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PLM3_127_b2_sep16_scaffold_2974

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Displaying 27 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
PLM3_127_b2_sep16_scaffold_2974_1
Candidatus Entotheonella sp. TSY1, Candidatus Entotheonella, Deltaproteobacteria, Proteobacteria, Bacteria

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190..852
DNA (663bp) protein (221aa)
Uncharacterized protein Tax=Geobacter daltonii (strain DSM 22248 / JCM 15807 / FRC-32) RepID=B9M7N1_GEODF
Uncharacterized protein {ECO:0000313|EMBL:ETW93605.1}; species="Bacteria; Proteobacteria; Deltaproteobacteria; Candidatus Entotheonella.;" source="Candidatus Entotheonella sp. TSY1.;"
hypothetical protein
PLM3_127_b2_sep16_scaffold_2974_2
Candidatus Entotheonella sp. TSY1, Candidatus Entotheonella, Deltaproteobacteria, Proteobacteria, Bacteria

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comp(1087..1278)
DNA (192bp) protein (64aa)
Uncharacterized protein {ECO:0000313|EMBL:ETX00363.1}; species="Bacteria; Proteobacteria; Deltaproteobacteria; Candidatus Entotheonella.;" source="Candidatus Entotheonella sp. TSY1.;"
PLM3_127_b2_sep16_scaffold_2974_3
Candidatus Entotheonella sp. TSY2, Candidatus Entotheonella, Deltaproteobacteria, Proteobacteria, Bacteria

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comp(1581..2126)
DNA (546bp) protein (182aa)
Shikimate kinase {ECO:0000256|HAMAP-Rule:MF_00109}; Short=SK {ECO:0000256|HAMAP-Rule:MF_00109};; EC=2.7.1.71 {ECO:0000256|HAMAP-Rule:MF_00109};; species="Bacteria; Proteobacteria; Deltaproteobacteria; Candidatus Entotheonella.;" source="Candidatus Entotheonella sp. TSY2.;"
aroKB; shikimate kinase (EC:2.7.1.71 4.2.3.4); K13829 shikimate kinase / 3-dehydroquinate synthase [EC:2.7.1.71 4.2.3.4] bin=PER_GWE2_39_6 species=PER_GWF2_39_17 genus=PER_GWF2_39_17 taxon_order=PER_GWF2_39_17 taxon_class=PER_GWF2_39_17 phylum=PER tax=PER_GWE2_39_6 organism_group=PER (Peregrinibacteria)
aroL; protein AroL (EC:2.7.1.71)
PLM3_127_b2_sep16_scaffold_2974_4
Peregrinibacteria bacterium GW2011_GWA2_33_10, Peregrinibacteria, Bacteria

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comp(2130..3419)
DNA (1290bp) protein (430aa)
3-phosphoshikimate 1-carboxyvinyltransferase; K00800 3-phosphoshikimate 1-carboxyvinyltransferase [EC:2.5.1.19] bin=GWC2_PER_33_13 species=PER_GWC2_33_13 genus=PER_GWC2_33_13 taxon_order=PER_GWC2_33_13 taxon_class=PER_GWC2_33_13 phylum=PER tax=GWC2_PER_33_13 organism_group=PER (Peregrinibacteria) organism_desc=No RuBisCO in this genome
3-phosphoshikimate 1-carboxyvinyltransferase {ECO:0000313|EMBL:KKP36796.1}; species="Bacteria; Peregrinibacteria.;" source="Peregrinibacteria bacterium GW2011_GWA2_33_10.;"
3-phosphoshikimate 1-carboxyvinyltransferase
PLM3_127_b2_sep16_scaffold_2974_5
Candidatus Entotheonella sp. TSY2, Candidatus Entotheonella, Deltaproteobacteria, Proteobacteria, Bacteria

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comp(3435..4304)
DNA (870bp) protein (290aa)
Methylisocitrate lyase (EC:4.1.3.30)
Carboxyvinyl-carboxyphosphonate phosphorylmutase {ECO:0000313|EMBL:ETX05401.1}; Flags: Fragment;; species="Bacteria; Proteobacteria; Deltaproteobacteria; Candidatus Entotheonella.;" source="Candidatus Entotheonella sp. TSY2.;"
Isocitrate lyase and phosphorylmutase bin=GWF2_Methylomirabilis_70_14 species=Tistrella mobilis genus=Tistrella taxon_order=Rhodospirillales taxon_class=Alphaproteobacteria phylum=Proteobacteria tax=GWF2_Methylomirabilis_70_14 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
PLM3_127_b2_sep16_scaffold_2974_6
unknown

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comp(4271..4471)
DNA (201bp) protein (67aa)

This feature has no annotations

PLM3_127_b2_sep16_scaffold_2974_trna_1
unknown

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comp(4548..4622)
DNA (75bp)
transferRNA Arg
PLM3_127_b2_sep16_scaffold_2974_7
Candidatus Entotheonella sp. TSY2, Candidatus Entotheonella, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

4826..5389
DNA (564bp) protein (188aa)
Uncharacterized protein {ECO:0000313|EMBL:ETX05400.1}; species="Bacteria; Proteobacteria; Deltaproteobacteria; Candidatus Entotheonella.;" source="Candidatus Entotheonella sp. TSY2.;"
PLM3_127_b2_sep16_scaffold_2974_8
Candidatus Entotheonella sp. TSY1, Candidatus Entotheonella, Deltaproteobacteria, Proteobacteria, Bacteria

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5399..6412
DNA (1014bp) protein (338aa)
DNA polymerase III, delta subunit Tax=Geobacter uraniireducens (strain Rf4) RepID=A5G675_GEOUR
Uncharacterized protein {ECO:0000313|EMBL:ETX00381.1}; species="Bacteria; Proteobacteria; Deltaproteobacteria; Candidatus Entotheonella.;" source="Candidatus Entotheonella sp. TSY1.;"
DNA polymerase III subunit delta
PLM3_127_b2_sep16_scaffold_2974_9
Candidatus Entotheonella sp. TSY1, Candidatus Entotheonella, Deltaproteobacteria, Proteobacteria, Bacteria

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comp(6399..6677)
DNA (279bp) protein (93aa)
hypothetical protein Tax=Caldibacillus debilis RepID=UPI00036B9658
30S ribosomal protein S20 {ECO:0000256|HAMAP-Rule:MF_00500}; species="Bacteria; Proteobacteria; Deltaproteobacteria; Candidatus Entotheonella.;" source="Candidatus Entotheonella sp. TSY1.;"
30S ribosomal protein S20
PLM3_127_b2_sep16_scaffold_2974_10
Candidatus Entotheonella sp. TSY1, Candidatus Entotheonella, Deltaproteobacteria, Proteobacteria, Bacteria

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6873..7763
DNA (891bp) protein (297aa)
Tyrosine recombinase XerD Tax=Desulforudis audaxviator (strain MP104C) RepID=B1I484_DESAP
Tyrosine recombinase XerC {ECO:0000256|HAMAP-Rule:MF_01808}; species="Bacteria; Proteobacteria; Deltaproteobacteria; Candidatus Entotheonella.;" source="Candidatus Entotheonella sp. TSY1.;"
tyrosine recombinase XerD
PLM3_127_b2_sep16_scaffold_2974_11
Candidatus Entotheonella sp. TSY1, Candidatus Entotheonella, Deltaproteobacteria, Proteobacteria, Bacteria

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7775..10471
DNA (2697bp) protein (899aa)
Glutamate-ammonia-ligase adenylyltransferase {ECO:0000256|SAAS:SAAS00086160}; EC=2.7.7.42 {ECO:0000256|SAAS:SAAS00086164};; Flags: Fragment;; species="Bacteria; Proteobacteria; Deltaproteobacteria; Candidatus Entotheonella.;" source="Candidatus Entotheonella sp. TSY1.;"
[Protein-PII] uridylyltransferase (PII uridylyl-transferase) (Uridylyl-removing enzyme) (UTase) (EC:2.7.7.59)
Bifunctional uridylyltransferase/uridylyl-removing enzyme Tax=Candidatus Methylomirabilis oxyfera RepID=D5MMG6_9BACT
PLM3_127_b2_sep16_scaffold_2974_12
RBG_16_Deltaproteobacteria_49_23_curated, Deltaproteobacteria, Proteobacteria, Bacteria

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10510..11490
DNA (981bp) protein (327aa)
PhoH-related ATPase bin=GWC2_Pelobacter_58_13 species=Pelobacter carbinolicus genus=Pelobacter taxon_order=Desulfuromonadales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWC2_Pelobacter_58_13 organism_group=Deltaproteobacteria organism_desc=Good +
phoL; phoH-like protein
Tax=RBG_16_Deltaproteobacteria_49_23_curated
PLM3_127_b2_sep16_scaffold_2974_13
Candidatus Entotheonella sp. TSY1, Candidatus Entotheonella, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

11506..11949
DNA (444bp) protein (148aa)
Endoribonuclease YbeY {ECO:0000256|HAMAP-Rule:MF_00009, ECO:0000256|SAAS:SAAS00023089}; EC=3.1.-.- {ECO:0000256|HAMAP-Rule:MF_00009, ECO:0000256|SAAS:SAAS00023108};; species="Bacteria; Proteobacteria; Deltaproteobacteria; Candidatus Entotheonella.;" source="Candidatus Entotheonella sp. TSY1.;"
Endoribonuclease YbeY Tax=Geobacter metallireducens (strain GS-15 / ATCC 53774 / DSM 7210) RepID=YBEY_GEOMG
hypothetical protein
PLM3_127_b2_sep16_scaffold_2974_14
Candidatus Entotheonella sp. TSY2, Candidatus Entotheonella, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

11981..14677
DNA (2697bp) protein (899aa)
DNA mismatch repair protein MutS {ECO:0000256|HAMAP-Rule:MF_00096, ECO:0000256|SAAS:SAAS00184333}; species="Bacteria; Proteobacteria; Deltaproteobacteria; Candidatus Entotheonella.;" source="Candidatus Entotheonella sp. TSY2.;"
DNA mismatch repair protein MutS bin=GWC2_Pelobacter_58_13 species=Pelobacter carbinolicus genus=Pelobacter taxon_order=Desulfuromonadales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWC2_Pelobacter_58_13 organism_group=Deltaproteobacteria organism_desc=Good +
DNA mismatch repair protein MutS
PLM3_127_b2_sep16_scaffold_2974_15
Rhodopirellula sallentina, Rhodopirellula, Planctomycetales, Planctomycetia, Planctomycetes, Bacteria

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14815..15189
DNA (375bp) protein (125aa)
Integral membrane sensor signal transduction histidine kinase Tax=Solibacter usitatus (strain Ellin6076) RepID=Q01NK2_SOLUE
integral membrane sensor signal transduction histidine kinase
Multi-sensor signal transduction histidine kinase {ECO:0000313|EMBL:EMI57250.1}; species="Bacteria; Planctomycetes; Planctomycetia; Planctomycetales; Planctomycetaceae; Rhodopirellula.;" source="Rhodopirellula sallentina SM41.;"
PLM3_127_b2_sep16_scaffold_2974_16
RBG_13_Deltaproteobacteria_52_11_curated, Deltaproteobacteria, Proteobacteria, Bacteria

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15168..16415
DNA (1248bp) protein (416aa)
UDP-3-O-(3-hydroxymyristoyl) N-acetylglucosamine deacetylase (EC:3.5.1.108)
UDP-3-O-acyl-N-acetylglucosamine deacetylase bin=GWD2_Deltaproteobacteria_55_8 species=Nitrospina gracilis genus=Nitrospina taxon_order=Nitrospinales taxon_class=Nitrospinia phylum=Nitrospinae tax=GWD2_Deltaproteobacteria_55_8 organism_group=Deltaproteobacteria
Tax=RBG_13_Deltaproteobacteria_52_11_curated
PLM3_127_b2_sep16_scaffold_2974_17
Candidatus Entotheonella sp. TSY2, Candidatus Entotheonella, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

16436..16804
DNA (369bp) protein (123aa)
Outer-membrane lipoprotein carrier protein {ECO:0000256|SAAS:SAAS00088851}; Flags: Fragment;; species="Bacteria; Proteobacteria; Deltaproteobacteria; Candidatus Entotheonella.;" source="Candidatus Entotheonella sp. TSY2.;"
Outer-membrane lipoprotein carrier protein bin=GWC2_Deltaproteobacteria_56_8 species=Candidatus Methylomirabilis oxyfera genus=Candidatus Methylomirabilis taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWC2_Deltaproteobacteria_56_8 organism_group=Deltaproteobacteria
outer membrane lipoprotein carrier protein LolA
PLM3_127_b2_sep16_scaffold_2974_18
Candidatus Entotheonella sp. TSY1, Candidatus Entotheonella, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

16752..17144
DNA (393bp) protein (131aa)
Outer-membrane lipoprotein carrier protein {ECO:0000256|SAAS:SAAS00088851}; species="Bacteria; Proteobacteria; Deltaproteobacteria; Candidatus Entotheonella.;" source="Candidatus Entotheonella sp. TSY1.;"
PLM3_127_b2_sep16_scaffold_2974_19
Candidatus Entotheonella sp. TSY1, Candidatus Entotheonella, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

17194..18288
DNA (1095bp) protein (365aa)
Zinc metalloprotease {ECO:0000256|RuleBase:RU362031}; EC=3.4.24.- {ECO:0000256|RuleBase:RU362031};; species="Bacteria; Proteobacteria; Deltaproteobacteria; Candidatus Entotheonella.;" source="Candidatus Entotheonella sp. TSY1.;"
Zinc metalloprotease (EC:3.4.24.-)
Putative Zinc metalloprotease Tax=Candidatus Methylomirabilis oxyfera RepID=D5MJF5_9BACT
PLM3_127_b2_sep16_scaffold_2974_20
BJP_IG2069_Desfulfarculales_53_13, Desulfarculales, Deltaproteobacteria, Proteobacteria, Bacteria

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18471..18938
DNA (468bp) protein (156aa)
Ribosome maturation factor RimP Tax=Dictyoglomus thermophilum (strain ATCC 35947 / DSM 3960 / H-6-12) RepID=RIMP_DICT6
YlxS
Tax=BJP_IG2069_Desfulfarculales_53_13
PLM3_127_b2_sep16_scaffold_2974_21
Candidatus Entotheonella sp. TSY1, Candidatus Entotheonella, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

19001..20245
DNA (1245bp) protein (415aa)
Uncharacterized protein {ECO:0000313|EMBL:ETX00395.1}; Flags: Fragment;; species="Bacteria; Proteobacteria; Deltaproteobacteria; Candidatus Entotheonella.;" source="Candidatus Entotheonella sp. TSY1.;"
Transcription elongation factor NusA bin=GWB2_Proteobacteria_55_19 species=Geobacter sulfurreducens genus=Geobacter taxon_order=Desulfuromonadales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWB2_Proteobacteria_55_19 organism_group=Proteobacteria organism_desc=Good
nusA; transcription elongation factor NusA
PLM3_127_b2_sep16_scaffold_2974_22
Candidatus Entotheonella sp. TSY1, Candidatus Entotheonella, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

20265..20909
DNA (645bp) protein (215aa)
RNA-binding protein YlxRQ, putative Tax=Geobacter sulfurreducens RepID=D7AJ17_GEOSK
Uncharacterized protein {ECO:0000313|EMBL:ETX00406.1}; Flags: Fragment;; species="Bacteria; Proteobacteria; Deltaproteobacteria; Candidatus Entotheonella.;" source="Candidatus Entotheonella sp. TSY1.;"
ylxRQ; RNA-binding protein YlxRQ
PLM3_127_b2_sep16_scaffold_2974_23
Candidatus Entotheonella sp. TSY2, Candidatus Entotheonella, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

20984..23014
DNA (2031bp) protein (677aa)
Translation initiation factor IF-2 Tax=Thermoanaerobacterium saccharolyticum (strain DSM 8691 / JW/SL-YS485) RepID=I3VWD7_THESW
Translation initiation factor IF-2 {ECO:0000256|RuleBase:RU000644}; Flags: Fragment;; species="Bacteria; Proteobacteria; Deltaproteobacteria; Candidatus Entotheonella.;" source="Candidatus Entotheonella sp. TSY2.;"
translation initiation factor IF-2
PLM3_127_b2_sep16_scaffold_2974_24
Candidatus Entotheonella sp. TSY1, Candidatus Entotheonella, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

23047..23328
DNA (282bp) protein (94aa)
Uncharacterized protein {ECO:0000313|EMBL:ETX00404.1}; species="Bacteria; Proteobacteria; Deltaproteobacteria; Candidatus Entotheonella.;" source="Candidatus Entotheonella sp. TSY1.;"
Uncharacterized protein bin=GWC2_Deltaproteobacteria_42_51 species=Desulfomonile tiedjei genus=Desulfomonile taxon_order=Syntrophobacterales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWC2_Deltaproteobacteria_42_51 organism_group=Deltaproteobacteria
hypothetical protein
PLM3_127_b2_sep16_scaffold_2974_25
Candidatus Entotheonella sp. TSY1, Candidatus Entotheonella, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

23335..23718
DNA (384bp) protein (128aa)
hypothetical protein Tax=Desulfurispora thermophila RepID=UPI000382481A
Ribosome-binding factor A {ECO:0000256|HAMAP-Rule:MF_00003, ECO:0000256|SAAS:SAAS00023386}; species="Bacteria; Proteobacteria; Deltaproteobacteria; Candidatus Entotheonella.;" source="Candidatus Entotheonella sp. TSY1.;"
ribosome-binding factor A
PLM3_127_b2_sep16_scaffold_2974_26
Candidatus Entotheonella sp. TSY2, Candidatus Entotheonella, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

23711..24622
DNA (912bp) protein (304aa)
tRNA pseudouridine synthase B {ECO:0000256|HAMAP-Rule:MF_01080}; EC=5.4.99.25 {ECO:0000256|HAMAP-Rule:MF_01080};; tRNA pseudouridine(55) synthase {ECO:0000256|HAMAP-Rule:MF_01080}; tRNA pseudouridylate synthase {ECO:0000256|HAMAP-Rule:MF_01080}; tRNA-uridine isomerase {ECO:0000256|HAMAP-Rule:MF_01080}; species="Bacteria; Proteobacteria; Deltaproteobacteria; Candidatus Entotheonella.;" source="Candidatus Entotheonella sp. TSY2.;"
truB; tRNA pseudouridine synthase B (EC:5.4.99.-)
tRNA pseudouridine synthase B Tax=Candidatus Methylomirabilis oxyfera RepID=D5MKK6_9BACT
Displaying 27 items

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