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PLM3_127_b2_sep16_scaffold_1433

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Displaying 22 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
PLM3_127_b2_sep16_scaffold_1433_1
RIFCSPLOWO2_12_FULL_Acidobacteria_65_11_curated, Acidobacteria, Bacteria

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1..672
DNA (672bp) protein (224aa)
serine/threonine protein kinase bin=RBG_19FT_COMBO_Aminicenantes_65_30 tax=RBG_19FT_COMBO_Aminicenantes_65_30 organism_group=OP8 (Aminicenantes) organism_desc=Curation Candidate
serine/threonine protein kinase
Tax=RIFCSPLOWO2_12_FULL_Acidobacteria_65_11_curated
PLM3_127_b2_sep16_scaffold_1433_2
RBG_16_Gamma2_64_11_curated, Gammaproteobacteria, Proteobacteria, Bacteria

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comp(747..1667)
DNA (921bp) protein (307aa)
Fructosamine-3-kinase Tax=Thiorhodovibrio sp. 970 RepID=H8YZ45_9GAMM
fructosamine-3-kinase
Tax=RBG_16_Gamma2_64_11_curated
PLM3_127_b2_sep16_scaffold_1433_3
RBG_16_Gamma2_64_11_curated, Gammaproteobacteria, Proteobacteria, Bacteria

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comp(1915..2589)
DNA (675bp) protein (225aa)
HNH endonuclease domain protein Tax=Methylococcus capsulatus (strain ATCC 33009 / NCIMB 11132 / Bath) RepID=Q604E9_METCA
HNH endonuclease domain-containing protein
Tax=RBG_16_Gamma2_64_11_curated
PLM3_127_b2_sep16_scaffold_1433_4
Thiorhodospira sibirica, Thiorhodospira, Chromatiales, Gammaproteobacteria, Proteobacteria, Bacteria

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2748..3869
DNA (1122bp) protein (374aa)
NAD(P)(+) transhydrogenase (AB-specific) {ECO:0000313|EMBL:EGZ50729.1}; EC=1.6.1.2 {ECO:0000313|EMBL:EGZ50729.1};; species="Bacteria; Proteobacteria; Gammaproteobacteria; Chromatiales; Ectothiorhodospiraceae; Thiorhodospira.;" source="Thiorhodospira sibirica ATCC 700588.;"
NAD(P)(+) transhydrogenase (EC:1.6.1.2)
NAD(P) transhydrogenase subunit alpha Tax=Thioalkalivibrio thiocyanodenitrificans RepID=UPI00035CDEBF
PLM3_127_b2_sep16_scaffold_1433_5
Oleiagrimonas soli, Oleiagrimonas, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

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3866..4159
DNA (294bp) protein (98aa)
NAD(P) transhydrogenase Tax=Dyella ginsengisoli RepID=UPI0003471C28
NAD(P) transhydrogenase {ECO:0000313|EMBL:KGI77200.1}; species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Oleiagrimonas.;" source="Oleiagrimonas soli.;"
NAD(P) transhydrogenase
PLM3_127_b2_sep16_scaffold_1433_6
Thioploca ingrica, Thioploca, Thiotrichales, Gammaproteobacteria, Proteobacteria, Bacteria

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4156..5559
DNA (1404bp) protein (468aa)
NAD(P) transhydrogenase subunit beta {ECO:0000256|PIRNR:PIRNR000204}; EC=1.6.1.2 {ECO:0000256|PIRNR:PIRNR000204};; Nicotinamide nucleotide transhydrogenase subunit beta {ECO:0000256|PIRNR:PIRNR000204}; species="Bacteria; Proteobacteria; Gammaproteobacteria; Thiotrichales; Thiotrichaceae; Thioploca.;" source="Thioploca ingrica.;"
NADP transhydrogenase subunit alpha Tax=Thioalkalivibrio sp. ALJ17 RepID=UPI0003791B20
NADP transhydrogenase subunit alpha
PLM3_127_b2_sep16_scaffold_1433_7
Lysobacter capsici, Lysobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

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5572..6045
DNA (474bp) protein (158aa)
Endoribonuclease L-PSP Tax=Cupriavidus basilensis OR16 RepID=H1S479_9BURK
Endoribonuclease L-PSP {ECO:0000313|EMBL:EYR68875.1}; species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Lysobacter.;" source="Lysobacter capsici AZ78.;"
Endoribonuclease L-PSP
PLM3_127_b2_sep16_scaffold_1433_8

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6187..6456
DNA (270bp) protein (90aa)
hypothetical protein Tax=candidate division NC10 bacterium UW 659-1-D11 RepID=UPI00036CE41D
Uncharacterized protein {ECO:0000313|EMBL:EKD72726.1}; species="Bacteria; environmental samples.;" source="uncultured bacterium.;"
hypothetical protein
PLM3_127_b2_sep16_scaffold_1433_9
Geobacter metallireducens, Geobacter, Desulfuromonadales, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(6558..7070)
DNA (513bp) protein (171aa)
Uncharacterized protein Tax=Geobacter metallireducens RepID=Q39SE5_GEOMG
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ABB32829.1}; species="Bacteria; Proteobacteria; Deltaproteobacteria; Desulfuromonadales; Geobacteraceae; Geobacter.;" source="Geobacter metallireducens (strain GS-15 / ATCC 53774 / DSM 7210).;"
PLM3_127_b2_sep16_scaffold_1433_10
unknown

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comp(7067..7297)
DNA (231bp) protein (77aa)

This feature has no annotations

PLM3_127_b2_sep16_scaffold_1433_11
Geobacter soli, Geobacter, Desulfuromonadales, Deltaproteobacteria, Proteobacteria, Bacteria

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comp(7302..7685)
DNA (384bp) protein (128aa)
Uncharacterized protein {ECO:0000313|EMBL:KIE41401.1}; species="Bacteria; Proteobacteria; Deltaproteobacteria; Desulfuromonadales; Geobacteraceae; Geobacter.;" source="Geobacter soli.;"
PLM3_127_b2_sep16_scaffold_1433_12

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comp(7682..8305)
DNA (624bp) protein (208aa)
RNA polymerase factor sigma-70 (EC:2.7.7.6)
RNA polymerase factor sigma-70 Tax=mine drainage metagenome RepID=T1B702_9ZZZZ
RNA polymerase factor sigma-70 {ECO:0000313|EMBL:EQD65632.1}; species="unclassified sequences; metagenomes; ecological metagenomes.;" source="mine drainage metagenome.;"
PLM3_127_b2_sep16_scaffold_1433_13
BJP_IG2102_Gammaproteobacteria_62_140, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

8484..10652
DNA (2169bp) protein (723aa)
hypothetical protein Tax=Thioalkalivibrio thiocyanodenitrificans RepID=UPI0003635318
primosomal protein N'
Tax=BJP_IG2102_Gammaproteobacteria_62_140
PLM3_127_b2_sep16_scaffold_1433_14
endosymbiont of Riftia pachyptila, Gammaproteobacteria, Proteobacteria, Bacteria

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10709..12466
DNA (1758bp) protein (586aa)
Arginine--tRNA ligase {ECO:0000256|HAMAP-Rule:MF_00123}; EC=6.1.1.19 {ECO:0000256|HAMAP-Rule:MF_00123};; Arginyl-tRNA synthetase {ECO:0000256|HAMAP-Rule:MF_00123}; species="Bacteria; Proteobacteria; Gammaproteobacteria; sulfur-oxidizing symbionts.;" source="endosymbiont of Riftia pachyptila (vent Ph05).;"
argS; arginyl-tRNA synthetase (EC:6.1.1.19)
Arginine--tRNA ligase Tax=sulfur-oxidizing symbionts RepID=G2DB76_9GAMM
PLM3_127_b2_sep16_scaffold_1433_15
Thioalkalivibrio sulfidiphilus, Thioalkalivibrio, Chromatiales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

12471..13025
DNA (555bp) protein (185aa)
hypothetical protein Tax=Thioalkalivibrio thiocyanodenitrificans RepID=UPI00036DFC10
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ACL71361.1}; Flags: Precursor;; species="Bacteria; Proteobacteria; Gammaproteobacteria; Chromatiales; Ectothiorhodospiraceae; Thioalkalivibrio.;" source="Thioalkalivibrio sulfidiphilus (strain HL-EbGR7).;"
PLM3_127_b2_sep16_scaffold_1433_16
Fulvivirga imtechensis, Fulvivirga, Cytophagales, Cytophagia, Bacteroidetes, Bacteria

Not on your lists

13045..14208
DNA (1164bp) protein (388aa)
Capsule biosynthesis protein capA Tax=Fulvivirga imtechensis AK7 RepID=L8JXN1_9BACT
Capsule biosynthesis protein capA {ECO:0000313|EMBL:ELR73801.1}; species="Bacteria; Bacteroidetes; Cytophagia; Cytophagales; Flammeovirgaceae; Fulvivirga.;" source="Fulvivirga imtechensis AK7.;"
capA; CapA family protein
PLM3_127_b2_sep16_scaffold_1433_17
Methylibium petroleiphilum, Methylibium, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(14171..16198)
DNA (2028bp) protein (676aa)
hypothetical protein Tax=Uliginosibacterium gangwonense RepID=UPI000364096C
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ABM93223.1}; species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Methylibium.;" source="Methylibium petroleiphilum (strain PM1).;"
PLM3_127_b2_sep16_scaffold_1433_18
RBG_16_Gamma2_64_10_curated, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(16306..17097)
DNA (792bp) protein (264aa)
Putative uncharacterized protein Tax=Legionella drancourtii LLAP12 RepID=G9EMY1_9GAMM
conserved protein of unknown function
Tax=RBG_16_Gamma2_64_10_curated
PLM3_127_b2_sep16_scaffold_1433_19
BJP_IG2102_Gammaproteobacteria_62_140, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(17094..17837)
DNA (744bp) protein (248aa)
hypothetical protein Tax=Dyella japonica RepID=UPI000300B0BE
hypothetical protein
Tax=BJP_IG2102_Gammaproteobacteria_62_140
PLM3_127_b2_sep16_scaffold_1433_20

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comp(17903..18172)
DNA (270bp) protein (90aa)
hypothetical protein Tax=Nevskia ramosa RepID=UPI0003B55D2E
Marine sediment metagenome DNA, contig: S01H1_L09253 {ECO:0000313|EMBL:GAF99169.1}; species="unclassified sequences; metagenomes; ecological metagenomes.;" source="marine sediment metagenome.;"
hypothetical protein
PLM3_127_b2_sep16_scaffold_1433_21
Haliangium ochraceum, Haliangium, Myxococcales, Deltaproteobacteria, Proteobacteria, Bacteria

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18421..19746
DNA (1326bp) protein (442aa)
Ste24 endopeptidase (EC:3.4.24.84)
Ste24 endopeptidase {ECO:0000313|EMBL:ACY18025.1}; EC=3.4.24.84 {ECO:0000313|EMBL:ACY18025.1};; Flags: Precursor;; species="Bacteria; Proteobacteria; Deltaproteobacteria; Myxococcales; Nannocystineae; Kofleriaceae; Haliangium.;" source="Haliangium ochraceum (strain DSM 14365 / JCM 11303 / SMP-2).;"
Ste24 endopeptidase Tax=Haliangium ochraceum (strain DSM 14365 / JCM 11303 / SMP-2) RepID=D0LZP6_HALO1
PLM3_127_b2_sep16_scaffold_1433_22
R_Gammaproteobacteria_63_22, Gammaproteobacteria, Proteobacteria, Bacteria

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comp(19768..20037)
DNA (270bp) protein (90aa)
thioesterase Tax=Arenimonas oryziterrae RepID=UPI0003B6E103
thioesterase-like protein
Tax=RIFCSPHIGHO2_12_FULL_Gammaproteobacteria_63_22_curated
Displaying 22 items

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