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PLM3_127_b2_sep16_scaffold_4964

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Displaying 19 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
PLM3_127_b2_sep16_scaffold_4964_1
BJP_IG2103_Dechloromonas_63_51, Dechloromonas, Rhodocyclales, Betaproteobacteria, Proteobacteria, Bacteria

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comp(78..863)
DNA (786bp) protein (262aa)
hypothetical protein Tax=Arhodomonas aquaeolei RepID=UPI0003746663
ABC-type cobalamin/Fe3+-siderophore transport system, ATPase component
Tax=BJP_IG2103_Dechloromonas_63_51
PLM3_127_b2_sep16_scaffold_4964_2
RBG_16_Betaproteobacteria_64_18_curated, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(873..1649)
DNA (777bp) protein (259aa)
hypothetical protein Tax=Marinobacterium rhizophilum RepID=UPI0003656F58
hypothetical protein
Tax=RBG_16_Betaproteobacteria_64_18_curated
PLM3_127_b2_sep16_scaffold_4964_3

Not on your lists

comp(1656..1847)
DNA (192bp) protein (64aa)
Uncharacterized protein Tax=Hydrocarboniphaga effusa AP103 RepID=I7ZI30_9GAMM
Uncharacterized protein {ECO:0000313|EMBL:KKO12762.1}; species="unclassified sequences; metagenomes; ecological metagenomes.;" source="marine sediment metagenome.;"
hypothetical protein
PLM3_127_b2_sep16_scaffold_4964_4
uncultured gamma proteobacterium HF0770_27E13, Gammaproteobacteria, Proteobacteria, Bacteria

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comp(1844..2542)
DNA (699bp) protein (233aa)
Pyridoxine/pyridoxamine 5'-phosphate oxidase {ECO:0000256|HAMAP-Rule:MF_01629}; EC=1.4.3.5 {ECO:0000256|HAMAP-Rule:MF_01629};; PNP/PMP oxidase {ECO:0000256|HAMAP-Rule:MF_01629}; Pyridoxal 5'-phosphate synthase {ECO:0000256|HAMAP-Rule:MF_01629}; species="Bacteria; Proteobacteria; Gammaproteobacteria; environmental samples.;" source="uncultured gamma proteobacterium HF0770_27E13.;"
pdxH; pyridoxamine 5'-phosphate oxidase (EC:1.4.3.5)
Pyridoxine/pyridoxamine 5'-phosphate oxidase Tax=uncultured gamma proteobacterium HF0770_27E13 RepID=E0XYQ9_9GAMM
PLM3_127_b2_sep16_scaffold_4964_5
Pseudomonas parafulva, Pseudomonas, Pseudomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

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2625..3428
DNA (804bp) protein (268aa)
Alpha/beta hydrolase family protein Tax=Pseudomonas chlororaphis O6 RepID=I4XS79_9PSED
3-oxoadipate enol-lactonase
3-oxoadipate enol-lactonase {ECO:0000313|EMBL:AIZ32090.1}; species="Bacteria; Proteobacteria; Gammaproteobacteria; Pseudomonadales; Pseudomonadaceae; Pseudomonas.;" source="Pseudomonas parafulva.;"
PLM3_127_b2_sep16_scaffold_4964_6
unknown

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3498..3878
DNA (381bp) protein (127aa)

This feature has no annotations

PLM3_127_b2_sep16_scaffold_4964_7
RBG_16_RIF_WS3X_71_46_curated, RIF-WS3X, Bacteria

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3991..5097
DNA (1107bp) protein (369aa)
chorismate mutase (EC:1.3.1.12)
Chorismate mutase Tax=Haliangium ochraceum (strain DSM 14365 / JCM 11303 / SMP-2) RepID=D0LRS3_HALO1 bin=16ft_combo_ws3_JS1 species=Haliangium ochraceum genus=Haliangium taxon_order=Myxococcales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=16ft_combo_ws3_JS1 organism_group=Unknown_CP organism_desc=Cant place firmly withiin either WS3 or JS1. Part of a large Rifle clade
Tax=RBG_16_RIF_WS3X_71_46_curated
PLM3_127_b2_sep16_scaffold_4964_8
Sedimenticola sp. SIP-G1, Sedimenticola, Gammaproteobacteria, Proteobacteria, Bacteria

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5120..5794
DNA (675bp) protein (225aa)
Diguanylate cyclase YddV Tax=endosymbiont of Tevnia jerichonana (vent Tica) RepID=G2FG30_9GAMM
Uncharacterized protein {ECO:0000313|EMBL:AKH20874.1}; species="Bacteria; Proteobacteria; Gammaproteobacteria; Sedimenticola.;" source="Sedimenticola sp. SIP-G1.;"
hypothetical protein
PLM3_127_b2_sep16_scaffold_4964_9
endosymbiont of Tevnia jerichonana, Gammaproteobacteria, Proteobacteria, Bacteria

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5791..6228
DNA (438bp) protein (146aa)
Diguanylate cyclase YddV {ECO:0000313|EMBL:EGW54263.1}; EC=2.7.7.65 {ECO:0000313|EMBL:EGW54263.1};; species="Bacteria; Proteobacteria; Gammaproteobacteria; sulfur-oxidizing symbionts.;" source="endosymbiont of Tevnia jerichonana (vent Tica).;"
hypothetical protein Tax=Massilia niastensis RepID=UPI00036640CB
GGDEF domain protein
PLM3_127_b2_sep16_scaffold_4964_10
Halomonas hydrothermalis, Halomonas, Oceanospirillales, Gammaproteobacteria, Proteobacteria, Bacteria

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comp(6210..7193)
DNA (984bp) protein (328aa)
Transport system permease protein Tax=Halomonas sp. HAL1 RepID=G4F3T2_9GAMM
ABC transporter permease {ECO:0000313|EMBL:KHJ51018.1}; species="Bacteria; Proteobacteria; Gammaproteobacteria; Oceanospirillales; Halomonadaceae; Halomonas.;" source="Halomonas hydrothermalis.;"
ABC-type transporter, integral membrane subunit
PLM3_127_b2_sep16_scaffold_4964_11
endosymbiont of Riftia pachyptila, Gammaproteobacteria, Proteobacteria, Bacteria

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7318..7875
DNA (558bp) protein (186aa)
RNA pyrophosphohydrolase {ECO:0000256|HAMAP-Rule:MF_00298, ECO:0000256|SAAS:SAAS00016246}; EC=3.6.1.- {ECO:0000256|HAMAP-Rule:MF_00298, ECO:0000256|SAAS:SAAS00016219};; (Di)nucleoside polyphosphate hydrolase {ECO:0000256|HAMAP-Rule:MF_00298}; species="Bacteria; Proteobacteria; Gammaproteobacteria; sulfur-oxidizing symbionts.;" source="endosymbiont of Riftia pachyptila (vent Ph05).;"
RNA pyrophosphohydrolase Tax=endosymbiont of Tevnia jerichonana (vent Tica) RepID=G2FJH7_9GAMM
dinucleoside polyphosphate hydrolase
PLM3_127_b2_sep16_scaffold_4964_12
BJP_IG2102_Gammaproteobacteria_62_140, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

7970..8695
DNA (726bp) protein (242aa)
Uncharacterized protein Tax=Hydrocarboniphaga effusa AP103 RepID=I7ZJQ2_9GAMM
hypothetical protein
Tax=BJP_IG2102_Gammaproteobacteria_62_140
PLM3_127_b2_sep16_scaffold_4964_13
RBG_16_Gammaproteobacteria_51_14_curated, Gammaproteobacteria, Proteobacteria, Bacteria

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8724..9140
DNA (417bp) protein (139aa)
Uncharacterized protein Tax=Xanthomonas albilineans (strain GPE PC73 / CFBP 7063) RepID=D2UBA8_XANAP
hypothetical protein
Tax=RBG_16_Gammaproteobacteria_51_14_curated
PLM3_127_b2_sep16_scaffold_4964_14
Beggiatoa sp. PS, Beggiatoa, Thiotrichales, Gammaproteobacteria, Proteobacteria, Bacteria

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9215..9580
DNA (366bp) protein (122aa)
Iron-sulfur cluster insertion protein ErpA Tax=Beggiatoa sp. PS RepID=A7BQ73_9GAMM
iron-sulfur cluster insertion protein ErpA
Iron-sulfur cluster insertion protein ErpA {ECO:0000256|HAMAP-Rule:MF_01380}; species="Bacteria; Proteobacteria; Gammaproteobacteria; Thiotrichales; Thiotrichaceae; Beggiatoa.;" source="Beggiatoa sp. PS.;"
PLM3_127_b2_sep16_scaffold_4964_15
BJP_IG2102_Gammaproteobacteria_62_140, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

9653..11101
DNA (1449bp) protein (483aa)
phosphatase GppA Tax=Methylococcus capsulatus RepID=UPI0002E3BEB8
Ppx/GppA phosphatase
Tax=BJP_IG2102_Gammaproteobacteria_62_140
PLM3_127_b2_sep16_scaffold_4964_16
BJP_IG2102_Gammaproteobacteria_62_140, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(11091..13169)
DNA (2079bp) protein (693aa)
polyphosphate kinase (EC:2.7.4.1)
hypothetical protein Tax=Arhodomonas aquaeolei RepID=UPI000373D36E
Tax=BJP_IG2102_Gammaproteobacteria_62_140
PLM3_127_b2_sep16_scaffold_4964_17
Xylella fastidiosa, Xylella, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(13215..14336)
DNA (1122bp) protein (374aa)
Anhydro-N-acetylmuramic acid kinase {ECO:0000256|HAMAP-Rule:MF_01270, ECO:0000256|SAAS:SAAS00085893}; EC=2.7.1.170 {ECO:0000256|HAMAP-Rule:MF_01270, ECO:0000256|SAAS:SAAS00085888};; AnhMurNAc kinase {ECO:0000256|HAMAP-Rule:MF_01270}; species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Xylella.;" source="Xylella fastidiosa 32.;"
Anhydro-N-acetylmuramic acid kinase Tax=Xylella fastidiosa RepID=ANMK_XYLFA
anmK; anhydro-N-acetylmuramic acid kinase
PLM3_127_b2_sep16_scaffold_4964_18
RBG_16_Gamma2_60_9_curated, Gammaproteobacteria, Proteobacteria, Bacteria

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comp(14361..15734)
DNA (1374bp) protein (458aa)
hypothetical protein Tax=Thioalkalivibrio sp. ALJ17 RepID=UPI00037C09DD
peptidase M23
Tax=RBG_16_Gamma2_60_9_curated
PLM3_127_b2_sep16_scaffold_4964_19
Sedimenticola sp. SIP-G1, Sedimenticola, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

15982..17193
DNA (1212bp) protein (404aa)
Tyrosine--tRNA ligase {ECO:0000313|EMBL:AKH21397.1}; EC=6.1.1.1 {ECO:0000313|EMBL:AKH21397.1};; species="Bacteria; Proteobacteria; Gammaproteobacteria; Sedimenticola.;" source="Sedimenticola sp. SIP-G1.;"
Tyrosine--tRNA ligase Tax=Thioflavicoccus mobilis 8321 RepID=L0GX10_9GAMM
tyrosyl-tRNA synthetase
Displaying 19 items

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