ggKbase home page

PLM3_127_b2_sep16_scaffold_1611

Search features with annotation key words

Displaying 30 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
PLM3_127_b2_sep16_scaffold_1611_1

Not on your lists

2..241
DNA (240bp) protein (80aa)
Amino acid permease domain protein Tax=mine drainage metagenome RepID=T1C5U7_9ZZZZ
Permease {ECO:0000313|EMBL:AHN97842.1}; species="Bacteria; environmental samples.;" source="uncultured bacterium lac121.;"
amino acid permease
PLM3_127_b2_sep16_scaffold_1611_2
RIFOXYA1_FULL_Alicyclobacillus_53_8_curated, Firmicutes, Bacteria

Not on your lists

254..862
DNA (609bp) protein (203aa)
GCN5-related N-acetyltransferase Tax=Cystobacter fuscus DSM 2262 RepID=S9QKK8_9DELT
GCN5 family acetyltransferase
Tax=RIFOXYA1_FULL_Alicyclobacillus_53_8_curated
PLM3_127_b2_sep16_scaffold_1611_3
unknown

Not on your lists

comp(891..1058)
DNA (168bp) protein (56aa)

This feature has no annotations

PLM3_127_b2_sep16_scaffold_1611_4
Parvibaculum lavamentivorans, Parvibaculum, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(1068..1934)
DNA (867bp) protein (289aa)
Acyl-CoA thioesterase II {ECO:0000313|EMBL:ABS64457.1}; EC=3.1.2.2 {ECO:0000313|EMBL:ABS64457.1};; species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhodobiaceae; Parvibaculum.;" source="Parvibaculum lavamentivorans (strain DS-1 / DSM 13023 / NCIMB 13966).;"
Acyl-CoA thioesterase II Tax=Parvibaculum lavamentivorans (strain DS-1 / DSM 13023 / NCIMB 13966) RepID=A7HX24_PARL1
acyl-CoA thioesterase II
PLM3_127_b2_sep16_scaffold_1611_5
Pyrinomonas methylaliphatogenes, Pyrinomonas, Acidobacteria, Bacteria

Not on your lists

2164..3300
DNA (1137bp) protein (379aa)
Aspartate kinase homoserine dehydrogenase {ECO:0000313|EMBL:CDM64086.1}; EC=1.1.1.3 {ECO:0000313|EMBL:CDM64086.1};; EC=2.7.2.4 {ECO:0000313|EMBL:CDM64086.1};; species="Bacteria; Acidobacteria; Acidobacteria subdivision 4; Pyrinomonas.;" source="Pyrinomonas methylaliphatogenes.;"
aspartate kinase (EC:1.1.1.3 2.7.2.4)
homoserine dehydrogenase Tax=Maricaulis sp. JL2009 RepID=UPI0003AA00D5
PLM3_127_b2_sep16_scaffold_1611_6
Xanthomonas arboricola, Xanthomonas, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(3250..3699)
DNA (450bp) protein (150aa)
azurin Tax=Xanthomonas arboricola RepID=UPI0003147566
Azurin {ECO:0000313|EMBL:KER84912.1}; species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Xanthomonas.;" source="Xanthomonas arboricola pv. celebensis.;"
electron transfer protein azurin I
PLM3_127_b2_sep16_scaffold_1611_7

Not on your lists

comp(3717..4103)
DNA (387bp) protein (129aa)
trxB2; thioredoxin reductase (EC:1.8.1.9)
Thioredoxin-disulfide reductase Tax=mine drainage metagenome RepID=T0YVP8_9ZZZZ
Thioredoxin-disulfide reductase {ECO:0000313|EMBL:EQD37098.1}; species="unclassified sequences; metagenomes; ecological metagenomes.;" source="mine drainage metagenome.;"
PLM3_127_b2_sep16_scaffold_1611_8
unknown

Not on your lists

4357..4869
DNA (513bp) protein (171aa)

This feature has no annotations

PLM3_127_b2_sep16_scaffold_1611_9

Not on your lists

comp(4829..5389)
DNA (561bp) protein (187aa)
Uncharacterized protein Tax=uncultured bacterium RepID=K1ZQI0_9BACT
Uncharacterized protein {ECO:0000313|EMBL:EKD51952.1}; species="Bacteria; environmental samples.;" source="uncultured bacterium.;"
signal peptide
PLM3_127_b2_sep16_scaffold_1611_10
Gemmatimonadetes bacterium KBS708, Gemmatimonadetes, Gemmatimonadetes, Bacteria

Not on your lists

comp(5468..6139)
DNA (672bp) protein (224aa)
Rieske (2Fe-2S) domain protein Tax=Roseiflexus castenholzii (strain DSM 13941 / HLO8) RepID=A7NQI4_ROSCS
Aromatic-ring-hydroxylating dioxygenase, alpha subunit
Aromatic-ring-hydroxylating dioxygenase, alpha subunit {ECO:0000313|EMBL:AHG92764.1}; species="Bacteria; Gemmatimonadetes.;" source="Gemmatimonadetes bacterium KBS708.;"
PLM3_127_b2_sep16_scaffold_1611_11
unknown

Not on your lists

6208..6447
DNA (240bp) protein (80aa)

This feature has no annotations

PLM3_127_b2_sep16_scaffold_1611_12
RBG_16_Gammaproteobacteria_57_12_curated, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(6523..9027)
DNA (2505bp) protein (835aa)
signal peptide protein Tax=Brevibacillus brevis RepID=UPI000375B0C3
PAS domain S-box/diguanylate cyclase (GGDEF) domain-containing protein
Tax=RBG_16_Gammaproteobacteria_57_12_curated
PLM3_127_b2_sep16_scaffold_1611_13
R_Gammaproteobacteria_61_13, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

9322..10632
DNA (1311bp) protein (437aa)
4-aminobutyrate aminotransferase (EC:2.6.1.19)
Gamma-aminobutyrate alpha-ketoglutarate aminotransferase Tax=Caenispirillum salinarum AK4 RepID=K9HF83_9PROT
Tax=RIFCSPLOWO2_02_FULL_Gammaproteobacteria_61_13_curated
PLM3_127_b2_sep16_scaffold_1611_14
RIFOXYD12_FULL_Gammaproteobacteria_61_37_curated, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(10640..11182)
DNA (543bp) protein (181aa)
hypothetical protein Tax=Lamprocystis purpurea RepID=UPI00037CFF55
hypothetical protein
Tax=RIFOXYD12_FULL_Gammaproteobacteria_61_37_curated
PLM3_127_b2_sep16_scaffold_1611_15
Pseudomonas stutzeri, Pseudomonas, Pseudomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(11179..13479)
DNA (2301bp) protein (767aa)
Penicillin-binding protein 1B Tax=Pseudomonas stutzeri CCUG 29243 RepID=I4CPW9_PSEST
Penicillin-binding protein 1B {ECO:0000256|PIRNR:PIRNR002799}; Short=PBP-1b {ECO:0000256|PIRNR:PIRNR002799};; Short=PBP1b {ECO:0000256|PIRNR:PIRNR002799};; Murein polymerase {ECO:0000256|PIRNR:PIRNR002799}; species="Bacteria; Proteobacteria; Gammaproteobacteria; Pseudomonadales; Pseudomonadaceae; Pseudomonas.;" source="Pseudomonas stutzeri (Pseudomonas perfectomarina).;"
penicillin-binding protein 1B
PLM3_127_b2_sep16_scaffold_1611_16
Colwellia psychrerythraea, Colwellia, Alteromonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

13854..14738
DNA (885bp) protein (295aa)
LysR family transcriptional regulator Tax=Rheinheimera perlucida RepID=UPI0003709AD1
LysR family transcriptional regulator
Substrate-binding transcriptional regulator, LysR family {ECO:0000313|EMBL:AAZ24485.1}; species="Bacteria; Proteobacteria; Gammaproteobacteria; Alteromonadales; Colwelliaceae; Colwellia.;" source="Colwellia psychrerythraea (strain 34H / ATCC BAA-681) (Vibrio; psychroerythus).;"
PLM3_127_b2_sep16_scaffold_1611_17
unknown

Not on your lists

14849..15229
DNA (381bp) protein (127aa)

This feature has no annotations

PLM3_127_b2_sep16_scaffold_1611_18
Desulfuromonas acetoxidans, Desulfuromonas, Desulfuromonadales, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

15399..15854
DNA (456bp) protein (152aa)
17 kDa surface antigen Tax=Desulfuromonas acetoxidans DSM 684 RepID=Q1JZJ9_DESAC
17 kDa surface antigen {ECO:0000313|EMBL:EAT15568.1}; Flags: Precursor;; species="Bacteria; Proteobacteria; Deltaproteobacteria; Desulfuromonadales; Desulfuromonadaceae; Desulfuromonas.;" source="Desulfuromonas acetoxidans DSM 684.;"
Outer membrane protein
PLM3_127_b2_sep16_scaffold_1611_19
RIFOXYB12_FULL_Lentisphaerae_65_16_curated, Lentisphaerae, Bacteria

Not on your lists

comp(15993..16796)
DNA (804bp) protein (268aa)
Uncharacterized protein Tax=Sulfuricella denitrificans skB26 RepID=S6ADW5_9PROT
hypothetical protein
Tax=RIFOXYB12_FULL_Lentisphaerae_65_16_curated
PLM3_127_b2_sep16_scaffold_1611_20
unknown

Not on your lists

16953..18122
DNA (1170bp) protein (390aa)

This feature has no annotations

PLM3_127_b2_sep16_scaffold_1611_21
R_Acidobacteria_65_29, Acidobacteria, Bacteria

Not on your lists

comp(18245..18694)
DNA (450bp) protein (150aa)
Aminotransferase, class V/cysteine desulfurase Tax=Myxococcus stipitatus (strain DSM 14675 / JCM 12634 / Mx s8) RepID=L7UL11_MYXSD
aminotransferase, class V/cysteine desulfurase
Tax=RIFCSPLOWO2_02_FULL_Acidobacteria_65_29_curated
PLM3_127_b2_sep16_scaffold_1611_22

Not on your lists

comp(18856..19131)
DNA (276bp) protein (92aa)
RNP-1 like RNA-binding protein Tax=mine drainage metagenome RepID=T1BVU3_9ZZZZ
RNP-1 like RNA-binding protein {ECO:0000313|EMBL:EQD74002.1}; species="unclassified sequences; metagenomes; ecological metagenomes.;" source="mine drainage metagenome.;"
RNP-1 like RNA-binding protein
PLM3_127_b2_sep16_scaffold_1611_23
unknown

Not on your lists

19400..19696
DNA (297bp) protein (99aa)

This feature has no annotations

PLM3_127_b2_sep16_scaffold_1611_24
Sulfuricella sp. T08, Sulfuricella, Sulfuricellales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(19693..21717)
DNA (2025bp) protein (675aa)
Peptidase Tax=Sulfuricella denitrificans skB26 RepID=S6B5U2_9PROT
Peptidase C1 {ECO:0000313|EMBL:GAO37744.1}; species="Bacteria; Proteobacteria; Betaproteobacteria; Sulfuricellales; Sulfuricellaceae; Sulfuricella.;" source="Sulfuricella sp. T08.;"
peptidase
PLM3_127_b2_sep16_scaffold_1611_25
GWF2_Lentisphaerae_57_35_curated, Lentisphaerae, Bacteria

Not on your lists

21926..22276
DNA (351bp) protein (117aa)
Uncharacterized protein bin=GWF2_Lentisphaerae_57_35 species=unknown genus=Rhodanobacter taxon_order=Xanthomonadales taxon_class=Gammaproteobacteria phylum=Proteobacteria tax=GWF2_Lentisphaerae_57_35 organism_group=Lentisphaerae organism_desc=a459
hypothetical protein
Tax=GWF2_Lentisphaerae_57_35_curated
PLM3_127_b2_sep16_scaffold_1611_26
R_Gamma2_60_33, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

22357..22464
DNA (108bp) protein (36aa)
Tax=RIFCSPHIGHO2_12_FULL_Gamma2_60_33_curated
PLM3_127_b2_sep16_scaffold_1611_27
unknown

Not on your lists

22469..23044
DNA (576bp) protein (192aa)

This feature has no annotations

PLM3_127_b2_sep16_scaffold_1611_28
Nitrosococcus halophilus, Nitrosococcus, Chromatiales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

23318..24955
DNA (1638bp) protein (546aa)
Tetratricopeptide TPR_4 Tax=Nitrosococcus halophilus (strain Nc4) RepID=D5C3S5_NITHN
hypothetical protein
Tetratricopeptide TPR_4 {ECO:0000313|EMBL:ADE15047.1}; Flags: Precursor;; species="Bacteria; Proteobacteria; Gammaproteobacteria; Chromatiales; Chromatiaceae; Nitrosococcus.;" source="Nitrosococcus halophilus (strain Nc4).;"
PLM3_127_b2_sep16_scaffold_1611_29
R_Acidobacteria_67_28, Acidobacteria, Bacteria

Not on your lists

comp(24890..25555)
DNA (666bp) protein (222aa)
Daunorubicin resistance ABC transporter, inner membrane subunit B bin=GWC2_Ignavibacteria_56_12 species=unknown genus=Methanocaldococcus taxon_order=Methanococcales taxon_class=Methanococci phylum=Euryarchaeota tax=GWC2_Ignavibacteria_56_12 organism_group=Ignavibacteria organism_desc=Larger genome
daunorubicin resistance membrane protein
Tax=RIFCSPHIGHO2_01_FULL_Acidobacteria_67_28_curated
PLM3_127_b2_sep16_scaffold_1611_30
R_Acidobacteria_67_28, Acidobacteria, Bacteria

Not on your lists

comp(25552..25917)
DNA (366bp) protein (122aa)
ABC efflux transporter, ATP-binding protein bin=GWC2_Ignavibacteria_56_12 species=Candidatus Nitrososphaera gargensis genus=Nitrososphaera taxon_order=Nitrososphaerales taxon_class=unknown phylum=Thaumarchaeota tax=GWC2_Ignavibacteria_56_12 organism_group=Ignavibacteria organism_desc=Larger genome
ABC transporter ATP-binding protein
Tax=RIFCSPHIGHO2_01_FULL_Acidobacteria_67_28_curated
Displaying 30 items

View Taxonomy