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PLM3_127_b2_sep16_scaffold_5077

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Displaying 18 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
PLM3_127_b2_sep16_scaffold_5077_1
unknown

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2..1030
DNA (1029bp) protein (343aa)

This feature has no annotations

PLM3_127_b2_sep16_scaffold_5077_2
BJP_08E140C01_Anaerolineales_40_8, Anaerolineales, Anaerolineae, Chloroflexi, Bacteria

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comp(1082..2341)
DNA (1260bp) protein (420aa)
rrs:RoseRS_1669 protein kinase bin=RBG9 species=RBG9 genus=RBG9 taxon_order=RBG9 taxon_class=RBG9 phylum=Chloroflexi tax=RBG9 organism_group=Chloroflexi
TPR repeat-containing serine/threonine protein kinase
Tax=BJP_08E140C01_Anaerolineales_40_8
PLM3_127_b2_sep16_scaffold_5077_3
unknown

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2515..2697
DNA (183bp) protein (61aa)

This feature has no annotations

PLM3_127_b2_sep16_scaffold_5077_4

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2868..3881
DNA (1014bp) protein (338aa)
aroF; phospho-2-dehydro-3-deoxyheptonate aldolase (EC:2.5.1.54)
Phospho-2-dehydro-3-deoxyheptonate aldolase Tax=Anaerolinea thermophila (strain DSM 14523 / JCM 11388 / NBRC 100420 / UNI-1) RepID=E8MZ78_ANATU
Marine sediment metagenome DNA, contig: S01H1_C00549 {ECO:0000313|EMBL:GAF79036.1}; species="unclassified sequences; metagenomes; ecological metagenomes.;" source="marine sediment metagenome.;"
PLM3_127_b2_sep16_scaffold_5077_5
Leptolyngbya sp. Heron Island J, Leptolyngbya, Oscillatoriales, Oscillatoriophycideae, Cyanobacteria, Bacteria

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3960..4358
DNA (399bp) protein (133aa)
Chp02436-containing protein Tax=Leptolyngbya sp. Heron Island J RepID=U9W3L1_9CYAN
Chp02436-containing protein {ECO:0000313|EMBL:ESA34646.1}; species="Bacteria; Cyanobacteria; Oscillatoriophycideae; Oscillatoriales; Leptolyngbya.;" source="Leptolyngbya sp. Heron Island J.;"
hypothetical protein
PLM3_127_b2_sep16_scaffold_5077_6
RBG_16_Chloroflexi_57_9_curated, Chloroflexi, Bacteria

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4466..5293
DNA (828bp) protein (276aa)
Putative prephenate dehydrogenase Tax=Caldilinea aerophila (strain DSM 14535 / JCM 11387 / NBRC 104270 / STL-6-O1) RepID=I0I4M6_CALAS
putative prephenate dehydrogenase
Tax=RBG_16_Chloroflexi_57_9_curated
PLM3_127_b2_sep16_scaffold_5077_7
Anabaena variabilis, Anabaena, Nostocales, Cyanobacteria, Bacteria

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5318..5641
DNA (324bp) protein (108aa)
aroA; 3-phosphoshikimate 1-carboxyvinyltransferase (EC:2.5.1.19)
3-phosphoshikimate 1-carboxyvinyltransferase {ECO:0000255|HAMAP-Rule:MF_00210}; EC=2.5.1.19 {ECO:0000255|HAMAP-Rule:MF_00210};; 5-enolpyruvylshikimate-3-phosphate synthase {ECO:0000255|HAMAP-Rule:MF_00210}; Short=EPSP synthase {ECO:0000255|HAMAP-Rule:MF_00210};; Short=EPSPS {ECO:0000255|HAMAP-Rule:MF_00210};; species="Bacteria; Cyanobacteria; Nostocales; Nostocaceae; Anabaena.;" source="Anabaena variabilis (strain ATCC 29413 / PCC 7937).;"
3-phosphoshikimate 1-carboxyvinyltransferase Tax=Anabaena variabilis (strain ATCC 29413 / PCC 7937) RepID=AROA_ANAVT
PLM3_127_b2_sep16_scaffold_5077_8
Anabaena variabilis, Anabaena, Nostocales, Cyanobacteria, Bacteria

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5696..6613
DNA (918bp) protein (306aa)
3-phosphoshikimate 1-carboxyvinyltransferase (EC:2.5.1.19)
3-phosphoshikimate 1-carboxyvinyltransferase {ECO:0000255|HAMAP-Rule:MF_00210}; EC=2.5.1.19 {ECO:0000255|HAMAP-Rule:MF_00210};; 5-enolpyruvylshikimate-3-phosphate synthase {ECO:0000255|HAMAP-Rule:MF_00210}; Short=EPSP synthase {ECO:0000255|HAMAP-Rule:MF_00210};; Short=EPSPS {ECO:0000255|HAMAP-Rule:MF_00210};; species="Bacteria; Cyanobacteria; Nostocales; Nostocaceae; Anabaena.;" source="Anabaena variabilis (strain ATCC 29413 / PCC 7937).;"
3-phosphoshikimate 1-carboxyvinyltransferase Tax=Anabaena variabilis (strain ATCC 29413 / PCC 7937) RepID=AROA_ANAVT
PLM3_127_b2_sep16_scaffold_5077_9
RBG_16_Chloroflexi_57_9_curated, Chloroflexi, Bacteria

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6677..7573
DNA (897bp) protein (299aa)
Shikimate 5-dehydrogenase Tax=Caldilinea aerophila (strain DSM 14535 / JCM 11387 / NBRC 104270 / STL-6-O1) RepID=I0I254_CALAS
aroE; shikimate 5-dehydrogenase
Tax=RBG_16_Chloroflexi_57_9_curated
PLM3_127_b2_sep16_scaffold_5077_10
Caldilinea aerophila, Caldilinea, Caldilineales, Caldilineae, Chloroflexi, Bacteria

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7683..8327
DNA (645bp) protein (215aa)
Chorismate synthase {ECO:0000256|HAMAP-Rule:MF_00300}; Short=CS {ECO:0000256|HAMAP-Rule:MF_00300};; EC=4.2.3.5 {ECO:0000256|HAMAP-Rule:MF_00300};; 5-enolpyruvylshikimate-3-phosphate phospholyase {ECO:0000256|HAMAP-Rule:MF_00300}; species="Bacteria; Chloroflexi; Caldilineae; Caldilineales; Caldilineaceae; Caldilinea.;" source="Caldilinea aerophila (strain DSM 14535 / JCM 11387 / NBRC 104270 /; STL-6-O1).;"
Chorismate synthase Tax=Caldilinea aerophila (strain DSM 14535 / JCM 11387 / NBRC 104270 / STL-6-O1) RepID=I0I0I5_CALAS
aroC; chorismate synthase
PLM3_127_b2_sep16_scaffold_5077_11
Caldilinea aerophila, Caldilinea, Caldilineales, Caldilineae, Chloroflexi, Bacteria

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8417..9043
DNA (627bp) protein (209aa)
Chorismate synthase {ECO:0000256|HAMAP-Rule:MF_00300}; Short=CS {ECO:0000256|HAMAP-Rule:MF_00300};; EC=4.2.3.5 {ECO:0000256|HAMAP-Rule:MF_00300};; 5-enolpyruvylshikimate-3-phosphate phospholyase {ECO:0000256|HAMAP-Rule:MF_00300}; species="Bacteria; Chloroflexi; Caldilineae; Caldilineales; Caldilineaceae; Caldilinea.;" source="Caldilinea aerophila (strain DSM 14535 / JCM 11387 / NBRC 104270 /; STL-6-O1).;"
Chorismate synthase Tax=Caldilinea aerophila (strain DSM 14535 / JCM 11387 / NBRC 104270 / STL-6-O1) RepID=I0I0I5_CALAS
aroC; chorismate synthase
PLM3_127_b2_sep16_scaffold_5077_12
GWF2_Lentisphaerae_57_35_curated, Lentisphaerae, Bacteria

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9148..9672
DNA (525bp) protein (175aa)
Shikimate kinase/3-dehydroquinate synthase bin=GWF2_Lentisphaerae_57_35 species=Caldilinea aerophila genus=Caldilinea taxon_order=Caldilineales taxon_class=Caldilineae phylum=Chloroflexi tax=GWF2_Lentisphaerae_57_35 organism_group=Lentisphaerae organism_desc=a459
aroK_aroB; shikimate kinase
Tax=GWF2_Lentisphaerae_57_35_curated
PLM3_127_b2_sep16_scaffold_5077_13
Caldilinea aerophila, Caldilinea, Caldilineales, Caldilineae, Chloroflexi, Bacteria

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9847..10950
DNA (1104bp) protein (368aa)
Shikimate kinase/3-dehydroquinate synthase Tax=cellular organisms RepID=I0I0I3_CALAS
aroK_aroB; shikimate kinase
Shikimate kinase/3-dehydroquinate synthase {ECO:0000313|EMBL:BAL98770.1}; species="Bacteria; Chloroflexi; Caldilineae; Caldilineales; Caldilineaceae; Caldilinea.;" source="Caldilinea aerophila (strain DSM 14535 / JCM 11387 / NBRC 104270 /; STL-6-O1).;"
PLM3_127_b2_sep16_scaffold_5077_14
CSP1_3_Armatimonadetes, Armatimonadetes, Bacteria

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11031..11597
DNA (567bp) protein (189aa)
NUDIX hydrolase; K01515 ADP-ribose pyrophosphatase [EC:3.6.1.13] bin=bin9_gal15 species=Moorella thermoacetica genus=Moorella taxon_order=Thermoanaerobacterales taxon_class=Clostridia phylum=Firmicutes tax=bin9_gal15 organism_group=GAL15
NUDIX hydrolase
Tax=CSP1_3_Armatimonadetes
PLM3_127_b2_sep16_scaffold_5077_15
bacterium UASB270, Bacteria

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11732..12358
DNA (627bp) protein (209aa)
G-D-S-L family lipolytic protein Tax=SAR324 cluster bacterium JCVI-SC AAA005 RepID=UPI0002629225
Lipolytic enzyme, G-D-S-L {ECO:0000313|EMBL:GAK57375.1}; species="Bacteria.;" source="bacterium UASB270.;"
lipolytic protein G-D-S-L family
PLM3_127_b2_sep16_scaffold_5077_16
Caldilinea aerophila, Caldilinea, Caldilineales, Caldilineae, Chloroflexi, Bacteria

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12523..12837
DNA (315bp) protein (105aa)
3-dehydroquinate dehydratase {ECO:0000256|HAMAP-Rule:MF_00169, ECO:0000256|SAAS:SAAS00027752}; Short=3-dehydroquinase {ECO:0000256|HAMAP-Rule:MF_00169};; EC=4.2.1.10 {ECO:0000256|HAMAP-Rule:MF_00169, ECO:0000256|SAAS:SAAS00027752};; Type II DHQase {ECO:0000256|HAMAP-Rule:MF_00169}; species="Bacteria; Chloroflexi; Caldilineae; Caldilineales; Caldilineaceae; Caldilinea.;" source="Caldilinea aerophila (strain DSM 14535 / JCM 11387 / NBRC 104270 /; STL-6-O1).;"
3-dehydroquinate dehydratase Tax=Caldilinea aerophila (strain DSM 14535 / JCM 11387 / NBRC 104270 / STL-6-O1) RepID=I0I6V1_CALAS
aroQ; 3-dehydroquinate dehydratase
PLM3_127_b2_sep16_scaffold_5077_17
Aptenodytes forsteri, Aptenodytes, Sphenisciformes, Aves, Chordata, Metazoa

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comp(12911..13435)
DNA (525bp) protein (175aa)
PREDICTED: mediator of DNA damage checkpoint protein 1-like isoform X2 Tax=Oreochromis niloticus RepID=UPI0003944E0F
Caldesmon {ECO:0000313|EMBL:KFM07326.1}; Flags: Fragment;; species="Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; Coelurosauria; Aves; Neognathae; Sphenisciformes; Spheniscidae; Aptenodytes.;" source="Aptenodytes forsteri (Emperor penguin).;"
PLM3_127_b2_sep16_scaffold_5077_18
unknown

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comp(13435..14007)
DNA (573bp) protein (191aa)

This feature has no annotations

Displaying 18 items

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