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PLM3_127_b2_sep16_scaffold_2913

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Displaying 23 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
PLM3_127_b2_sep16_scaffold_2913_1
Candidatus Entotheonella sp. TSY2, Candidatus Entotheonella, Deltaproteobacteria, Proteobacteria, Bacteria

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comp(19..528)
DNA (510bp) protein (170aa)
Peptide deformylase {ECO:0000256|HAMAP-Rule:MF_00163, ECO:0000256|RuleBase:RU003335}; Short=PDF {ECO:0000256|HAMAP-Rule:MF_00163};; EC=3.5.1.88 {ECO:0000256|HAMAP-Rule:MF_00163, ECO:0000256|SAAS:SAAS00013131};; Polypeptide deformylase {ECO:0000256|HAMAP-Rule:MF_00163}; species="Bacteria; Proteobacteria; Deltaproteobacteria; Candidatus Entotheonella.;" source="Candidatus Entotheonella sp. TSY2.;"
peptide deformylase (EC:3.5.1.88)
Peptide deformylase bin=GWB2_Nitrospirae_rel_47_37 species=Thermodesulfovibrio yellowstonii genus=Thermodesulfovibrio taxon_order=Nitrospirales taxon_class=Nitrospira phylum=Nitrospirae tax=GWB2_Nitrospirae_rel_47_37 organism_group=Nitrospirae organism_desc=Good + (but may not be Nitrospirae phylum)
PLM3_127_b2_sep16_scaffold_2913_2
Candidatus Entotheonella sp. TSY1, Candidatus Entotheonella, Deltaproteobacteria, Proteobacteria, Bacteria

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comp(668..3118)
DNA (2451bp) protein (817aa)
Primosomal protein N' {ECO:0000256|HAMAP-Rule:MF_00983}; EC=3.6.4.- {ECO:0000256|HAMAP-Rule:MF_00983};; ATP-dependent helicase PriA {ECO:0000256|HAMAP-Rule:MF_00983}; species="Bacteria; Proteobacteria; Deltaproteobacteria; Candidatus Entotheonella.;" source="Candidatus Entotheonella sp. TSY1.;"
Primosomal protein N' (ATP-dependent helicase priA) (Replication factor Y) (EC:3.6.1.-) bin=bin3_NC10 species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=bin3_NC10 organism_group=NC10
primosomal protein N' (EC:3.6.1.-)
PLM3_127_b2_sep16_scaffold_2913_3
Candidatus Entotheonella sp. TSY1, Candidatus Entotheonella, Deltaproteobacteria, Proteobacteria, Bacteria

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comp(3161..3535)
DNA (375bp) protein (125aa)
Uncharacterized protein {ECO:0000313|EMBL:ETW96553.1}; species="Bacteria; Proteobacteria; Deltaproteobacteria; Candidatus Entotheonella.;" source="Candidatus Entotheonella sp. TSY1.;"
Transcriptional regulator, TraR/DksA family bin=GWD2_Deltaproteobacteria_55_8 species=Geobacter lovleyi genus=Geobacter taxon_order=Desulfuromonadales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWD2_Deltaproteobacteria_55_8 organism_group=Deltaproteobacteria
dksA; putative DnaK suppressor protein
PLM3_127_b2_sep16_scaffold_2913_4
Candidatus Entotheonella sp. TSY2, Candidatus Entotheonella, Deltaproteobacteria, Proteobacteria, Bacteria

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4081..4488
DNA (408bp) protein (136aa)
Cobalamin B12-binding domain protein Tax=Desulfarculus baarsii (strain ATCC 33931 / DSM 2075 / VKM B-1802 / 2st14) RepID=E1QFB7_DESB2
Methylmalonyl-CoA mutase {ECO:0000313|EMBL:ETX02185.1}; species="Bacteria; Proteobacteria; Deltaproteobacteria; Candidatus Entotheonella.;" source="Candidatus Entotheonella sp. TSY2.;"
cobalamin B12-binding domain-containing protein
PLM3_127_b2_sep16_scaffold_2913_5
Candidatus Entotheonella sp. TSY2, Candidatus Entotheonella, Deltaproteobacteria, Proteobacteria, Bacteria

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4591..5604
DNA (1014bp) protein (338aa)
UniRef90_B3TCG1 Putative ArgK protein Tax=uncultured marine microorganism HF4000_APKG10K24 RepID=B3TCG1_9ZZZZ bin=RBG2 species=uncultured marine microorganism HF4000_APKG10K24 genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=RBG2 organism_group=Chloroflexi
Uncharacterized protein {ECO:0000313|EMBL:ETX02184.1}; species="Bacteria; Proteobacteria; Deltaproteobacteria; Candidatus Entotheonella.;" source="Candidatus Entotheonella sp. TSY2.;"
lysine arginine ornithine transport system kinase
PLM3_127_b2_sep16_scaffold_2913_6
Candidatus Entotheonella sp. TSY2, Candidatus Entotheonella, Deltaproteobacteria, Proteobacteria, Bacteria

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5595..6866
DNA (1272bp) protein (424aa)
Mmge/prpd family protein Tax=Nitratireductor indicus C115 RepID=K2PTZ6_9RHIZ
Uncharacterized protein {ECO:0000313|EMBL:ETW99094.1}; species="Bacteria; Proteobacteria; Deltaproteobacteria; Candidatus Entotheonella.;" source="Candidatus Entotheonella sp. TSY2.;"
MmgE/PrpD family protein
PLM3_127_b2_sep16_scaffold_2913_7
unknown

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comp(6964..7134)
DNA (171bp) protein (57aa)

This feature has no annotations

PLM3_127_b2_sep16_scaffold_2913_8
unknown

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comp(7131..7643)
DNA (513bp) protein (171aa)

This feature has no annotations

PLM3_127_b2_sep16_scaffold_2913_9
Candidatus Entotheonella sp. TSY1, Candidatus Entotheonella, Deltaproteobacteria, Proteobacteria, Bacteria

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7802..8392
DNA (591bp) protein (197aa)
GCN5-related N-acetyltransferase Tax=Variovorax paradoxus (strain EPS) RepID=E6V7A5_VARPE
Uncharacterized protein {ECO:0000313|EMBL:ETW93743.1}; species="Bacteria; Proteobacteria; Deltaproteobacteria; Candidatus Entotheonella.;" source="Candidatus Entotheonella sp. TSY1.;"
GCN5-like N-acetyltransferaser
PLM3_127_b2_sep16_scaffold_2913_10
Candidatus Entotheonella sp. TSY2, Candidatus Entotheonella, Deltaproteobacteria, Proteobacteria, Bacteria

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comp(8494..9669)
DNA (1176bp) protein (392aa)
Arginine biosynthesis bifunctional protein ArgJ Tax=Anoxybacillus flavithermus (strain DSM 21510 / WK1) RepID=B7GFS0_ANOFW
Arginine biosynthesis bifunctional protein ArgJ {ECO:0000256|HAMAP-Rule:MF_01106}; species="Bacteria; Proteobacteria; Deltaproteobacteria; Candidatus Entotheonella.;" source="Candidatus Entotheonella sp. TSY2.;"
argJ; bifunctional ornithine acetyltransferase/N-acetylglutamate synthase
PLM3_127_b2_sep16_scaffold_2913_11
Candidatus Entotheonella sp. TSY1, Candidatus Entotheonella, Deltaproteobacteria, Proteobacteria, Bacteria

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comp(9697..11100)
DNA (1404bp) protein (468aa)
Aminotransferase class-III Tax=Sphaerobacter thermophilus (strain DSM 20745 / S 6022) RepID=D1C1J7_SPHTD
Taurine--pyruvate aminotransferase {ECO:0000313|EMBL:ETW95572.1}; species="Bacteria; Proteobacteria; Deltaproteobacteria; Candidatus Entotheonella.;" source="Candidatus Entotheonella sp. TSY1.;"
class III aminotransferase
PLM3_127_b2_sep16_scaffold_2913_12
unknown

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11627..11938
DNA (312bp) protein (104aa)

This feature has no annotations

PLM3_127_b2_sep16_scaffold_2913_13
Candidatus Entotheonella sp. TSY1, Candidatus Entotheonella, Deltaproteobacteria, Proteobacteria, Bacteria

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11995..12207
DNA (213bp) protein (71aa)
carbon-monoxide dehydrogenase Tax=Frankia sp. BMG5.12 RepID=UPI0003799097
Uncharacterized protein {ECO:0000313|EMBL:ETW93996.1}; species="Bacteria; Proteobacteria; Deltaproteobacteria; Candidatus Entotheonella.;" source="Candidatus Entotheonella sp. TSY1.;"
molybdopterin dehydrogenase FAD-binding protein
PLM3_127_b2_sep16_scaffold_2913_14
Candidatus Entotheonella sp. TSY2, Candidatus Entotheonella, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

12204..12851
DNA (648bp) protein (216aa)
Uncharacterized protein {ECO:0000313|EMBL:ETX04064.1}; species="Bacteria; Proteobacteria; Deltaproteobacteria; Candidatus Entotheonella.;" source="Candidatus Entotheonella sp. TSY2.;"
molybdopterin dehydrogenase FAD-binding protein
Carbon-monoxide dehydrogenase bin=GWC2_Methylomirabilis_70_16 species=Rhodopseudomonas palustris genus=Rhodopseudomonas taxon_order=Rhizobiales taxon_class=Alphaproteobacteria phylum=Proteobacteria tax=GWC2_Methylomirabilis_70_16 organism_group=NC10
PLM3_127_b2_sep16_scaffold_2913_15
Candidatus Entotheonella sp. TSY1, Candidatus Entotheonella, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(12848..13933)
DNA (1086bp) protein (362aa)
Uncharacterized protein Tax=candidate division ZIXI bacterium RBG-1 RepID=T0MP57_9BACT
Uncharacterized protein {ECO:0000313|EMBL:ETW95573.1}; species="Bacteria; Proteobacteria; Deltaproteobacteria; Candidatus Entotheonella.;" source="Candidatus Entotheonella sp. TSY1.;"
hypothetical protein
PLM3_127_b2_sep16_scaffold_2913_16
R_WOR_2_67_20, WOR-2, Bacteria

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14190..16199
DNA (2010bp) protein (670aa)
radical SAM protein Tax=Candidatus Omnitrophus fodinae SCGC AAA011-A17 RepID=UPI0003B3E204
hypothetical protein
Tax=RIFCSPHIGHO2_02_FULL_WOR_2_67_20_curated
PLM3_127_b2_sep16_scaffold_2913_17

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16424..16702
DNA (279bp) protein (93aa)
Phage SPO1 DNA polymerase-related protein Tax=Caldithrix abyssi DSM 13497 RepID=H1XWX4_9BACT
Marine sediment metagenome DNA, contig: S06H3_L00948 {ECO:0000313|EMBL:GAI15979.1}; Flags: Fragment;; species="unclassified sequences; metagenomes; ecological metagenomes.;" source="marine sediment metagenome.;"
phage SPO1 DNA polymerase-like protein
PLM3_127_b2_sep16_scaffold_2913_18
Candidatus Nitrospira defluvii, Nitrospira, Nitrospirales, Nitrospira, Nitrospirae, Bacteria

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16727..17026
DNA (300bp) protein (100aa)
udgA; uracil-DNA glycosylase (EC:3.2.2.-)
Uracil-DNA glycosylase {ECO:0000313|EMBL:CBK41258.1}; EC=3.2.2.- {ECO:0000313|EMBL:CBK41258.1};; Uracil-DNA glycosylase family 4 {ECO:0000313|EMBL:ACE75664.1}; EC=3.2.2.- {ECO:0000313|EMBL:ACE75664.1};; species="Bacteria; Nitrospirae; Nitrospirales; Nitrospiraceae; Nitrospira.;" source="Candidatus Nitrospira defluvii.;"
Uracil-DNA glycosylase Tax=Candidatus Nitrospira defluvii RepID=B3U4U7_9BACT
PLM3_127_b2_sep16_scaffold_2913_19
Thermobispora bispora, Thermobispora, Actinobacteria, Actinobacteria, Bacteria

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17155..17607
DNA (453bp) protein (151aa)
endonuclease III (EC:4.2.99.18)
Endonuclease III {ECO:0000256|HAMAP-Rule:MF_00942, ECO:0000256|PIRNR:PIRNR001435}; EC=4.2.99.18 {ECO:0000256|HAMAP-Rule:MF_00942, ECO:0000256|PIRNR:PIRNR001435};; DNA-(apurinic or apyrimidinic site) lyase {ECO:0000256|HAMAP-Rule:MF_00942}; species="Bacteria; Actinobacteria; Actinobacteria incertae sedis; Thermobispora.;" source="Thermobispora bispora (strain ATCC 19993 / DSM 43833 / CBS 139.67 /; JCM 10125 / NBRC 14880 / R51).;"
endonuclease III Tax=Actinokineospora enzanensis RepID=UPI0003638ADC
PLM3_127_b2_sep16_scaffold_2913_20
Candidatus Entotheonella sp. TSY1, Candidatus Entotheonella, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

17889..18344
DNA (456bp) protein (152aa)
Uncharacterized protein Tax=Clostridium sp. BL8 RepID=T0PN92_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:ETW94361.1}; species="Bacteria; Proteobacteria; Deltaproteobacteria; Candidatus Entotheonella.;" source="Candidatus Entotheonella sp. TSY1.;"
BFD (2Fe-2S)-binding domain-containing protein
PLM3_127_b2_sep16_scaffold_2913_21
Candidatus Entotheonella sp. TSY1, Candidatus Entotheonella, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

18438..19541
DNA (1104bp) protein (368aa)
Putative ATPase of the MinD/MRP superfamily (Mrp-like)(ATP/GTP-binding protein) Tax=Candidatus Methylomirabilis oxyfera RepID=D5MG63_9BACT
Uncharacterized protein {ECO:0000313|EMBL:ETW94360.1}; species="Bacteria; Proteobacteria; Deltaproteobacteria; Candidatus Entotheonella.;" source="Candidatus Entotheonella sp. TSY1.;"
ATPase of the MinD/MRP superfamily (mrp-like)(ATP/GTP-binding protein)
PLM3_127_b2_sep16_scaffold_2913_22
Candidatus Entotheonella sp. TSY2, Candidatus Entotheonella, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(19600..21201)
DNA (1602bp) protein (534aa)
RNA polymerase sigma factor SigA Tax=Leptospirillum ferrodiazotrophum RepID=C6HYU0_9BACT
RNA polymerase sigma factor RpoD {ECO:0000256|HAMAP-Rule:MF_00963}; Sigma-70 {ECO:0000256|HAMAP-Rule:MF_00963}; species="Bacteria; Proteobacteria; Deltaproteobacteria; Candidatus Entotheonella.;" source="Candidatus Entotheonella sp. TSY2.;"
RNA polymerase sigma70 factor
PLM3_127_b2_sep16_scaffold_2913_23
S_Thermoanaerobacterales_50_218, Thermoanaerobacterales, Clostridia, Firmicutes, Bacteria

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21760..23148
DNA (1389bp) protein (463aa)
2,3-bisphosphoglycerate-independent phosphoglycerate mutase bin=GWC2_Proteo_65_14_Ab886 species=Geobacter sp. genus=Geobacter taxon_order=Desulfuromonadales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWC2_Proteo_65_14_Ab886 organism_group=Deltaproteobacteria
phosphoglycerate mutase
Tax=S_Thermoanaerobacterales_50_218
Displaying 23 items

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