax=Thioalkalivibrio sp. (strain HL-EbGR7) RepID=B8GQC0_THISH
Putative diguanylate cyclase {ECO:0000313|EMBL:KFZ91126.1}; species="Bacteria; Proteobacteria; Gammaproteobacteria.;" source="Thiobacillus prosperus.;"
diguanylate phosphodiesterase
PLM3_127_b2_sep16_scaffold_2958_25
BJP_IG2102_Gammaproteobacteria_62_140, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(25094..27349)
DNA (2256bp) protein (752aa)
DNA topoisomerase IV subunit A (EC:5.99.1.3)
DNA topoisomerase IV subunit A Tax=Thioalkalivibrio thiocyanodenitrificans RepID=UPI00036E3670
Tax=BJP_IG2102_Gammaproteobacteria_62_140
PLM3_127_b2_sep16_scaffold_2958_26
BJP_IG2102_Gammaproteobacteria_62_140, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(27346..29232)
DNA (1887bp) protein (629aa)
DNA topoisomerase IV subunit B (EC:5.99.1.3)
DNA topoisomerase IV subunit B Tax=Thioalkalivibrio sp. ALJ17 RepID=UPI00037F21F1
Tax=BJP_IG2102_Gammaproteobacteria_62_140
PLM3_127_b2_sep16_scaffold_2958_27
RBG_16_Gamma2_60_9_curated, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(29393..29983)
DNA (591bp) protein (197aa)
hypothetical protein Tax=Lamprocystis purpurea RepID=UPI00036820B9
hypothetical protein
Tax=RBG_16_Gamma2_60_9_curated
PLM3_127_b2_sep16_scaffold_2958_28
RBG_19FT_COMBO_Gammaproteobacteria_61_10_curated, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(29990..31366)
DNA (1377bp) protein (459aa)
Fe-S oxidoreductase Tax=Thioalkalivibrio thiocyanodenitrificans RepID=UPI0003784BD4
hypothetical protein
Tax=RBG_19FT_COMBO_Gammaproteobacteria_61_10_curated
PLM3_127_b2_sep16_scaffold_2958_29
uncultured Thiohalocapsa sp. PB-PSB1, Thiohalocapsa, Chromatiales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(31372..31785)
DNA (414bp) protein (138aa)
Rubrerythrin Tax=uncultured Thiohalocapsa sp. PB-PSB1 RepID=V4JQB6_9GAMM
Rubrerythrin {ECO:0000313|EMBL:ESQ14505.1}; species="Bacteria; Proteobacteria; Gammaproteobacteria; Chromatiales; Chromatiaceae; Thiohalocapsa; environmental samples.;" source="uncultured Thiohalocapsa sp. PB-PSB1.;"
rubrerythrin
PLM3_127_b2_sep16_scaffold_2958_30
Methylophaga aminisulfidivorans, Methylophaga, Thiotrichales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

31941..32189
DNA (249bp) protein (83aa)
Exodeoxyribonuclease 7 small subunit {ECO:0000256|HAMAP-Rule:MF_00337, ECO:0000256|SAAS:SAAS00198685}; EC=3.1.11.6 {ECO:0000256|HAMAP-Rule:MF_00337, ECO:0000256|SAAS:SAAS00198686};; Exodeoxyribonuclease VII small subunit {ECO:0000256|HAMAP-Rule:MF_00337}; species="Bacteria; Proteobacteria; Gammaproteobacteria; Thiotrichales; Piscirickettsiaceae; Methylophaga.;" source="Methylophaga aminisulfidivorans MP.;"
Exodeoxyribonuclease 7 small subunit Tax=Methylophaga aminisulfidivorans MP RepID=F5SUN4_9GAMM
exodeoxyribonuclease VII small subunit
Displaying items 1-30 of 31 in total

View Taxonomy