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PLM3_127_b2_sep16_scaffold_4551

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Displaying 22 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
PLM3_127_b2_sep16_scaffold_4551_1
RIFOXYA1_FULL_Xanthomonadales_69_10_curated, Gammaproteobacteria, Proteobacteria, Bacteria

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3..209
DNA (207bp) protein (69aa)
hypothetical protein Tax=Rudaea cellulosilytica RepID=UPI00035D3BF2
hypothetical protein
Tax=RIFOXYA1_FULL_Xanthomonadales_69_10_curated
PLM3_127_b2_sep16_scaffold_4551_2

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comp(448..771)
DNA (324bp) protein (108aa)
Peptidase M41 domain protein {ECO:0000313|EMBL:EQD56414.1}; EC=3.4.24.- {ECO:0000313|EMBL:EQD56414.1};; Flags: Fragment;; species="unclassified sequences; metagenomes; ecological metagenomes.;" source="mine drainage metagenome.;"
Peptidase M41 domain protein (Fragment) Tax=mine drainage metagenome RepID=T1BT83_9ZZZZ
ATP-dependent metalloprotease FtsH
PLM3_127_b2_sep16_scaffold_4551_3
Candidatus Competibacter denitrificans, Candidatus Competibacter, Gammaproteobacteria, Proteobacteria, Bacteria

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comp(784..2217)
DNA (1434bp) protein (478aa)
ATP-dependent zinc metalloprotease FtsH {ECO:0000256|HAMAP-Rule:MF_01458}; EC=3.4.24.- {ECO:0000256|HAMAP-Rule:MF_01458};; species="Bacteria; Proteobacteria; Gammaproteobacteria; Competibacteraceae; Candidatus Competibacter.;" source="Candidatus Competibacter denitrificans Run_A_D11.;"
ATP-dependent metalloprotease Tax=Singularimonas variicoloris RepID=UPI00037EE3EF
hflB; ATP-dependent metalloprotease
PLM3_127_b2_sep16_scaffold_4551_4
Thioalkalivibrio sulfidiphilus, Thioalkalivibrio, Chromatiales, Gammaproteobacteria, Proteobacteria, Bacteria

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comp(2368..2931)
DNA (564bp) protein (188aa)
Ribosomal RNA large subunit methyltransferase E {ECO:0000255|HAMAP-Rule:MF_01547}; EC=2.1.1.166 {ECO:0000255|HAMAP-Rule:MF_01547};; 23S rRNA Um2552 methyltransferase {ECO:0000255|HAMAP-Rule:MF_01547}; rRNA (uridine-2'-O-)-methyltransferase {ECO:0000255|HAMAP-Rule:MF_01547}; species="Bacteria; Proteobacteria; Gammaproteobacteria; Chromatiales; Ectothiorhodospiraceae; Thioalkalivibrio.;" source="Thioalkalivibrio sulfidiphilus (strain HL-EbGR7).;"
23S rRNA methyltransferase Tax=Thioalkalivibrio thiocyanodenitrificans RepID=UPI00037C9836
ribosomal RNA methyltransferase RrmJ/FtsJ
PLM3_127_b2_sep16_scaffold_4551_5
Thioalkalivibrio sp. K90mix, Thioalkalivibrio, Chromatiales, Gammaproteobacteria, Proteobacteria, Bacteria

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comp(2965..3258)
DNA (294bp) protein (98aa)
RNA-binding protein Tax=Thioalkalivibrio RepID=UPI00036062D0
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ADC71216.1}; species="Bacteria; Proteobacteria; Gammaproteobacteria; Chromatiales; Ectothiorhodospiraceae; Thioalkalivibrio.;" source="Thioalkalivibrio sp. (strain K90mix).;"
PLM3_127_b2_sep16_scaffold_4551_6
Thiorhodospira sibirica, Thiorhodospira, Chromatiales, Gammaproteobacteria, Proteobacteria, Bacteria

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comp(3251..3727)
DNA (477bp) protein (159aa)
transcription elongation factor GreA Tax=Arhodomonas aquaeolei RepID=UPI0003754080
Transcription elongation factor GreA {ECO:0000256|HAMAP-Rule:MF_00105, ECO:0000256|SAAS:SAAS00018706}; Transcript cleavage factor GreA {ECO:0000256|HAMAP-Rule:MF_00105}; species="Bacteria; Proteobacteria; Gammaproteobacteria; Chromatiales; Ectothiorhodospiraceae; Thiorhodospira.;" source="Thiorhodospira sibirica ATCC 700588.;"
transcription elongation factor GreA
PLM3_127_b2_sep16_scaffold_4551_7

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comp(3724..4218)
DNA (495bp) protein (165aa)
Carbamoyl-phosphate synthase, large subunit (Fragment) Tax=mine drainage metagenome RepID=T1BM17_9ZZZZ
Carbamoyl-phosphate synthase, large subunit {ECO:0000313|EMBL:EQD70817.1}; Flags: Fragment;; species="unclassified sequences; metagenomes; ecological metagenomes.;" source="mine drainage metagenome.;"
carbamoyl-phosphate synthase large subunit
PLM3_127_b2_sep16_scaffold_4551_8
Sedimenticola sp. SIP-G1, Sedimenticola, Gammaproteobacteria, Proteobacteria, Bacteria

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comp(4303..6948)
DNA (2646bp) protein (882aa)
Carbamoyl phosphate synthase large subunit {ECO:0000313|EMBL:AKH20354.1}; EC=6.3.5.5 {ECO:0000313|EMBL:AKH20354.1};; species="Bacteria; Proteobacteria; Gammaproteobacteria; Sedimenticola.;" source="Sedimenticola sp. SIP-G1.;"
Carbamoyl-phosphate synthase large chain Tax=endosymbiont of unidentified scaly snail isolate Monju RepID=S6BTM2_9GAMM
carbamoyl-phosphate synthase large subunit
PLM3_127_b2_sep16_scaffold_4551_9
Thioalkalivibrio sulfidiphilus, Thioalkalivibrio, Chromatiales, Gammaproteobacteria, Proteobacteria, Bacteria

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comp(6935..8122)
DNA (1188bp) protein (396aa)
Carbamoyl-phosphate synthase small chain {ECO:0000255|HAMAP-Rule:MF_01209}; EC=6.3.5.5 {ECO:0000255|HAMAP-Rule:MF_01209};; Carbamoyl-phosphate synthetase glutamine chain {ECO:0000255|HAMAP-Rule:MF_01209}; species="Bacteria; Proteobacteria; Gammaproteobacteria; Chromatiales; Ectothiorhodospiraceae; Thioalkalivibrio.;" source="Thioalkalivibrio sulfidiphilus (strain HL-EbGR7).;"
Carbamoyl-phosphate synthase small chain Tax=Thioalkalivibrio sp. (strain HL-EbGR7) RepID=CARA_THISH
carbamoyl-phosphate synthase small subunit
PLM3_127_b2_sep16_scaffold_4551_10
Spiribacter sp. UAH-SP71, Spiribacter, Chromatiales, Gammaproteobacteria, Proteobacteria, Bacteria

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comp(8355..9116)
DNA (762bp) protein (254aa)
4-hydroxy-tetrahydrodipicolinate reductase {ECO:0000256|HAMAP-Rule:MF_00102, ECO:0000256|SAAS:SAAS00018068}; Short=HTPA reductase {ECO:0000256|HAMAP-Rule:MF_00102};; EC=1.17.1.8 {ECO:0000256|HAMAP-Rule:MF_00102, ECO:0000256|SAAS:SAAS00018030};; species="Bacteria; Proteobacteria; Gammaproteobacteria; Chromatiales; Ectothiorhodospiraceae; Spiribacter.;" source="Spiribacter sp. UAH-SP71.;"
4-hydroxy-tetrahydrodipicolinate reductase Tax=Spiribacter sp. UAH-SP71 RepID=U5T3G4_9GAMM
hypothetical protein
PLM3_127_b2_sep16_scaffold_4551_11
Pseudomonas sp. 12M76_air, Pseudomonas, Pseudomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

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comp(9149..10282)
DNA (1134bp) protein (378aa)
Chaperone protein DnaJ Tax=Nitrosococcus halophilus (strain Nc4) RepID=D5C1C7_NITHN
Chaperone protein DnaJ {ECO:0000256|HAMAP-Rule:MF_01152, ECO:0000256|SAAS:SAAS00053159}; species="Bacteria; Proteobacteria; Gammaproteobacteria; Pseudomonadales; Pseudomonadaceae; Pseudomonas.;" source="Pseudomonas sp. 12M76_air.;"
chaperone protein DnaJ
PLM3_127_b2_sep16_scaffold_4551_12
Nitrincola sp. AK23, Nitrincola, Oceanospirillales, Gammaproteobacteria, Proteobacteria, Bacteria

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comp(10425..11663)
DNA (1239bp) protein (413aa)
molecular chaperone DnaK Tax=Thioalkalivibrio thiocyanodenitrificans RepID=UPI00037687DC
Chaperone protein DnaK {ECO:0000256|HAMAP-Rule:MF_00332}; HSP70 {ECO:0000256|HAMAP-Rule:MF_00332}; Heat shock 70 kDa protein {ECO:0000256|HAMAP-Rule:MF_00332}; Heat shock protein 70 {ECO:0000256|HAMAP-Rule:MF_00332}; species="Bacteria; Proteobacteria; Gammaproteobacteria; Oceanospirillales; Nitrincola.;" source="Nitrincola sp. AK23.;"
dnaK; molecular chaperone DnaK
PLM3_127_b2_sep16_scaffold_4551_13
Solemya velum gill symbiont, Gammaproteobacteria, Proteobacteria, Bacteria

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comp(11641..12363)
DNA (723bp) protein (241aa)
molecular chaperone DnaK Tax=Thiothrix disciformis RepID=UPI0003829938
Chaperone protein DnaK {ECO:0000256|HAMAP-Rule:MF_00332}; HSP70 {ECO:0000256|HAMAP-Rule:MF_00332}; Heat shock 70 kDa protein {ECO:0000256|HAMAP-Rule:MF_00332}; Heat shock protein 70 {ECO:0000256|HAMAP-Rule:MF_00332}; species="Bacteria; Proteobacteria; Gammaproteobacteria; sulfur-oxidizing symbionts.;" source="Solemya velum gill symbiont.;"
molecular chaperone DnaK
PLM3_127_b2_sep16_scaffold_4551_14
Halorhodospira halophila, Halorhodospira, Chromatiales, Gammaproteobacteria, Proteobacteria, Bacteria

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comp(12429..13013)
DNA (585bp) protein (195aa)
Protein GrpE Tax=Halorhodospira halophila (strain DSM 244 / SL1) RepID=GRPE_HALHL
GrpE protein HSP-70 cofactor
Protein GrpE {ECO:0000255|HAMAP-Rule:MF_01151}; HSP-70 cofactor {ECO:0000255|HAMAP-Rule:MF_01151}; species="Bacteria; Proteobacteria; Gammaproteobacteria; Chromatiales; Ectothiorhodospiraceae; Halorhodospira.;" source="Halorhodospira halophila (strain DSM 244 / SL1) (Ectothiorhodospira; halophila (strain DSM 244 / SL1)).;"
PLM3_127_b2_sep16_scaffold_4551_15
BJP_IG2102_Gammaproteobacteria_62_140, Gammaproteobacteria, Proteobacteria, Bacteria

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comp(13094..14152)
DNA (1059bp) protein (353aa)
HrcA family transcriptional regulator Tax=Thioalkalivibrio thiocyanodenitrificans RepID=UPI00037C16E1
heat-inducible transcription repressor HrcA
Tax=BJP_IG2102_Gammaproteobacteria_62_140
PLM3_127_b2_sep16_scaffold_4551_16
Thiorhodococcus sp. AK35, Thiorhodococcus, Chromatiales, Gammaproteobacteria, Proteobacteria, Bacteria

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14311..15231
DNA (921bp) protein (307aa)
NAD kinase {ECO:0000256|HAMAP-Rule:MF_00361, ECO:0000256|SAAS:SAAS00037468}; EC=2.7.1.23 {ECO:0000256|HAMAP-Rule:MF_00361, ECO:0000256|SAAS:SAAS00037533};; ATP-dependent NAD kinase {ECO:0000256|HAMAP-Rule:MF_00361}; species="Bacteria; Proteobacteria; Gammaproteobacteria; Chromatiales; Chromatiaceae; Thiorhodococcus.;" source="Thiorhodococcus sp. AK35.;"
NAD(+) kinase (EC:2.7.1.23)
Probable inorganic polyphosphate/ATP-NAD kinase Tax=sulfur-oxidizing symbionts RepID=G2DFX9_9GAMM
PLM3_127_b2_sep16_scaffold_4551_17
BJP_IG2102_Gammaproteobacteria_62_140, Gammaproteobacteria, Proteobacteria, Bacteria

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15235..16932
DNA (1698bp) protein (566aa)
DNA repair protein RecN Tax=Thioalkalivibrio sp. (strain HL-EbGR7) RepID=B8GNW7_THISH
recombination and repair protein
Tax=BJP_IG2102_Gammaproteobacteria_62_140
PLM3_127_b2_sep16_scaffold_4551_18
unknown

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17076..17255
DNA (180bp) protein (60aa)

This feature has no annotations

PLM3_127_b2_sep16_scaffold_4551_19
unknown

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17266..17670
DNA (405bp) protein (135aa)

This feature has no annotations

PLM3_127_b2_sep16_scaffold_4551_20

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17737..18120
DNA (384bp) protein (128aa)
SmpA/OmlA domain protein (Fragment) Tax=mine drainage metagenome RepID=T1AHF2_9ZZZZ
SmpA/OmlA domain protein {ECO:0000313|EMBL:EQD40434.1}; Flags: Fragment;; species="unclassified sequences; metagenomes; ecological metagenomes.;" source="mine drainage metagenome.;"
omlA; Lipoprotein
PLM3_127_b2_sep16_scaffold_4551_21
Chromobacterium piscinae, Chromobacterium, Neisseriales, Betaproteobacteria, Proteobacteria, Bacteria

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comp(18142..18426)
DNA (285bp) protein (95aa)
Protein RnfH Tax=Marinobacter RepID=A1U619_MARAV
UPF0125 protein QR66_01520 {ECO:0000256|HAMAP-Rule:MF_00460}; species="Bacteria; Proteobacteria; Betaproteobacteria; Neisseriales; Chromobacteriaceae; Chromobacterium.;" source="Chromobacterium piscinae.;"
hypothetical protein
PLM3_127_b2_sep16_scaffold_4551_22
unknown

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comp(18413..18502)
DNA (90bp) protein (30aa)

This feature has no annotations

Displaying 22 items

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