ggKbase home page

PLM3_127_b2_sep16_scaffold_5590

Search features with annotation key words

Displaying 17 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
PLM3_127_b2_sep16_scaffold_5590_1
Leptolyngbya sp. PCC 7375, Leptolyngbya, Oscillatoriales, Oscillatoriophycideae, Cyanobacteria, Bacteria

Not on your lists

comp(3..182)
DNA (180bp) protein (60aa)
Uncharacterized protein Tax=Leptolyngbya sp. PCC 7375 RepID=K9F9C4_9CYAN
Uncharacterized protein {ECO:0000313|EMBL:EKU97915.1}; species="Bacteria; Cyanobacteria; Oscillatoriophycideae; Oscillatoriales; Leptolyngbya.;" source="Leptolyngbya sp. PCC 7375.;"
PLM3_127_b2_sep16_scaffold_5590_2
Methylobacterium extorquens, Methylobacterium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(389..1771)
DNA (1383bp) protein (461aa)
Putative Radical SAM domain protein Tax=Methylobacterium extorquens (strain ATCC 14718 / DSM 1338 / AM1) RepID=C5ATM9_METEA
radical SAM protein
Putative Radical SAM domain protein {ECO:0000313|EMBL:ACS40553.1}; species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Methylobacteriaceae; Methylobacterium.;" source="Methylobacterium extorquens (strain ATCC 14718 / DSM 1338 / AM1).;"
PLM3_127_b2_sep16_scaffold_5590_3
Candidatus Accumulibacter sp. SK-01, Candidatus Accumulibacter, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(2013..3017)
DNA (1005bp) protein (335aa)
Integron integrase Tax=Nitrosococcus watsoni (strain C-113) RepID=D8K854_NITWC
Tyrosine recombinase XerD {ECO:0000313|EMBL:KFB68116.1}; species="Bacteria; Proteobacteria; Betaproteobacteria; Candidatus Accumulibacter.;" source="Candidatus Accumulibacter sp. SK-01.;"
integron integrase
PLM3_127_b2_sep16_scaffold_5590_4
Candidatus Entotheonella sp. TSY2, Candidatus Entotheonella, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(3163..4710)
DNA (1548bp) protein (516aa)
Drug resistance transporter, EmrB/QacA subfamily Tax=Desulfovibrio sp. X2 RepID=S7TL36_9DELT
Uncharacterized protein {ECO:0000313|EMBL:ETX05000.1}; species="Bacteria; Proteobacteria; Deltaproteobacteria; Candidatus Entotheonella.;" source="Candidatus Entotheonella sp. TSY2.;"
EmrB/QacA subfamily drug resistance transporter
PLM3_127_b2_sep16_scaffold_5590_5
Candidatus Entotheonella sp. TSY1, Candidatus Entotheonella, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

4803..5702
DNA (900bp) protein (300aa)
Uncharacterized protein {ECO:0000313|EMBL:ETX02816.1}; species="Bacteria; Proteobacteria; Deltaproteobacteria; Candidatus Entotheonella.;" source="Candidatus Entotheonella sp. TSY1.;"
ABC-3 protein bin=GWF2_Planctomycetes_50_10 species=ACD18 genus=ACD18 taxon_order=ACD18 taxon_class=ACD18 phylum=OD1 tax=GWF2_Planctomycetes_50_10 organism_group=Planctomycetes
ABC transporter
PLM3_127_b2_sep16_scaffold_5590_6
RIFOXYA2_FULL_Deltaproteobacteria_55_11_curated, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

5856..6485
DNA (630bp) protein (210aa)
MotA/TolQ/ExbB proton channel Tax=Candidatus Methylomirabilis oxyfera RepID=D5MGT2_9BACT
motA/TolQ/ExbB proton channel
Tax=RIFOXYA2_FULL_Deltaproteobacteria_55_11_curated
PLM3_127_b2_sep16_scaffold_5590_7
Candidatus Methylomirabilis oxyfera, Candidatus Methylomirabilis, Bacteria

Not on your lists

6488..6904
DNA (417bp) protein (139aa)
Biopolymer transport protein ExbD/TolR Tax=Candidatus Methylomirabilis oxyfera RepID=D5MGT3_9BACT
biopolymer transport protein ExbD/TolR
Biopolymer transport protein ExbD/TolR {ECO:0000313|EMBL:CBE68964.1}; species="Bacteria; candidate division NC10; Candidatus Methylomirabilis.;" source="Candidatus Methylomirabilis oxyfera.;"
PLM3_127_b2_sep16_scaffold_5590_8
unknown

Not on your lists

7326..7565
DNA (240bp) protein (80aa)

This feature has no annotations

PLM3_127_b2_sep16_scaffold_5590_9
RIFOXYA2_FULL_Deltaproteobacteria_55_11_curated, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

7700..7855
DNA (156bp) protein (52aa)
Protein containing TonB Tax=mine drainage metagenome RepID=T0ZK03_9ZZZZ
Protein tonB2
Tax=RIFOXYA2_FULL_Deltaproteobacteria_55_11_curated
PLM3_127_b2_sep16_scaffold_5590_10
RIFCSPLOWO2_12_FULL_Acidobacteria_60_22_curated, Acidobacteria, Bacteria

Not on your lists

comp(7858..8406)
DNA (549bp) protein (183aa)
Tfp pilus assembly protein PilF Tax=Chloracidobacterium thermophilum (strain B) RepID=G2LJX6_CHLTF
Tfp pilus assembly protein PilF
Tax=RIFCSPLOWO2_12_FULL_Acidobacteria_60_22_curated
PLM3_127_b2_sep16_scaffold_5590_11
Candidatus Entotheonella sp. TSY2, Candidatus Entotheonella, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

8513..8914
DNA (402bp) protein (134aa)
Putative uncharacterized protein Tax=Colletotrichum graminicola (strain M1.001 / M2 / FGSC 10212) RepID=E3Q5H2_COLGM
Uncharacterized protein {ECO:0000313|EMBL:ETW92279.1}; species="Bacteria; Proteobacteria; Deltaproteobacteria; Candidatus Entotheonella.;" source="Candidatus Entotheonella sp. TSY2.;"
serine/threonine protein kinase
PLM3_127_b2_sep16_scaffold_5590_12
Candidatus Entotheonella sp. TSY1, Candidatus Entotheonella, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

9003..9380
DNA (378bp) protein (126aa)
hypothetical protein Tax=SAR202 cluster bacterium SCGC AAA240-N13 RepID=UPI000380CC3D
Uncharacterized protein {ECO:0000313|EMBL:ETX00749.1}; species="Bacteria; Proteobacteria; Deltaproteobacteria; Candidatus Entotheonella.;" source="Candidatus Entotheonella sp. TSY1.;"
hypothetical protein
PLM3_127_b2_sep16_scaffold_5590_13
GWD2_Deltaproteobacteria_55_8_curated, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(9479..9970)
DNA (492bp) protein (164aa)
Putative NUDIX domain protein Tax=uncultured marine microorganism HF4000_ANIW93N21 RepID=B3T336_9ZZZZ
NUDIX hydrolase
Tax=GWD2_Deltaproteobacteria_55_8_curated
PLM3_127_b2_sep16_scaffold_5590_14
GWA2_Rokubacteria_70_23_curated, Rokubacteria, Bacteria

Not on your lists

comp(10041..11456)
DNA (1416bp) protein (472aa)
dihydropyrimidinase (EC:3.5.2.2)
Dihydropyrimidinase bin=GWC2_Methylomirabilis_70_24 species=Pseudonocardia dioxanivorans genus=Pseudonocardia taxon_order=Actinomycetales taxon_class=Actinobacteria phylum=Actinobacteria tax=GWC2_Methylomirabilis_70_24 organism_group=NC10 organism_desc=Good
Tax=GWA2_Rokubacteria_70_23_curated
PLM3_127_b2_sep16_scaffold_5590_15
Candidatus Entotheonella sp. TSY2, Candidatus Entotheonella, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

11898..12962
DNA (1065bp) protein (355aa)
hypothetical protein Tax=SAR202 cluster bacterium SCGC AAA240-N13 RepID=UPI00036152A0
Uncharacterized protein {ECO:0000313|EMBL:ETX05856.1}; species="Bacteria; Proteobacteria; Deltaproteobacteria; Candidatus Entotheonella.;" source="Candidatus Entotheonella sp. TSY2.;"
luciferase-like monooxygenase
PLM3_127_b2_sep16_scaffold_5590_16
Candidatus Entotheonella sp. TSY1, Candidatus Entotheonella, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

13057..13239
DNA (183bp) protein (61aa)
Uncharacterized protein {ECO:0000313|EMBL:ETX02313.1}; species="Bacteria; Proteobacteria; Deltaproteobacteria; Candidatus Entotheonella.;" source="Candidatus Entotheonella sp. TSY1.;"
PLM3_127_b2_sep16_scaffold_5590_17
Candidatus Entotheonella sp. TSY1, Candidatus Entotheonella, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists


comp(13548..15134)
DNA (1587bp) protein (529aa)
Valine--tRNA ligase {ECO:0000256|HAMAP-Rule:MF_02004, ECO:0000256|SAAS:SAAS00026840}; EC=6.1.1.9 {ECO:0000256|HAMAP-Rule:MF_02004, ECO:0000256|SAAS:SAAS00105779};; Valyl-tRNA synthetase {ECO:0000256|HAMAP-Rule:MF_02004}; species="Bacteria; Proteobacteria; Deltaproteobacteria; Candidatus Entotheonella.;" source="Candidatus Entotheonella sp. TSY1.;"
valyl-tRNA synthetase (EC:6.1.1.4 6.1.1.9)
Valine--tRNA ligase Tax=Planctomyces brasiliensis (strain ATCC 49424 / DSM 5305 / JCM 21570 / NBRC 103401 / IFAM 1448) RepID=F0SSK2_PLABD
Displaying 17 items

View Taxonomy