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PLM3_127_b2_sep16_scaffold_11477

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Displaying 12 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
PLM3_127_b2_sep16_scaffold_11477_1
R_Betaproteobacteria_62_17, Betaproteobacteria, Proteobacteria, Bacteria

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3..326
DNA (324bp) protein (108aa)
ligA1; protocatechuate 4,5-dioxygenase subunit alpha (EC:1.13.11.8)
Protocatechuate 4,5-dioxygenase Tax=Azoarcus sp. (strain BH72) RepID=A1K8I5_AZOSB
Tax=RIFCSPLOWO2_02_FULL_Betaproteobacteria_62_17_curated
PLM3_127_b2_sep16_scaffold_11477_2
Sulfuritalea hydrogenivorans, Sulfuritalea, Rhodocyclales, Betaproteobacteria, Proteobacteria, Bacteria

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330..1085
DNA (756bp) protein (252aa)
Protocatechuate 4,5-dioxygenase beta chain Tax=Azoarcus sp. (strain BH72) RepID=A1K8I4_AZOSB
protocatechuate 4,5-dioxygenase subunit beta
Protocatechuate 4,5-dioxygenase subunit beta {ECO:0000313|EMBL:BAO29046.1}; species="Bacteria; Proteobacteria; Betaproteobacteria; Rhodocyclales; Rhodocyclaceae; Sulfuritalea.;" source="Sulfuritalea hydrogenivorans sk43H.;"
PLM3_127_b2_sep16_scaffold_11477_3
Thauera sp. 63, Thauera, Rhodocyclales, Betaproteobacteria, Proteobacteria, Bacteria

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1100..1258
DNA (159bp) protein (53aa)
Protocatechuate 4,5-dioxygenase subunit beta Tax=Thauera sp. 63 RepID=N6Y605_9RHOO
Protocatechuate 4,5-dioxygenase subunit beta {ECO:0000313|EMBL:ENO77508.1}; species="Bacteria; Proteobacteria; Betaproteobacteria; Rhodocyclales; Rhodocyclaceae; Thauera.;" source="Thauera sp. 63.;"
ligB1; protocatechuate 4,5-dioxygenase subunit beta
PLM3_127_b2_sep16_scaffold_11477_4
Methylophaga nitratireducenticrescens, Methylophaga, Thiotrichales, Gammaproteobacteria, Proteobacteria, Bacteria

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1400..2710
DNA (1311bp) protein (437aa)
glucose-1-phosphate adenylyltransferase (EC:2.7.7.27)
Glucose-1-phosphate adenylyltransferase {ECO:0000256|HAMAP-Rule:MF_00624, ECO:0000256|RuleBase:RU003565}; EC=2.7.7.27 {ECO:0000256|HAMAP-Rule:MF_00624, ECO:0000256|RuleBase:RU003565};; ADP-glucose pyrophosphorylase {ECO:0000256|HAMAP-Rule:MF_00624}; ADP-glucose synthase {ECO:0000256|HAMAP-Rule:MF_00624}; species="Bacteria; Proteobacteria; Gammaproteobacteria; Thiotrichales; Piscirickettsiaceae; Methylophaga.;" source="Methylophaga nitratireducenticrescens (strain ATCC BAA-2433 / DSM; 25689 / JAM1).;"
Glucose-1-phosphate adenylyltransferase Tax=Methylophaga nitratireducenticrescens (strain ATCC BAA-2433 / DSM 25689 / JAM1) RepID=I1XLS8_METNJ
PLM3_127_b2_sep16_scaffold_11477_5
CG_Hydro_01, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

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2729..2971
DNA (243bp) protein (81aa)
Fatty acid hydroxylase
Tax=CG_Hydro_01
PLM3_127_b2_sep16_scaffold_11477_6

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comp(4105..5034)
DNA (930bp) protein (310aa)
hypothetical protein Tax=Thiobacillus thioparus RepID=UPI00037DF960
Uncharacterized protein {ECO:0000313|EMBL:KKN86117.1}; species="unclassified sequences; metagenomes; ecological metagenomes.;" source="marine sediment metagenome.;"
ribose-phosphate pyrophosphokinase
PLM3_127_b2_sep16_scaffold_11477_7
R_Gamma2_65_16, Gammaproteobacteria, Proteobacteria, Bacteria

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5108..5713
DNA (606bp) protein (202aa)
pyrazinamidase/nicotinamidase pxnc Tax=Methylococcus capsulatus RepID=UPI0002D9D013
pyrazinamidase/nicotinamidase
Tax=RIFCSPHIGHO2_01_FULL_Gamma2_65_16_curated
PLM3_127_b2_sep16_scaffold_11477_8
R_Gallionellales_57_47, Gallionellales, Betaproteobacteria, Proteobacteria, Bacteria

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5710..7074
DNA (1365bp) protein (455aa)
nicotinate phosphoribosyltransferase (EC:2.4.2.11)
hypothetical protein Tax=Thiobacillus thioparus RepID=UPI0003777EB8
Tax=RIFCSPLOWO2_02_FULL_Gallionellales_57_47_curated
PLM3_127_b2_sep16_scaffold_11477_9
RIFOXYD1_FULL_Hydrogenophilales_62_11_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

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comp(7132..7575)
DNA (444bp) protein (148aa)
Heat shock protein Hsp20 Tax=Acidithiobacillus RepID=B5EKD0_ACIF5
heat shock protein Hsp20
Tax=RIFOXYD1_FULL_Hydrogenophilales_62_11_curated
PLM3_127_b2_sep16_scaffold_11477_10
Azospirillum lipoferum, Azospirillum, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(7739..9223)
DNA (1485bp) protein (495aa)
Histidine kinase {ECO:0000256|SAAS:SAAS00155656}; EC=2.7.13.3 {ECO:0000256|SAAS:SAAS00155656};; species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Rhodospirillaceae; Azospirillum.;" source="Azospirillum lipoferum (strain 4B).;"
Hybrid sensor histidine kinase Tax=Azospirillum lipoferum (strain 4B) RepID=G7Z2P7_AZOL4
Hybrid sensor histidine kinase
PLM3_127_b2_sep16_scaffold_11477_11
Pseudomonas knackmussii, Pseudomonas, Pseudomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

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comp(9180..10235)
DNA (1056bp) protein (352aa)
Putative universal stress protein Tax=Pseudomonas denitrificans ATCC 13867 RepID=M4XL10_PSEDE
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:CDF82282.1}; species="Bacteria; Proteobacteria; Gammaproteobacteria; Pseudomonadales; Pseudomonadaceae; Pseudomonas.;" source="Pseudomonas knackmussii (strain DSM 6978 / LMG 23759 / B13).;"
PLM3_127_b2_sep16_scaffold_11477_12

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comp(10255..10434)
DNA (180bp) protein (60aa)
Two-component response regulator (Fragment) Tax=mine drainage metagenome RepID=T0Z5V3_9ZZZZ
Two-component response regulator {ECO:0000313|EMBL:EQD40413.1}; Flags: Fragment;; species="unclassified sequences; metagenomes; ecological metagenomes.;" source="mine drainage metagenome.;"
two component LuxR family transcriptional regulator
Displaying 12 items

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