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PLM3_127_b2_sep16_scaffold_1219

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Displaying items 1-30 of 31 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
PLM3_127_b2_sep16_scaffold_1219_1
RBG_16_Gammaproteobacteria_57_12_curated, Gammaproteobacteria, Proteobacteria, Bacteria

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1..1284
DNA (1284bp) protein (428aa)
polyribonucleotide nucleotidyltransferase (EC:2.7.7.8)
NADH-quinone oxidoreductase subunit N Tax=endosymbiont of Riftia pachyptila (vent Ph05) RepID=G2DFV1_9GAMM
Tax=RBG_16_Gammaproteobacteria_57_12_curated
PLM3_127_b2_sep16_scaffold_1219_2
Candidatus Contendobacter odensis, Candidatus Contendobacter, Gammaproteobacteria, Proteobacteria, Bacteria

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comp(1614..2144)
DNA (531bp) protein (177aa)
hypothetical protein Tax=Arhodomonas aquaeolei RepID=UPI000380E723
Putative polyhydroxyalkanoate synthesis repressor PhaR {ECO:0000313|EMBL:CDH47612.1}; species="Bacteria; Proteobacteria; Gammaproteobacteria; Competibacteraceae; Candidatus Contendobacter.;" source="Candidatus Contendobacter odensis Run_B_J11.;"
polyhydroxyalkonate synthesis repressor PhaR
PLM3_127_b2_sep16_scaffold_1219_3
Candidatus Accumulibacter phosphatis, Candidatus Accumulibacter, Betaproteobacteria, Proteobacteria, Bacteria

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comp(2274..3221)
DNA (948bp) protein (316aa)
glutamate--tRNA ligase (EC:6.1.1.17)
Glutamyl-Q tRNA(Asp) synthetase {ECO:0000256|HAMAP-Rule:MF_01428, ECO:0000256|SAAS:SAAS00018238}; Short=Glu-Q-RSs {ECO:0000256|HAMAP-Rule:MF_01428};; EC=6.1.1.- {ECO:0000256|HAMAP-Rule:MF_01428, ECO:0000256|SAAS:SAAS00018222};; species="Bacteria; Proteobacteria; Betaproteobacteria; Candidatus Accumulibacter.;" source="Accumulibacter phosphatis (strain UW-1).;"
Glutamyl-Q tRNA(Asp) synthetase Tax=Accumulibacter phosphatis (strain UW-1) RepID=C7RK62_ACCPU
PLM3_127_b2_sep16_scaffold_1219_4

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comp(3181..3939)
DNA (759bp) protein (253aa)
RNA polymerase-binding, DksA (Fragment) Tax=mine drainage metagenome RepID=T0XTP9_9ZZZZ
RNA polymerase-binding, DksA {ECO:0000313|EMBL:EQD26166.1}; Flags: Fragment;; species="unclassified sequences; metagenomes; ecological metagenomes.;" source="mine drainage metagenome.;"
dksA; DnaK suppressor protein
PLM3_127_b2_sep16_scaffold_1219_5
Thiorhodococcus sp. AK35, Thiorhodococcus, Chromatiales, Gammaproteobacteria, Proteobacteria, Bacteria

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comp(4439..4843)
DNA (405bp) protein (135aa)
NADPH-dependent 7-cyano-7-deazaguanine reductase {ECO:0000256|HAMAP-Rule:MF_00818, ECO:0000256|SAAS:SAAS00184002}; EC=1.7.1.13 {ECO:0000256|HAMAP-Rule:MF_00818, ECO:0000256|SAAS:SAAS00001352};; 7-cyano-7-carbaguanine reductase {ECO:0000256|HAMAP-Rule:MF_00818}; NADPH-dependent nitrile oxidoreductase {ECO:0000256|HAMAP-Rule:MF_00818}; PreQ(0) reductase {ECO:0000256|HAMAP-Rule:MF_00818}; species="Bacteria; Proteobacteria; Gammaproteobacteria; Chromatiales; Chromatiaceae; Thiorhodococcus.;" source="Thiorhodococcus sp. AK35.;"
7-cyano-7-deazaguanine reductase (EC:1.7.1.13)
7-cyano-7-deazaguanine reductase Tax=Lamprocystis purpurea RepID=UPI0003717E80
PLM3_127_b2_sep16_scaffold_1219_6
Thioalkalivibrio sulfidiphilus, Thioalkalivibrio, Chromatiales, Gammaproteobacteria, Proteobacteria, Bacteria

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4935..8438
DNA (3504bp) protein (1168aa)
Chromosome partition protein Smc Tax=Thioalkalivibrio sp. (strain HL-EbGR7) RepID=B8GTL2_THISH
Chromosome partition protein Smc {ECO:0000256|HAMAP-Rule:MF_01894}; species="Bacteria; Proteobacteria; Gammaproteobacteria; Chromatiales; Ectothiorhodospiraceae; Thioalkalivibrio.;" source="Thioalkalivibrio sulfidiphilus (strain HL-EbGR7).;"
chromosome segregation protein SMC
PLM3_127_b2_sep16_scaffold_1219_7
Nitrosococcus halophilus, Nitrosococcus, Chromatiales, Gammaproteobacteria, Proteobacteria, Bacteria

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8467..9309
DNA (843bp) protein (281aa)
Cell division protein ZipA Tax=Nitrosococcus halophilus (strain Nc4) RepID=D5C142_NITHN
cell division protein ZipA
Cell division protein ZipA {ECO:0000256|RuleBase:RU003612}; species="Bacteria; Proteobacteria; Gammaproteobacteria; Chromatiales; Chromatiaceae; Nitrosococcus.;" source="Nitrosococcus halophilus (strain Nc4).;"
PLM3_127_b2_sep16_scaffold_1219_8
RBG_16_Gammaproteobacteria_57_12_curated, Gammaproteobacteria, Proteobacteria, Bacteria

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9317..11350
DNA (2034bp) protein (678aa)
DNA ligase (NAD(+)) (EC:6.5.1.2)
NAD-dependent DNA ligase LigA Tax=Thioalkalivibrio sp. ALJ17 RepID=UPI00035E390E
Tax=RBG_16_Gammaproteobacteria_57_12_curated
PLM3_127_b2_sep16_scaffold_1219_9
RBG_16_Gamma2_64_11_curated, Gammaproteobacteria, Proteobacteria, Bacteria

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comp(11464..12288)
DNA (825bp) protein (275aa)
hypothetical protein Tax=Methylobacter marinus RepID=UPI00035CE298
PpiC-type peptidyl-prolyl cis-trans isomerase
Tax=RBG_16_Gamma2_64_11_curated
PLM3_127_b2_sep16_scaffold_1219_10
BJP_IG2103_SUB10_Xanthomonadales_61_45, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

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comp(12285..12602)
DNA (318bp) protein (106aa)
hypothetical protein Tax=Bordetella sp. FB-8 RepID=UPI000364179F
Cell division protein BolA
Tax=BJP_IG2103_SUB10_Xanthomonadales_61_45
PLM3_127_b2_sep16_scaffold_1219_11
Sedimenticola sp. SIP-G1, Sedimenticola, Gammaproteobacteria, Proteobacteria, Bacteria

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comp(12634..13218)
DNA (585bp) protein (195aa)
Probable intracellular septation protein A Tax=Halothiobacillus neapolitanus (strain ATCC 23641 / c2) RepID=D0L0R7_HALNC
Septation protein A {ECO:0000313|EMBL:AKH19822.1}; species="Bacteria; Proteobacteria; Gammaproteobacteria; Sedimenticola.;" source="Sedimenticola sp. SIP-G1.;"
intracellular septation protein A
PLM3_127_b2_sep16_scaffold_1219_12
R_Betaproteobacteria_64_14, Betaproteobacteria, Proteobacteria, Bacteria

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13272..13424
DNA (153bp) protein (51aa)
Putative uncharacterized protein Tax=Neisseria weaveri ATCC 51223 RepID=G2DQK5_9NEIS
hypothetical protein
Tax=RIFCSPLOWO2_02_Betaproteobacteria_64_14_curated
PLM3_127_b2_sep16_scaffold_1219_13
RIFCSPLOWO2_12_FULL_Betaproteobacteria_62_13_curated, Betaproteobacteria, Proteobacteria, Bacteria

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13421..13981
DNA (561bp) protein (187aa)
Sua5/YciO/YrdC/YwlC family protein Tax=Nitrosomonas sp. AL212 RepID=F9ZJK8_9PROT
Sua5/YciO/YrdC/YwlC family protein
Tax=RIFCSPLOWO2_12_FULL_Betaproteobacteria_62_13_curated
PLM3_127_b2_sep16_scaffold_1219_14
Hydrogenovibrio marinus, Hydrogenovibrio, Thiotrichales, Gammaproteobacteria, Proteobacteria, Bacteria

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14079..14744
DNA (666bp) protein (222aa)
hypothetical protein Tax=Thiothrix flexilis RepID=UPI00036A339A
Peptidase {ECO:0000313|EMBL:KDN95165.1}; species="Bacteria; Proteobacteria; Gammaproteobacteria; Thiotrichales; Piscirickettsiaceae; Hydrogenovibrio.;" source="Hydrogenovibrio marinus.;"
peptidase M50
PLM3_127_b2_sep16_scaffold_1219_15
Marinobacter lipolyticus, Marinobacter, Alteromonadales, Gammaproteobacteria, Proteobacteria, Bacteria

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14754..15968
DNA (1215bp) protein (405aa)
Tryptophan--tRNA ligase {ECO:0000256|HAMAP-Rule:MF_00140, ECO:0000256|SAAS:SAAS00009965}; EC=6.1.1.2 {ECO:0000256|HAMAP-Rule:MF_00140, ECO:0000256|SAAS:SAAS00009965};; Tryptophanyl-tRNA synthetase {ECO:0000256|HAMAP-Rule:MF_00140}; species="Bacteria; Proteobacteria; Gammaproteobacteria; Alteromonadales; Alteromonadaceae; Marinobacter.;" source="Marinobacter lipolyticus SM19.;"
tryptophanyl-tRNA synthetase (EC:6.1.1.2)
Tryptophan--tRNA ligase Tax=Marinobacter lipolyticus SM19 RepID=R8B1E6_9ALTE
PLM3_127_b2_sep16_scaffold_1219_16
BJP_IG2102_Gammaproteobacteria_62_140, Gammaproteobacteria, Proteobacteria, Bacteria

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16054..16872
DNA (819bp) protein (273aa)
Segregation and condensation protein A Tax=gamma proteobacterium IMCC3088 RepID=F3KZZ6_9GAMM
chromosome segregation and condensation protein ScpA
Tax=BJP_IG2102_Gammaproteobacteria_62_140
PLM3_127_b2_sep16_scaffold_1219_17
Sedimenticola sp. SIP-G1, Sedimenticola, Gammaproteobacteria, Proteobacteria, Bacteria

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16919..17629
DNA (711bp) protein (237aa)
Segregation and condensation protein B Tax=endosymbiont of unidentified scaly snail isolate Monju RepID=S6BSZ1_9GAMM
Uncharacterized protein {ECO:0000313|EMBL:AKH22059.1}; species="Bacteria; Proteobacteria; Gammaproteobacteria; Sedimenticola.;" source="Sedimenticola sp. SIP-G1.;"
segregation and condensation protein B
PLM3_127_b2_sep16_scaffold_1219_18
RBG_16_Gammaproteobacteria_62_13__curated, Gammaproteobacteria, Proteobacteria, Bacteria

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17661..18527
DNA (867bp) protein (289aa)
Pseudouridine synthase Tax=Nitrosococcus halophilus (strain Nc4) RepID=D5C207_NITHN
RNA-binding S4 domain-containing protein
Tax=RBG_16_Gammaproteobacteria_62_13__curated
PLM3_127_b2_sep16_scaffold_1219_19
Alishewanella aestuarii, Alishewanella, Alteromonadales, Gammaproteobacteria, Proteobacteria, Bacteria

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comp(18499..19272)
DNA (774bp) protein (258aa)
Putative oxoacyl-(Acyl carrier protein) reductase Tax=Alishewanella aestuarii B11 RepID=J1PZA3_9ALTE
Putative oxoacyl-(Acyl carrier protein) reductase {ECO:0000313|EMBL:EJI84063.1}; species="Bacteria; Proteobacteria; Gammaproteobacteria; Alteromonadales; Alteromonadaceae; Alishewanella.;" source="Alishewanella aestuarii B11.;"
short-chain dehydrogenase
PLM3_127_b2_sep16_scaffold_1219_20
RBG_16_Gamma2_65_34_curated, Gammaproteobacteria, Proteobacteria, Bacteria

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comp(19279..20574)
DNA (1296bp) protein (432aa)
Uncharacterized protein Tax=Thioalkalivibrio sp. (strain HL-EbGR7) RepID=B8GRQ8_THISH
hypothetical protein
Tax=RBG_16_Gamma2_65_34_curated
PLM3_127_b2_sep16_scaffold_1219_21
RBG_16_Gammaproteobacteria_57_12_curated, Gammaproteobacteria, Proteobacteria, Bacteria

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comp(20571..21263)
DNA (693bp) protein (231aa)
phosphoglycolate phosphatase Tax=Thioalkalivibrio sp. ALJ17 RepID=UPI0003657FE3
2-phosphoglycolate phosphatase
Tax=RBG_16_Gammaproteobacteria_57_12_curated
PLM3_127_b2_sep16_scaffold_1219_22
Ralstonia pickettii, Ralstonia, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

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comp(21265..22092)
DNA (828bp) protein (276aa)
3-demethylubiquinone-9 3-methyltransferase (EC:2.1.1.64)
Ubiquinone biosynthesis O-methyltransferase Tax=Ralstonia pickettii (strain 12J) RepID=B2U877_RALPJ
Ubiquinone biosynthesis O-methyltransferase {ECO:0000256|HAMAP-Rule:MF_00472, ECO:0000256|SAAS:SAAS00063564}; 2-polyprenyl-6-hydroxyphenol methylase {ECO:0000256|HAMAP-Rule:MF_00472}; 3-demethylubiquinone 3-O-methyltransferase {ECO:0000256|HAMAP-Rule:MF_00472}; species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Burkholderiaceae; Ralstonia.;" source="Ralstonia pickettii (strain 12J).;"
PLM3_127_b2_sep16_scaffold_1219_23
Thiobacillus prosperus, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists


22213..24807
DNA (2595bp) protein (865aa)
DNA gyrase subunit A {ECO:0000256|HAMAP-Rule:MF_01897}; EC=5.99.1.3 {ECO:0000256|HAMAP-Rule:MF_01897};; species="Bacteria; Proteobacteria; Gammaproteobacteria.;" source="Thiobacillus prosperus.;"
DNA gyrase subunit A (EC:5.99.1.3)
DNA gyrase subunit A Tax=Thioalkalivibrio sp. ALJ17 RepID=UPI000365B6E4
PLM3_127_b2_sep16_scaffold_1219_24
Alkalilimnicola ehrlichii, Alkalilimnicola, Chromatiales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

24895..25974
DNA (1080bp) protein (360aa)
phosphoserine aminotransferase (EC:2.6.1.52)
Phosphoserine aminotransferase {ECO:0000256|HAMAP-Rule:MF_00160, ECO:0000256|RuleBase:RU004505}; EC=2.6.1.52 {ECO:0000256|HAMAP-Rule:MF_00160, ECO:0000256|RuleBase:RU004505};; Phosphohydroxythreonine aminotransferase {ECO:0000256|HAMAP-Rule:MF_00160}; species="Bacteria; Proteobacteria; Gammaproteobacteria; Chromatiales; Ectothiorhodospiraceae; Alkalilimnicola.;" source="Alkalilimnicola ehrlichii (strain ATCC BAA-1101 / DSM 17681 / MLHE-1).;"
MFS transporter Tax=Arhodomonas aquaeolei RepID=UPI00036F77FF
PLM3_127_b2_sep16_scaffold_1219_25
Allochromatium vinosum, Allochromatium, Chromatiales, Gammaproteobacteria, Proteobacteria, Bacteria

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25995..27164
DNA (1170bp) protein (390aa)
D-isomer specific 2-hydroxyacid dehydrogenase NAD-binding protein Tax=Allochromatium vinosum (strain ATCC 17899 / DSM 180 / NBRC 103801 / D) RepID=D3RV75_ALLVD
NAD-binding D-isomer specific 2-hydroxyacid dehydrogenase protein
D-isomer specific 2-hydroxyacid dehydrogenase NAD-binding protein {ECO:0000313|EMBL:ADC63007.1}; species="Bacteria; Proteobacteria; Gammaproteobacteria; Chromatiales; Chromatiaceae; Allochromatium.;" source="Allochromatium vinosum (strain ATCC 17899 / DSM 180 / NBRC 103801 /; NCIMB 10441 / D) (Chromatium vinosum).;"
PLM3_127_b2_sep16_scaffold_1219_26
BJP_IG2102_Gammaproteobacteria_62_140, Gammaproteobacteria, Proteobacteria, Bacteria

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27172..28284
DNA (1113bp) protein (371aa)
prephenate dehydratase Tax=Thioalkalivibrio sp. ALJ17 RepID=UPI00037E9706
chorismate mutase
Tax=BJP_IG2102_Gammaproteobacteria_62_140
PLM3_127_b2_sep16_scaffold_1219_27
Allochromatium vinosum, Allochromatium, Chromatiales, Gammaproteobacteria, Proteobacteria, Bacteria

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28300..29424
DNA (1125bp) protein (375aa)
Histidinol-phosphate aminotransferase {ECO:0000256|HAMAP-Rule:MF_01023}; EC=2.6.1.9 {ECO:0000256|HAMAP-Rule:MF_01023};; Imidazole acetol-phosphate transaminase {ECO:0000256|HAMAP-Rule:MF_01023}; Flags: Precursor;; species="Bacteria; Proteobacteria; Gammaproteobacteria; Chromatiales; Chromatiaceae; Allochromatium.;" source="Allochromatium vinosum (strain ATCC 17899 / DSM 180 / NBRC 103801 /; NCIMB 10441 / D) (Chromatium vinosum).;"
Histidinol-phosphate aminotransferase Tax=Allochromatium vinosum (strain ATCC 17899 / DSM 180 / NBRC 103801 / D) RepID=D3RV73_ALLVD
histidinol-phosphate aminotransferase
PLM3_127_b2_sep16_scaffold_1219_28
Alkalilimnicola ehrlichii, Alkalilimnicola, Chromatiales, Gammaproteobacteria, Proteobacteria, Bacteria

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29427..30776
DNA (1350bp) protein (450aa)
3-phosphoshikimate 1-carboxyvinyltransferase (EC:2.5.1.19)
3-phosphoshikimate 1-carboxyvinyltransferase {ECO:0000255|HAMAP-Rule:MF_00210}; EC=2.5.1.19 {ECO:0000255|HAMAP-Rule:MF_00210};; 5-enolpyruvylshikimate-3-phosphate synthase {ECO:0000255|HAMAP-Rule:MF_00210}; Short=EPSP synthase {ECO:0000255|HAMAP-Rule:MF_00210};; Short=EPSPS {ECO:0000255|HAMAP-Rule:MF_00210};; species="Bacteria; Proteobacteria; Gammaproteobacteria; Chromatiales; Ectothiorhodospiraceae; Alkalilimnicola.;" source="Alkalilimnicola ehrlichii (strain ATCC BAA-1101 / DSM 17681 / MLHE-1).;"
3-phosphoshikimate 1-carboxyvinyltransferase Tax=Alkalilimnicola ehrlichii (strain ATCC BAA-1101 / DSM 17681 / MLHE-1) RepID=AROA_ALKEH
PLM3_127_b2_sep16_scaffold_1219_29
Thioalkalivibrio sulfidiphilus, Thioalkalivibrio, Chromatiales, Gammaproteobacteria, Proteobacteria, Bacteria

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30778..31458
DNA (681bp) protein (227aa)
cytidylate kinase (EC:2.7.4.14)
Cytidylate kinase {ECO:0000256|HAMAP-Rule:MF_00238}; Short=CK {ECO:0000256|HAMAP-Rule:MF_00238};; EC=2.7.4.25 {ECO:0000256|HAMAP-Rule:MF_00238};; Cytidine monophosphate kinase {ECO:0000256|HAMAP-Rule:MF_00238}; species="Bacteria; Proteobacteria; Gammaproteobacteria; Chromatiales; Ectothiorhodospiraceae; Thioalkalivibrio.;" source="Thioalkalivibrio sulfidiphilus (strain HL-EbGR7).;"
Cytidylate kinase Tax=Thioalkalivibrio sp. (strain HL-EbGR7) RepID=B8GRS2_THISH
PLM3_127_b2_sep16_scaffold_1219_30
Halorhodospira halochloris, Halorhodospira, Chromatiales, Gammaproteobacteria, Proteobacteria, Bacteria

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32641..33216
DNA (576bp) protein (192aa)
30S ribosomal protein S1 Tax=Ectothiorhodospira sp. PHS-1 RepID=H1G4D4_9GAMM
rpsA; 30S ribosomal protein S1
30S ribosomal protein S1 {ECO:0000313|EMBL:AHK79162.1}; species="Bacteria; Proteobacteria; Gammaproteobacteria; Chromatiales; Ectothiorhodospiraceae; Halorhodospira.;" source="Halorhodospira halochloris str. A.;"
Displaying items 1-30 of 31 in total

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