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PLM3_127_b2_sep16_scaffold_624

Search features with annotation key words

Displaying 30 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
PLM3_127_b2_sep16_scaffold_624_1
unknown

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comp(1..261)
DNA (261bp) protein (87aa)

This feature has no annotations

PLM3_127_b2_sep16_scaffold_624_2
Alcanivorax pacificus, Alcanivorax, Oceanospirillales, Gammaproteobacteria, Proteobacteria, Bacteria

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comp(488..1021)
DNA (534bp) protein (178aa)
Uncharacterized protein Tax=Alcanivorax pacificus W11-5 RepID=K2FXD5_9GAMM
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AJD46719.1}; species="Bacteria; Proteobacteria; Gammaproteobacteria; Oceanospirillales; Alcanivoracaceae; Alcanivorax.;" source="Alcanivorax pacificus W11-5.;"
PLM3_127_b2_sep16_scaffold_624_3
Halomonas hydrothermalis, Halomonas, Oceanospirillales, Gammaproteobacteria, Proteobacteria, Bacteria

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comp(1068..1616)
DNA (549bp) protein (183aa)
peptidase M23 Tax=Halomonas stevensii RepID=UPI00030F7263
Peptidase M23 {ECO:0000313|EMBL:KHJ51400.1}; species="Bacteria; Proteobacteria; Gammaproteobacteria; Oceanospirillales; Halomonadaceae; Halomonas.;" source="Halomonas hydrothermalis.;"
peptidase M23
PLM3_127_b2_sep16_scaffold_624_4
Thioalkalivibrio nitratireducens, Thioalkalivibrio, Chromatiales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

1636..2094
DNA (459bp) protein (153aa)
sulfurtransferase Tax=Thioalkalivibrio sp. ALJ16 RepID=UPI00035DF5C9
yibN_[H]; Rhodanese domain protein
Rhodanese domain protein {ECO:0000313|EMBL:AGA35357.1}; species="Bacteria; Proteobacteria; Gammaproteobacteria; Chromatiales; Ectothiorhodospiraceae; Thioalkalivibrio.;" source="Thioalkalivibrio nitratireducens (strain DSM 14787 / UNIQEM 213 /; ALEN2).;"
PLM3_127_b2_sep16_scaffold_624_5
Pseudomonas stutzeri, Pseudomonas, Pseudomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

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2091..2348
DNA (258bp) protein (86aa)
Glutaredoxin Tax=Pseudomonas stutzeri DSM 10701 RepID=I6Z8Z9_PSEST
glutaredoxin
Uncharacterized protein {ECO:0000313|EMBL:AFN79687.1}; species="Bacteria; Proteobacteria; Gammaproteobacteria; Pseudomonadales; Pseudomonadaceae; Pseudomonas.;" source="Pseudomonas stutzeri DSM 10701.;"
PLM3_127_b2_sep16_scaffold_624_6

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2345..2818
DNA (474bp) protein (158aa)
Preprotein translocase subunit SecB Tax=mine drainage metagenome RepID=T0ZHU7_9ZZZZ
Preprotein translocase subunit SecB {ECO:0000313|EMBL:EQD44263.1}; species="unclassified sequences; metagenomes; ecological metagenomes.;" source="mine drainage metagenome.;"
secB; protein-export protein SecB
PLM3_127_b2_sep16_scaffold_624_7
BJP_IG2102_Gammaproteobacteria_62_140, Gammaproteobacteria, Proteobacteria, Bacteria

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2846..3865
DNA (1020bp) protein (340aa)
gpsA; Glycerol-3-phosphate dehydrogenase [NAD(P)+] (EC:1.1.1.94)
Glycerol-3-phosphate dehydrogenase [NAD(P)+] Tax=Hydrocarboniphaga effusa AP103 RepID=I7ZI53_9GAMM
Tax=BJP_IG2102_Gammaproteobacteria_62_140
PLM3_127_b2_sep16_scaffold_624_8
Candidatus Nitrospira defluvii, Nitrospira, Nitrospirales, Nitrospira, Nitrospirae, Bacteria

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comp(3862..4320)
DNA (459bp) protein (153aa)
yibK; RNA methyltransferase TrmH, group 2 (EC:2.1.1.-)
Putative tRNA (cytidine(34)-2'-O)-methyltransferase {ECO:0000256|HAMAP-Rule:MF_01885}; EC=2.1.1.207 {ECO:0000256|HAMAP-Rule:MF_01885};; tRNA (cytidine/uridine-2'-O-)-methyltransferase {ECO:0000256|HAMAP-Rule:MF_01885}; species="Bacteria; Nitrospirae; Nitrospirales; Nitrospiraceae; Nitrospira.;" source="Candidatus Nitrospira defluvii.;"
Putative tRNA (cytidine(34)-2'-O)-methyltransferase Tax=Candidatus Nitrospira defluvii RepID=D8PHX5_9BACT
PLM3_127_b2_sep16_scaffold_624_9
Halorhodospira halochloris, Halorhodospira, Chromatiales, Gammaproteobacteria, Proteobacteria, Bacteria

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4412..5299
DNA (888bp) protein (296aa)
Dihydroorotate dehydrogenase {ECO:0000256|HAMAP-Rule:MF_00224}; Short=DHOD {ECO:0000256|HAMAP-Rule:MF_00224};; Short=DHODase {ECO:0000256|HAMAP-Rule:MF_00224};; Short=DHOdehase {ECO:0000256|HAMAP-Rule:MF_00224};; EC=1.3.-.- {ECO:0000256|HAMAP-Rule:MF_00224};; species="Bacteria; Proteobacteria; Gammaproteobacteria; Chromatiales; Ectothiorhodospiraceae; Halorhodospira.;" source="Halorhodospira halochloris str. A.;"
diguanylate cyclase Tax=Thioalkalivibrio sp. ALJ17 RepID=UPI0003712896
diguanylate cyclase
PLM3_127_b2_sep16_scaffold_624_10
Halorhodospira halophila, Halorhodospira, Chromatiales, Gammaproteobacteria, Proteobacteria, Bacteria

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comp(5317..6723)
DNA (1407bp) protein (469aa)
Nitrogen metabolism transcriptional regulator, NtrC, Fis Family Tax=Halorhodospira halophila (strain DSM 244 / SL1) RepID=A1WWC8_HALHL
nitrogen metabolism transcriptional regulator NtrC
Nitrogen metabolism transcriptional regulator, NtrC, Fis Family {ECO:0000313|EMBL:ABM61990.1}; species="Bacteria; Proteobacteria; Gammaproteobacteria; Chromatiales; Ectothiorhodospiraceae; Halorhodospira.;" source="Halorhodospira halophila (strain DSM 244 / SL1) (Ectothiorhodospira; halophila (strain DSM 244 / SL1)).;"
PLM3_127_b2_sep16_scaffold_624_11

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comp(6713..7813)
DNA (1101bp) protein (367aa)
Signal transduction histidine kinase, nitrogen specific, NtrB (Fragment) Tax=mine drainage metagenome RepID=T1CQB1_9ZZZZ
Signal transduction histidine kinase, nitrogen specific, NtrB {ECO:0000313|EMBL:EQD70694.1}; Flags: Fragment;; species="unclassified sequences; metagenomes; ecological metagenomes.;" source="mine drainage metagenome.;"
signal transduction histidine kinase, nitrogen specific, NtrB
PLM3_127_b2_sep16_scaffold_624_12
Nitrococcus mobilis, Nitrococcus, Chromatiales, Gammaproteobacteria, Proteobacteria, Bacteria

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comp(7860..8411)
DNA (552bp) protein (184aa)
Uncharacterized protein Tax=Nitrococcus mobilis Nb-231 RepID=A4BTX1_9GAMM
Uncharacterized protein {ECO:0000313|EMBL:EAR20792.1}; species="Bacteria; Proteobacteria; Gammaproteobacteria; Chromatiales; Ectothiorhodospiraceae; Nitrococcus.;" source="Nitrococcus mobilis Nb-231.;"
predicted periplasmic protein
PLM3_127_b2_sep16_scaffold_624_13
Methylococcus capsulatus, Methylococcus, Methylococcales, Gammaproteobacteria, Proteobacteria, Bacteria

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comp(8530..9939)
DNA (1410bp) protein (470aa)
glnA; glutamine synthetase (EC:6.3.1.2)
Glutamine synthetase; EC=6.3.1.2;; Glutamate--ammonia ligase; species="Bacteria; Proteobacteria; Gammaproteobacteria; Methylococcales; Methylococcaceae; Methylococcus.;" source="Methylococcus capsulatus (strain ATCC 33009 / NCIMB 11132 / Bath).;"
Glutamine synthetase Tax=Methylococcus capsulatus (strain ATCC 33009 / NCIMB 11132 / Bath) RepID=GLNA_METCA
PLM3_127_b2_sep16_scaffold_624_14

Not on your lists

10308..11243
DNA (936bp) protein (312aa)
glycyl-tRNA synthetase subunit alpha (EC:6.1.1.14)
Glycyl-tRNA synthetase subunit alpha Tax=mine drainage metagenome RepID=T1BJ78_9ZZZZ
Glycyl-tRNA synthetase subunit alpha {ECO:0000313|EMBL:EQD69802.1}; species="unclassified sequences; metagenomes; ecological metagenomes.;" source="mine drainage metagenome.;"
PLM3_127_b2_sep16_scaffold_624_15
Candidatus Competibacter denitrificans, Candidatus Competibacter, Gammaproteobacteria, Proteobacteria, Bacteria

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11240..13339
DNA (2100bp) protein (700aa)
Glycine--tRNA ligase beta subunit {ECO:0000256|HAMAP-Rule:MF_00255, ECO:0000256|SAAS:SAAS00039777}; EC=6.1.1.14 {ECO:0000256|HAMAP-Rule:MF_00255, ECO:0000256|SAAS:SAAS00039811};; Glycyl-tRNA synthetase beta subunit {ECO:0000256|HAMAP-Rule:MF_00255}; species="Bacteria; Proteobacteria; Gammaproteobacteria; Competibacteraceae; Candidatus Competibacter.;" source="Candidatus Competibacter denitrificans Run_A_D11.;"
glycine--tRNA ligase (EC:6.1.1.14)
glycyl-tRNA synthetase Tax=Thioalkalivibrio sp. ALJ17 RepID=UPI000363E153
PLM3_127_b2_sep16_scaffold_624_16

Not on your lists

13341..14051
DNA (711bp) protein (237aa)
Phospholipid/glycerol acyltransferase (Fragment) Tax=mine drainage metagenome RepID=T1ASB9_9ZZZZ
Phospholipid/glycerol acyltransferase {ECO:0000313|EMBL:EQD44950.1}; Flags: Fragment;; species="unclassified sequences; metagenomes; ecological metagenomes.;" source="mine drainage metagenome.;"
phospholipid/glycerol acyltransferase
PLM3_127_b2_sep16_scaffold_624_17
endosymbiont of unidentified scaly snail isolate Monju, Gammaproteobacteria, Proteobacteria, Bacteria

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comp(14070..16487)
DNA (2418bp) protein (806aa)
DNA gyrase subunit B {ECO:0000256|HAMAP-Rule:MF_01898, ECO:0000256|RuleBase:RU003363}; EC=5.99.1.3 {ECO:0000256|HAMAP-Rule:MF_01898, ECO:0000256|RuleBase:RU003363};; species="Bacteria; Proteobacteria; Gammaproteobacteria.;" source="endosymbiont of unidentified scaly snail isolate Monju.;"
DNA gyrase subunit B Tax=endosymbiont of unidentified scaly snail isolate Monju RepID=S6CE95_9GAMM
gyrB; DNA gyrase subunit B
PLM3_127_b2_sep16_scaffold_624_18
Salinisphaera hydrothermalis, Salinisphaera, Salinisphaerales, Gammaproteobacteria, Proteobacteria, Bacteria

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comp(16480..17580)
DNA (1101bp) protein (367aa)
DNA replication and repair protein RecF Tax=Plesiomonas shigelloides 302-73 RepID=R8AS65_PLESH
DNA replication and repair protein RecF {ECO:0000256|HAMAP-Rule:MF_00365, ECO:0000256|SAAS:SAAS00122784}; species="Bacteria; Proteobacteria; Gammaproteobacteria; Salinisphaerales; Salinisphaeraceae; Salinisphaera.;" source="Salinisphaera hydrothermalis C41B8.;"
recombinase RecF
PLM3_127_b2_sep16_scaffold_624_19
Thioalkalivibrio sulfidiphilus, Thioalkalivibrio, Chromatiales, Gammaproteobacteria, Proteobacteria, Bacteria

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comp(17616..18713)
DNA (1098bp) protein (366aa)
DNA polymerase III subunit beta (EC:2.7.7.7)
DNA polymerase III subunit beta {ECO:0000256|PIRNR:PIRNR000804, ECO:0000256|SAAS:SAAS00018186}; EC=2.7.7.7 {ECO:0000256|PIRNR:PIRNR000804, ECO:0000256|SAAS:SAAS00018259};; species="Bacteria; Proteobacteria; Gammaproteobacteria; Chromatiales; Ectothiorhodospiraceae; Thioalkalivibrio.;" source="Thioalkalivibrio sulfidiphilus (strain HL-EbGR7).;"
DNA polymerase III subunit beta Tax=Thioalkalivibrio sp. ALJ17 RepID=UPI00035C65A9
PLM3_127_b2_sep16_scaffold_624_20
Alkalilimnicola ehrlichii, Alkalilimnicola, Chromatiales, Gammaproteobacteria, Proteobacteria, Bacteria

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comp(18918..20258)
DNA (1341bp) protein (447aa)
chromosomal replication initiation protein Tax=Arhodomonas aquaeolei RepID=UPI00036B779B
dnaA; chromosome replication initiator DnaA
Chromosomal replication initiator protein DnaA {ECO:0000255|HAMAP-Rule:MF_00377}; species="Bacteria; Proteobacteria; Gammaproteobacteria; Chromatiales; Ectothiorhodospiraceae; Alkalilimnicola.;" source="Alkalilimnicola ehrlichii (strain ATCC BAA-1101 / DSM 17681 / MLHE-1).;"
PLM3_127_b2_sep16_scaffold_624_21

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20981..21232
DNA (252bp) protein (84aa)
Protein containing DUF37 Tax=mine drainage metagenome RepID=T1C6J7_9ZZZZ
Protein containing DUF37 {ECO:0000313|EMBL:EQD60924.1}; species="unclassified sequences; metagenomes; ecological metagenomes.;" source="mine drainage metagenome.;"
hypothetical protein
PLM3_127_b2_sep16_scaffold_624_22
Thioalkalivibrio sulfidiphilus, Thioalkalivibrio, Chromatiales, Gammaproteobacteria, Proteobacteria, Bacteria

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21225..22919
DNA (1695bp) protein (565aa)
Membrane protein insertase YidC Tax=Thioalkalivibrio sp. (strain HL-EbGR7) RepID=YIDC_THISH
protein translocase subunit YidC
Membrane protein insertase YidC {ECO:0000255|HAMAP-Rule:MF_01810}; Foldase YidC {ECO:0000255|HAMAP-Rule:MF_01810}; Membrane integrase YidC {ECO:0000255|HAMAP-Rule:MF_01810}; Membrane protein YidC {ECO:0000255|HAMAP-Rule:MF_01810}; species="Bacteria; Proteobacteria; Gammaproteobacteria; Chromatiales; Ectothiorhodospiraceae; Thioalkalivibrio.;" source="Thioalkalivibrio sulfidiphilus (strain HL-EbGR7).;"
PLM3_127_b2_sep16_scaffold_624_23
unknown

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comp(23011..23181)
DNA (171bp) protein (57aa)

This feature has no annotations

PLM3_127_b2_sep16_scaffold_624_24
RIFCSPLOWO2_12_FULL_Betaproteobacteria_62_58_curated, Betaproteobacteria, Proteobacteria, Bacteria

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23695..24717
DNA (1023bp) protein (341aa)
Predicted GTPase bin=GWA2_Methylomirabilis_73_35 species=Cupriavidus necator genus=Cupriavidus taxon_order=Burkholderiales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
GTPase
Tax=RIFCSPLOWO2_12_FULL_Betaproteobacteria_62_58_curated
PLM3_127_b2_sep16_scaffold_624_25
RIFCSPLOWO2_12_FULL_Betaproteobacteria_62_13_curated, Betaproteobacteria, Proteobacteria, Bacteria

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comp(24734..25378)
DNA (645bp) protein (215aa)
hypothetical protein Tax=Azoarcus toluclasticus RepID=UPI000364D870
hypothetical protein
Tax=RIFCSPLOWO2_12_FULL_Betaproteobacteria_62_13_curated
PLM3_127_b2_sep16_scaffold_624_26
Sedimenticola sp. SIP-G1, Sedimenticola, Gammaproteobacteria, Proteobacteria, Bacteria

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25592..26944
DNA (1353bp) protein (451aa)
tRNA modification GTPase MnmE Tax=Erwinia billingiae (strain Eb661) RepID=D8MMI8_ERWBE
Uncharacterized protein {ECO:0000313|EMBL:AKH21110.1}; species="Bacteria; Proteobacteria; Gammaproteobacteria; Sedimenticola.;" source="Sedimenticola sp. SIP-G1.;"
trmE; tRNA modification GTPase
PLM3_127_b2_sep16_scaffold_624_27
Solemya velum gill symbiont, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

27034..27600
DNA (567bp) protein (189aa)
hypothetical protein Tax=Thioalkalivibrio thiocyanodenitrificans RepID=UPI00035EB809
Uncharacterized protein {ECO:0000313|EMBL:KHF25263.1}; species="Bacteria; Proteobacteria; Gammaproteobacteria; sulfur-oxidizing symbionts.;" source="Solemya velum gill symbiont.;"
hypothetical protein
PLM3_127_b2_sep16_scaffold_624_28
Oscillatoriales cyanobacterium JSC-12, Oscillatoriales, Oscillatoriophycideae, Cyanobacteria, Bacteria

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comp(27657..28238)
DNA (582bp) protein (194aa)
TIGR00730 family protein Tax=Oscillatoriales cyanobacterium JSC-12 RepID=K8GFL2_9CYAN
TIGR00730 family protein {ECO:0000313|EMBL:EKQ67772.1}; species="Bacteria; Cyanobacteria; Oscillatoriophycideae; Oscillatoriales.;" source="Oscillatoriales cyanobacterium JSC-12.;"
LOG family protein
PLM3_127_b2_sep16_scaffold_624_29
R_Acidobacteria_61_28, Acidobacteria, Bacteria

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comp(28253..29725)
DNA (1473bp) protein (491aa)
Uncharacterized protein Tax=Chroococcidiopsis thermalis PCC 7203 RepID=K9TXH8_9CYAN
hypothetical protein
Tax=RIFCSPLOWO2_02_FULL_Acidobacteria_61_28_curated
PLM3_127_b2_sep16_scaffold_624_30
R_Betaproteobacteria_67_26, Betaproteobacteria, Proteobacteria, Bacteria

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29809..30621
DNA (813bp) protein (271aa)
Hydratase/decarboxylase Tax=Methylobacterium sp. (strain 4-46) RepID=B0UD95_METS4
hydratase/decarboxylase
Tax=RIFCSPLOWO2_02_FULL_Betaproteobacteria_67_26_curated
Displaying 30 items

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