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PLM3_127_b2_sep16_scaffold_4771

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Displaying 17 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
PLM3_127_b2_sep16_scaffold_4771_1
Verrucomicrobiae bacterium DG1235, Verrucomicrobiales, Verrucomicrobiae, Verrucomicrobia, Bacteria

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comp(144..860)
DNA (717bp) protein (239aa)
Response regulator receiver domain protein Tax=Verrucomicrobiae bacterium DG1235 RepID=B5JGA6_9BACT
Response regulator receiver domain protein {ECO:0000313|EMBL:EDY83134.1}; species="Bacteria; Verrucomicrobia; Verrucomicrobiae; Verrucomicrobiales.;" source="Verrucomicrobiae bacterium DG1235.;"
two component LuxR family transcriptional regulator
PLM3_127_b2_sep16_scaffold_4771_2
GWF2_Verrucomicrobia_62_7_curated, Verrucomicrobiae, Verrucomicrobia, Bacteria

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comp(943..3033)
DNA (2091bp) protein (697aa)
Sensor histidine kinase bin=GWC2_Geobacteraceae_55_20 species=Azoarcus sp. KH32C genus=Azoarcus taxon_order=Rhodocyclales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=GWC2_Geobacteraceae_55_20 organism_group=Deltaproteobacteria
PAS/PAC sensor signal transduction histidine kinase
Tax=GWF2_Verrucomicrobia_62_7_curated
PLM3_127_b2_sep16_scaffold_4771_trna_1
unknown

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comp(3238..3308)
DNA (71bp)
transferRNA Gly
PLM3_127_b2_sep16_scaffold_4771_3
unknown

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comp(3345..3653)
DNA (309bp) protein (103aa)

This feature has no annotations

PLM3_127_b2_sep16_scaffold_4771_4
Halorhodospira halochloris, Halorhodospira, Chromatiales, Gammaproteobacteria, Proteobacteria, Bacteria

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3779..4438
DNA (660bp) protein (220aa)
tRNA (guanine-N(7)-)-methyltransferase {ECO:0000256|HAMAP-Rule:MF_01057}; EC=2.1.1.33 {ECO:0000256|HAMAP-Rule:MF_01057};; tRNA (guanine(46)-N(7))-methyltransferase {ECO:0000256|HAMAP-Rule:MF_01057}; tRNA(m7G46)-methyltransferase {ECO:0000256|HAMAP-Rule:MF_01057}; species="Bacteria; Proteobacteria; Gammaproteobacteria; Chromatiales; Ectothiorhodospiraceae; Halorhodospira.;" source="Halorhodospira halochloris str. A.;"
tRNA (guanine-N(7)-)-methyltransferase Tax=Ectothiorhodospira sp. PHS-1 RepID=H1G6R7_9GAMM
tRNA (guanine-N7)-methyltransferase
PLM3_127_b2_sep16_scaffold_4771_5
Candidatus Contendobacter odensis, Candidatus Contendobacter, Gammaproteobacteria, Proteobacteria, Bacteria

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comp(4445..5068)
DNA (624bp) protein (208aa)
MarC family transcriptional regulator Tax=Thioalkalivibrio sp. ALJ17 RepID=UPI00035F3B6F
UPF0056 membrane protein {ECO:0000256|RuleBase:RU362048}; species="Bacteria; Proteobacteria; Gammaproteobacteria; Competibacteraceae; Candidatus Contendobacter.;" source="Candidatus Contendobacter odensis Run_B_J11.;"
MarC family membrane protein
PLM3_127_b2_sep16_scaffold_4771_6

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5155..5475
DNA (321bp) protein (107aa)
Uncharacterized protein Tax=mine drainage metagenome RepID=T1AUN7_9ZZZZ
Uncharacterized protein {ECO:0000313|EMBL:EQD45765.1}; species="unclassified sequences; metagenomes; ecological metagenomes.;" source="mine drainage metagenome.;"
hypothetical protein
PLM3_127_b2_sep16_scaffold_4771_7
unknown

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comp(5467..5565)
DNA (99bp) protein (33aa)

This feature has no annotations

PLM3_127_b2_sep16_scaffold_4771_8
Salinisphaera hydrothermalis, Salinisphaera, Salinisphaerales, Gammaproteobacteria, Proteobacteria, Bacteria

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comp(5562..6953)
DNA (1392bp) protein (464aa)
MFS transporter Tax=Methylomicrobium buryatense RepID=UPI0003466C90
Major facilitator superfamily protein {ECO:0000313|EMBL:KEZ77106.1}; species="Bacteria; Proteobacteria; Gammaproteobacteria; Salinisphaerales; Salinisphaeraceae; Salinisphaera.;" source="Salinisphaera hydrothermalis C41B8.;"
major facilitator superfamily protein
PLM3_127_b2_sep16_scaffold_4771_9
Thioalkalivibrio sulfidiphilus, Thioalkalivibrio, Chromatiales, Gammaproteobacteria, Proteobacteria, Bacteria

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comp(6950..7717)
DNA (768bp) protein (256aa)
exodeoxyribonuclease III Xth (EC:4.2.99.18)
Exodeoxyribonuclease III Xth {ECO:0000313|EMBL:ACL71212.1}; EC=4.2.99.18 {ECO:0000313|EMBL:ACL71212.1};; species="Bacteria; Proteobacteria; Gammaproteobacteria; Chromatiales; Ectothiorhodospiraceae; Thioalkalivibrio.;" source="Thioalkalivibrio sulfidiphilus (strain HL-EbGR7).;"
Exodeoxyribonuclease III Xth Tax=Thioalkalivibrio sp. (strain HL-EbGR7) RepID=B8GTF2_THISH
PLM3_127_b2_sep16_scaffold_4771_10
Neptuniibacter caesariensis, Neptuniibacter, Oceanospirillales, Gammaproteobacteria, Proteobacteria, Bacteria

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7742..8380
DNA (639bp) protein (213aa)
Orotate phosphoribosyltransferase {ECO:0000256|HAMAP-Rule:MF_01208, ECO:0000256|SAAS:SAAS00216328}; Short=OPRT {ECO:0000256|HAMAP-Rule:MF_01208};; Short=OPRTase {ECO:0000256|HAMAP-Rule:MF_01208};; EC=2.4.2.10 {ECO:0000256|HAMAP-Rule:MF_01208, ECO:0000256|SAAS:SAAS00216337};; species="Bacteria; Proteobacteria; Gammaproteobacteria; Oceanospirillales; Neptuniibacter.;" source="Neptuniibacter caesariensis.;"
Orotate phosphoribosyltransferase Tax=Neptuniibacter caesariensis RepID=Q2BKY5_NEPCE
pyrE; orotate phosphoribosyltransferase
PLM3_127_b2_sep16_scaffold_4771_11
Thioalkalivibrio sulfidiphilus, Thioalkalivibrio, Chromatiales, Gammaproteobacteria, Proteobacteria, Bacteria

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8489..9133
DNA (645bp) protein (215aa)
Uncharacterized protein Tax=Thioalkalivibrio sp. (strain HL-EbGR7) RepID=B8GTE8_THISH
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ACL71208.1}; Flags: Precursor;; species="Bacteria; Proteobacteria; Gammaproteobacteria; Chromatiales; Ectothiorhodospiraceae; Thioalkalivibrio.;" source="Thioalkalivibrio sulfidiphilus (strain HL-EbGR7).;"
PLM3_127_b2_sep16_scaffold_4771_12
Endozoicomonas elysicola, Endozoicomonas, Oceanospirillales, Gammaproteobacteria, Proteobacteria, Bacteria

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comp(9161..9649)
DNA (489bp) protein (163aa)
Deoxyuridine 5'-triphosphate nucleotidohydrolase {ECO:0000256|HAMAP-Rule:MF_00116, ECO:0000256|SAAS:SAAS00071038}; Short=dUTPase {ECO:0000256|HAMAP-Rule:MF_00116};; EC=3.6.1.23 {ECO:0000256|HAMAP-Rule:MF_00116, ECO:0000256|SAAS:SAAS00071036};; dUTP pyrophosphatase {ECO:0000256|HAMAP-Rule:MF_00116}; species="Bacteria; Proteobacteria; Gammaproteobacteria; Oceanospirillales; Hahellaceae; Endozoicomonas.;" source="Endozoicomonas elysicola.;"
dut; Deoxyuridine 5'-triphosphate nucleotidohydrolase (EC:3.6.1.23)
deoxyuridine 5''''-triphosphate nucleotidohydrolase Tax=Endozoicomonas elysicola RepID=UPI0003803BB6
PLM3_127_b2_sep16_scaffold_4771_13
Thiobacillus prosperus, Gammaproteobacteria, Proteobacteria, Bacteria

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comp(9642..10874)
DNA (1233bp) protein (411aa)
phosphopantothenoylcysteine decarboxylase Tax=Methylohalobius crimeensis RepID=UPI0003B77033
phosphopantothenoylcysteine decarboxylase
Bifunctional phosphopantothenoylcysteine decarboxylase/phosphopantothenate synthase {ECO:0000313|EMBL:KFZ90302.1}; species="Bacteria; Proteobacteria; Gammaproteobacteria.;" source="Thiobacillus prosperus.;"
PLM3_127_b2_sep16_scaffold_4771_14
Nitrosococcus halophilus, Nitrosococcus, Chromatiales, Gammaproteobacteria, Proteobacteria, Bacteria

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11022..11696
DNA (675bp) protein (225aa)
DNA repair protein RadC Tax=Nitrosococcus halophilus (strain Nc4) RepID=D5C3K7_NITHN
DNA repair protein RadC
DNA repair protein RadC {ECO:0000313|EMBL:ADE16914.1}; species="Bacteria; Proteobacteria; Gammaproteobacteria; Chromatiales; Chromatiaceae; Nitrosococcus.;" source="Nitrosococcus halophilus (strain Nc4).;"
PLM3_127_b2_sep16_scaffold_4771_15
Acidovorax sp. NO-1, Acidovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

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11816..13015
DNA (1200bp) protein (400aa)
Integrase family protein Tax=Acidovorax sp. NO-1 RepID=H0BTT9_9BURK
Integrase family protein {ECO:0000313|EMBL:EHL24217.1}; species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Acidovorax.;" source="Acidovorax sp. NO-1.;"
integrase family protein
PLM3_127_b2_sep16_scaffold_4771_16
Acidovorax sp. NO-1, Acidovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

13008..13577
DNA (570bp) protein (190aa)
Integrase family protein Tax=Acidovorax sp. NO-1 RepID=H0BTT8_9BURK
Integrase family protein {ECO:0000313|EMBL:EHL24216.1}; species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Acidovorax.;" source="Acidovorax sp. NO-1.;"
integrase family protein
Displaying 17 items

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