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PLM3_127_b2_sep16_scaffold_2543

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Displaying 28 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
PLM3_127_b2_sep16_scaffold_2543_1
R_Acidobacteria_67_28, Acidobacteria, Bacteria

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1..618
DNA (618bp) protein (206aa)
Tfp pilus assembly protein PilF Tax=Chloracidobacterium thermophilum (strain B) RepID=G2LJX6_CHLTF
Tfp pilus assembly protein PilF
Tax=RIFCSPHIGHO2_01_FULL_Acidobacteria_67_28_curated
PLM3_127_b2_sep16_scaffold_2543_2
unknown

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comp(510..755)
DNA (246bp) protein (82aa)

This feature has no annotations

PLM3_127_b2_sep16_scaffold_2543_3
Candidatus Entotheonella sp. TSY2, Candidatus Entotheonella, Deltaproteobacteria, Proteobacteria, Bacteria

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815..1486
DNA (672bp) protein (224aa)
Uncharacterized protein Tax=Caldilinea aerophila (strain DSM 14535 / JCM 11387 / NBRC 104270 / STL-6-O1) RepID=I0HZE4_CALAS
Uncharacterized protein {ECO:0000313|EMBL:ETW93597.1}; Flags: Fragment;; species="Bacteria; Proteobacteria; Deltaproteobacteria; Candidatus Entotheonella.;" source="Candidatus Entotheonella sp. TSY2.;"
hypothetical protein
PLM3_127_b2_sep16_scaffold_2543_4
Candidatus Entotheonella sp. TSY1, Candidatus Entotheonella, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(1483..2397)
DNA (915bp) protein (305aa)
Ribonuclease Z {ECO:0000256|HAMAP-Rule:MF_01818}; Short=RNase Z {ECO:0000256|HAMAP-Rule:MF_01818};; EC=3.1.26.11 {ECO:0000256|HAMAP-Rule:MF_01818};; tRNA 3 endonuclease {ECO:0000256|HAMAP-Rule:MF_01818}; tRNase Z {ECO:0000256|HAMAP-Rule:MF_01818}; species="Bacteria; Proteobacteria; Deltaproteobacteria; Candidatus Entotheonella.;" source="Candidatus Entotheonella sp. TSY1.;"
atm:ANT_05010 rnz; ribonuclease Z (EC:3.1.26.11); K00784 ribonuclease Z [EC:3.1.26.11] bin=RBG9 species=RBG9 genus=RBG9 taxon_order=RBG9 taxon_class=RBG9 phylum=Chloroflexi tax=RBG9 organism_group=Chloroflexi
rnz; ribonuclease Z (EC:3.1.26.11)
PLM3_127_b2_sep16_scaffold_2543_5
Candidatus Entotheonella sp. TSY2, Candidatus Entotheonella, Deltaproteobacteria, Proteobacteria, Bacteria

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comp(2405..3568)
DNA (1164bp) protein (388aa)
Glutamate--tRNA ligase {ECO:0000256|HAMAP-Rule:MF_00022}; EC=6.1.1.17 {ECO:0000256|HAMAP-Rule:MF_00022};; Glutamyl-tRNA synthetase {ECO:0000256|HAMAP-Rule:MF_00022}; species="Bacteria; Proteobacteria; Deltaproteobacteria; Candidatus Entotheonella.;" source="Candidatus Entotheonella sp. TSY2.;"
Glutamate--tRNA ligase Tax=uncultured myxobacterium HF0200_05J13 RepID=E7C3K7_9DELT
glutamyl-tRNA synthetase
PLM3_127_b2_sep16_scaffold_2543_6
Candidatus Entotheonella sp. TSY1, Candidatus Entotheonella, Deltaproteobacteria, Proteobacteria, Bacteria

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comp(3747..4286)
DNA (540bp) protein (180aa)
Uncharacterized protein Tax=Sphaerobacter thermophilus (strain DSM 20745 / S 6022) RepID=D1C3G4_SPHTD
Uncharacterized protein {ECO:0000313|EMBL:ETW97972.1}; species="Bacteria; Proteobacteria; Deltaproteobacteria; Candidatus Entotheonella.;" source="Candidatus Entotheonella sp. TSY1.;"
hypothetical protein
PLM3_127_b2_sep16_scaffold_2543_7
Candidatus Entotheonella sp. TSY1, Candidatus Entotheonella, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

4507..5481
DNA (975bp) protein (325aa)
Uncharacterized protein {ECO:0000313|EMBL:ETW99183.1}; species="Bacteria; Proteobacteria; Deltaproteobacteria; Candidatus Entotheonella.;" source="Candidatus Entotheonella sp. TSY1.;"
Polyprenyl synthetase bin=GWC2_Deltaproteobacteria_42_51 species=Geobacter uraniireducens genus=Geobacter taxon_order=Desulfuromonadales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWC2_Deltaproteobacteria_42_51 organism_group=Deltaproteobacteria
poluprenyl synthetase
PLM3_127_b2_sep16_scaffold_2543_8
Candidatus Entotheonella sp. TSY2, Candidatus Entotheonella, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

5506..6147
DNA (642bp) protein (214aa)
Maf-like protein Toce_0738 Tax=Thermosediminibacter oceani (strain ATCC BAA-1034 / DSM 16646 / JW/IW-1228P) RepID=D9S277_THEOJ
Maf-like protein ETSY2_30555 {ECO:0000256|HAMAP-Rule:MF_00528}; species="Bacteria; Proteobacteria; Deltaproteobacteria; Candidatus Entotheonella.;" source="Candidatus Entotheonella sp. TSY2.;"
maf protein
PLM3_127_b2_sep16_scaffold_2543_9
Candidatus Entotheonella sp. TSY2, Candidatus Entotheonella, Deltaproteobacteria, Proteobacteria, Bacteria

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comp(6110..8158)
DNA (2049bp) protein (683aa)
elongation factor P Tax=Desulfurobacterium sp. TC5-1 RepID=UPI0003B3A885
Elongation factor G {ECO:0000256|HAMAP-Rule:MF_00054}; Short=EF-G {ECO:0000256|HAMAP-Rule:MF_00054};; species="Bacteria; Proteobacteria; Deltaproteobacteria; Candidatus Entotheonella.;" source="Candidatus Entotheonella sp. TSY2.;"
fusA; elongation factor G
PLM3_127_b2_sep16_scaffold_2543_10
Candidatus Entotheonella sp. TSY2, Candidatus Entotheonella, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

8353..9222
DNA (870bp) protein (290aa)
Uncharacterized protein Tax=Smithella sp. ME-1 RepID=V4EPK4_9DELT
Uncharacterized protein {ECO:0000313|EMBL:ETX04133.1}; species="Bacteria; Proteobacteria; Deltaproteobacteria; Candidatus Entotheonella.;" source="Candidatus Entotheonella sp. TSY2.;"
hypothetical protein
PLM3_127_b2_sep16_scaffold_2543_11
R_Acidobacteria_60_20, Acidobacteria, Bacteria

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9576..9896
DNA (321bp) protein (107aa)
hypothetical protein bin=bin7_NC10_sister species=unknown genus=unknown taxon_order=Acidobacteriales taxon_class=Acidobacteriia phylum=Acidobacteria tax=bin7_NC10_sister organism_group=NC10
hypothetical protein
Tax=RIFCSPLOWO2_02_FULL_Acidobacteria_60_20_curated
PLM3_127_b2_sep16_scaffold_2543_12
unknown

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10034..10345
DNA (312bp) protein (104aa)

This feature has no annotations

PLM3_127_b2_sep16_scaffold_2543_13
unknown

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10506..10718
DNA (213bp) protein (71aa)

This feature has no annotations

PLM3_127_b2_sep16_scaffold_2543_14
CSP1_5_NC10, NC10, Bacteria

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comp(10817..11674)
DNA (858bp) protein (286aa)
XRE family transcriptional regulator bin=bin7_NC10_sister species=unknown genus=unknown taxon_order=Acidobacteriales taxon_class=Acidobacteriia phylum=Acidobacteria tax=bin7_NC10_sister organism_group=NC10
XRE family transcriptional regulator
Tax=CSP1_5_NC10
PLM3_127_b2_sep16_scaffold_2543_15
unknown

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11995..12678
DNA (684bp) protein (228aa)

This feature has no annotations

PLM3_127_b2_sep16_scaffold_2543_16
GWA2_Rokubacteria_70_23_curated, Rokubacteria, Bacteria

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12738..14711
DNA (1974bp) protein (658aa)
ftsH; cell division protein FtsH (EC:3.4.24.-)
ATP-dependent zinc metalloprotease FtsH bin=GWC2_Methylomirabilis_70_24 species=Candidatus Methylomirabilis oxyfera genus=Candidatus Methylomirabilis taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWC2_Methylomirabilis_70_24 organism_group=NC10 organism_desc=Good
Tax=GWA2_Rokubacteria_70_23_curated
PLM3_127_b2_sep16_scaffold_2543_17
Blastopirellula marina, Blastopirellula, Planctomycetales, Planctomycetia, Planctomycetes, Bacteria

Not on your lists

14731..15726
DNA (996bp) protein (332aa)
Transglutaminase-like domain protein Tax=Blastopirellula marina DSM 3645 RepID=A4A0Z5_9PLAN
Transglutaminase-like domain protein {ECO:0000313|EMBL:EAQ77562.1}; species="Bacteria; Planctomycetes; Planctomycetia; Planctomycetales; Planctomycetaceae; Blastopirellula.;" source="Blastopirellula marina DSM 3645.;"
transglutaminase
PLM3_127_b2_sep16_scaffold_2543_18
Pseudogulbenkiania ferrooxidans, Pseudogulbenkiania, Neisseriales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

16125..16790
DNA (666bp) protein (222aa)
7-cyano-7-deazaguanine synthase {ECO:0000256|HAMAP-Rule:MF_01633, ECO:0000256|SAAS:SAAS00195886}; EC=6.3.4.20 {ECO:0000256|HAMAP-Rule:MF_01633, ECO:0000256|SAAS:SAAS00029421};; 7-cyano-7-carbaguanine synthase {ECO:0000256|HAMAP-Rule:MF_01633}; PreQ(0) synthase {ECO:0000256|HAMAP-Rule:MF_01633}; Queuosine biosynthesis protein QueC {ECO:0000256|HAMAP-Rule:MF_01633}; species="Bacteria; Proteobacteria; Betaproteobacteria; Neisseriales; Chromobacteriaceae; Pseudogulbenkiania.;" source="Pseudogulbenkiania ferrooxidans 2002.;"
7-cyano-7-deazaguanine synthase Tax=Aquaspirillum serpens RepID=UPI0003B44534
ExsB protein
PLM3_127_b2_sep16_scaffold_2543_19
CSP1_8_Deltaproteobacteria, 43F-1404R, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(16938..17417)
DNA (480bp) protein (160aa)
enoyl-CoA hydratase (EC:4.2.1.17)
enoyl-CoA hydratase/isomerase bin=bin5_DeltaP species=Conexibacter woesei genus=Conexibacter taxon_order=Solirubrobacterales taxon_class=Actinobacteria phylum=Actinobacteria tax=bin5_DeltaP organism_group=Deltaproteobacteria
Tax=CSP1_8_Deltaproteobacteria
PLM3_127_b2_sep16_scaffold_2543_20

Not on your lists

comp(17452..17730)
DNA (279bp) protein (93aa)
Enoyl-CoA hydratase/isomerase Tax=Caulobacter sp. (strain K31) RepID=B0T9N1_CAUSK
Uncharacterized protein {ECO:0000313|EMBL:KKL44501.1}; Flags: Fragment;; species="unclassified sequences; metagenomes; ecological metagenomes.;" source="marine sediment metagenome.;"
enoyl-CoA hydratase/isomerase
PLM3_127_b2_sep16_scaffold_2543_21
Bacillus megaterium, Bacillus, Bacillales, Bacilli, Firmicutes, Bacteria

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comp(17787..18992)
DNA (1206bp) protein (402aa)
Cell division protein FtsZ Tax=Bacillus megaterium RepID=D5DJT1_BACMD
ftsZ; cell division protein FtsZ
Cell division protein FtsZ {ECO:0000256|HAMAP-Rule:MF_00909, ECO:0000256|RuleBase:RU000631}; species="Bacteria; Firmicutes; Bacilli; Bacillales; Bacillaceae; Bacillus.;" source="Bacillus megaterium (strain DSM 319).;"
PLM3_127_b2_sep16_scaffold_2543_22
Candidatus Entotheonella sp. TSY1, Candidatus Entotheonella, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(19020..19550)
DNA (531bp) protein (177aa)
Uncharacterized protein {ECO:0000313|EMBL:ETW95302.1}; species="Bacteria; Proteobacteria; Deltaproteobacteria; Candidatus Entotheonella.;" source="Candidatus Entotheonella sp. TSY1.;"
PLM3_127_b2_sep16_scaffold_2543_23
Candidatus Entotheonella sp. TSY1, Candidatus Entotheonella, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

19797..21050
DNA (1254bp) protein (418aa)
hypothetical protein Tax=Geopsychrobacter electrodiphilus RepID=UPI0003634F38
Uncharacterized protein {ECO:0000313|EMBL:ETW95303.1}; species="Bacteria; Proteobacteria; Deltaproteobacteria; Candidatus Entotheonella.;" source="Candidatus Entotheonella sp. TSY1.;"
amino acid/amide ABC transporter substrate-binding protein, HAAT family
PLM3_127_b2_sep16_scaffold_2543_24
Candidatus Entotheonella sp. TSY2, Candidatus Entotheonella, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

21195..22082
DNA (888bp) protein (296aa)
Uncharacterized protein {ECO:0000313|EMBL:ETX07107.1}; species="Bacteria; Proteobacteria; Deltaproteobacteria; Candidatus Entotheonella.;" source="Candidatus Entotheonella sp. TSY2.;"
Putative permease protein, branched-chain amino acid ABC-type transport system bin=GWC2_Methylomirabilis_70_24 species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWC2_Methylomirabilis_70_24 organism_group=NC10 organism_desc=Good
inner-membrane translocator
PLM3_127_b2_sep16_scaffold_2543_25
Candidatus Entotheonella sp. TSY1, Candidatus Entotheonella, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

22096..23514
DNA (1419bp) protein (473aa)
Uncharacterized protein {ECO:0000313|EMBL:ETW95305.1}; species="Bacteria; Proteobacteria; Deltaproteobacteria; Candidatus Entotheonella.;" source="Candidatus Entotheonella sp. TSY1.;"
Branched-chain amino acid transport system / permease component family protein bin=GWA2_Methylomirabilis_73_35 species=Desulfosporosinus sp. OT genus=Desulfosporosinus taxon_order=Clostridiales taxon_class=Clostridia phylum=Firmicutes tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
amino acid/amide ABC transporter membrane protein 2, HAAT family
PLM3_127_b2_sep16_scaffold_2543_26
Candidatus Entotheonella sp. TSY1, Candidatus Entotheonella, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

23524..24264
DNA (741bp) protein (247aa)
Uncharacterized protein {ECO:0000313|EMBL:ETW95306.1}; species="Bacteria; Proteobacteria; Deltaproteobacteria; Candidatus Entotheonella.;" source="Candidatus Entotheonella sp. TSY1.;"
ABC transporter family protein bin=GWC2_Methylomirabilis_70_24 species=Desulfosporosinus sp. OT genus=Desulfosporosinus taxon_order=Clostridiales taxon_class=Clostridia phylum=Firmicutes tax=GWC2_Methylomirabilis_70_24 organism_group=NC10 organism_desc=Good
branched-chain amino acid ABC transporter ATPase
PLM3_127_b2_sep16_scaffold_2543_27
Candidatus Entotheonella sp. TSY2, Candidatus Entotheonella, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

24261..24968
DNA (708bp) protein (236aa)
ABC transporter {ECO:0000313|EMBL:ETX07104.1}; species="Bacteria; Proteobacteria; Deltaproteobacteria; Candidatus Entotheonella.;" source="Candidatus Entotheonella sp. TSY2.;"
Amino acid/amide ABC transporter ATP-binding protein 2, HAAT family bin=GWF2_Methylomirabilis_70_14 species=Desulfomonile tiedjei genus=Desulfomonile taxon_order=Syntrophobacterales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWF2_Methylomirabilis_70_14 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
amino acid/amide ABC transporter ATP-binding protein 2, HAAT family
PLM3_127_b2_sep16_scaffold_2543_28
GWD2_Deltaproteobacteria_55_8_curated, Deltaproteobacteria, Proteobacteria, Bacteria

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24992..25915
DNA (924bp) protein (308aa)
apurinic endonuclease Apn1 (EC:3.1.21.2)
Probable endonuclease 4 bin=GWD2_Deltaproteobacteria_55_8 species=Sphaerobacter thermophilus genus=Sphaerobacter taxon_order=Sphaerobacterales taxon_class=Thermomicrobia phylum=Chloroflexi tax=GWD2_Deltaproteobacteria_55_8 organism_group=Deltaproteobacteria
Tax=GWD2_Deltaproteobacteria_55_8_curated
Displaying 28 items

View Taxonomy