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PLM3_127_b2_sep16_scaffold_1762

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Displaying 14 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
PLM3_127_b2_sep16_scaffold_1762_1
bacterium UASB270, Bacteria

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comp(2..196)
DNA (195bp) protein (65aa)
Elongation factor Tu Tax=Desulfomonile tiedjei (strain ATCC 49306 / DSM 6799 / DCB-1) RepID=I4CE45_DESTA
Elongation factor Tu {ECO:0000256|HAMAP-Rule:MF_00118, ECO:0000256|RuleBase:RU004061}; Short=EF-Tu {ECO:0000256|HAMAP-Rule:MF_00118};; species="Bacteria.;" source="bacterium UASB270.;"
translation elongation factor 1A (EF-1A/EF-Tu)
PLM3_127_b2_sep16_scaffold_1762_2
Geobacter sulfurreducens, Geobacter, Desulfuromonadales, Deltaproteobacteria, Proteobacteria, Bacteria

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comp(311..2380)
DNA (2070bp) protein (690aa)
Elongation factor G 2 Tax=Geobacter sulfurreducens RepID=EFG2_GEOSL
fusA-3; translation elongation factor G
Elongation factor G 2 {ECO:0000255|HAMAP-Rule:MF_00054}; Short=EF-G 2 {ECO:0000255|HAMAP-Rule:MF_00054};; species="Bacteria; Proteobacteria; Deltaproteobacteria; Desulfuromonadales; Geobacteraceae; Geobacter.;" source="Geobacter sulfurreducens (strain ATCC 51573 / DSM 12127 / PCA).;"
PLM3_127_b2_sep16_scaffold_1762_3
Candidatus Entotheonella sp. TSY1, Candidatus Entotheonella, Deltaproteobacteria, Proteobacteria, Bacteria

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comp(2519..2989)
DNA (471bp) protein (157aa)
30S ribosomal protein S7 Tax=Cystobacter fuscus DSM 2262 RepID=S9NZ42_9DELT
30S ribosomal protein S7 {ECO:0000256|HAMAP-Rule:MF_00480}; species="Bacteria; Proteobacteria; Deltaproteobacteria; Candidatus Entotheonella.;" source="Candidatus Entotheonella sp. TSY1.;"
rpsG; 30S ribosomal protein S7
PLM3_127_b2_sep16_scaffold_1762_4
RBG_13_Deltaproteobacteria_49_15_curated, Deltaproteobacteria, Proteobacteria, Bacteria

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comp(3055..3423)
DNA (369bp) protein (123aa)
30S ribosomal protein S12 Tax=Desulfococcus multivorans DSM 2059 RepID=S7UJI1_DESML
30S ribosomal protein S12
Tax=RBG_13_Deltaproteobacteria_49_15_curated
PLM3_127_b2_sep16_scaffold_1762_5
Candidatus Entotheonella sp. TSY1, Candidatus Entotheonella, Deltaproteobacteria, Proteobacteria, Bacteria

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comp(3482..7660)
DNA (4179bp) protein (1393aa)
DNA-directed RNA polymerase subunit beta' {ECO:0000256|HAMAP-Rule:MF_01322}; Short=RNAP subunit beta' {ECO:0000256|HAMAP-Rule:MF_01322};; EC=2.7.7.6 {ECO:0000256|HAMAP-Rule:MF_01322};; RNA polymerase subunit beta' {ECO:0000256|HAMAP-Rule:MF_01322}; Transcriptase subunit beta' {ECO:0000256|HAMAP-Rule:MF_01322}; species="Bacteria; Proteobacteria; Deltaproteobacteria; Candidatus Entotheonella.;" source="Candidatus Entotheonella sp. TSY1.;"
rpoC; DNA-directed RNA polymerase subunit beta' (EC:2.7.7.6)
DNA-directed RNA polymerase subunit beta' Tax=Nitrospina gracilis 3/211 RepID=M1YXT9_9BACT
PLM3_127_b2_sep16_scaffold_1762_6
RLO_Nitrospinae_39_16, Nitrospinae, Bacteria

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comp(7766..11860)
DNA (4095bp) protein (1365aa)
rpoB; DNA-directed RNA polymerase subunit beta (EC:2.7.7.6)
DNA-directed RNA polymerase subunit beta bin=GWD2_Nitrospirae-related_57_8 species=Candidatus Nitrospira defluvii genus=Nitrospira taxon_order=Nitrospirales taxon_class=Nitrospira phylum=Nitrospirae tax=GWD2_Nitrospirae-related_57_8 organism_group=Nitrospirae organism_desc=Many Proteobacteria hits
Tax=RifCSPlowO2_12_Nitrospinae_39_16_curated
PLM3_127_b2_sep16_scaffold_1762_7
Candidatus Entotheonella sp. TSY1, Candidatus Entotheonella, Deltaproteobacteria, Proteobacteria, Bacteria

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comp(11938..12327)
DNA (390bp) protein (130aa)
50S ribosomal protein L7/L12 Tax=Calditerrivibrio nitroreducens (strain DSM 19672 / NBRC 101217 / Yu37-1) RepID=E4TEZ7_CALNY
50S ribosomal protein L7/L12 {ECO:0000256|HAMAP-Rule:MF_00368}; species="Bacteria; Proteobacteria; Deltaproteobacteria; Candidatus Entotheonella.;" source="Candidatus Entotheonella sp. TSY1.;"
50S ribosomal protein L12
PLM3_127_b2_sep16_scaffold_1762_8
Candidatus Entotheonella sp. TSY2, Candidatus Entotheonella, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists


comp(12369..12938)
DNA (570bp) protein (190aa)
50S ribosomal protein L10 {ECO:0000256|HAMAP-Rule:MF_00362, ECO:0000256|RuleBase:RU003636}; species="Bacteria; Proteobacteria; Deltaproteobacteria; Candidatus Entotheonella.;" source="Candidatus Entotheonella sp. TSY2.;"
rplJ; 50S ribosomal protein L10; K02864 large subunit ribosomal protein L10 bin=GWC2_NOV_55_46 species=Desulfuromonas acetoxidans genus=Desulfuromonas taxon_order=Desulfuromonadales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWC2_NOV_55_46 organism_group=Proteobacteria
50S ribosomal protein L10
PLM3_127_b2_sep16_scaffold_1762_9
Candidatus Entotheonella sp. TSY2, Candidatus Entotheonella, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists


comp(12967..13671)
DNA (705bp) protein (235aa)
50S ribosomal protein L1 Tax=Thermacetogenium phaeum (strain ATCC BAA-254 / DSM 12270 / PB) RepID=K4LII8_THEPS
50S ribosomal protein L1 {ECO:0000256|HAMAP-Rule:MF_01318}; species="Bacteria; Proteobacteria; Deltaproteobacteria; Candidatus Entotheonella.;" source="Candidatus Entotheonella sp. TSY2.;"
rplA; 50S ribosomal protein L1
PLM3_127_b2_sep16_scaffold_1762_10
R_NC10_66_22, NC10, Bacteria

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comp(13704..14129)
DNA (426bp) protein (142aa)
50S ribosomal protein L11 Tax=Pelobacter carbinolicus (strain DSM 2380 / Gra Bd 1) RepID=RL11_PELCD
rplK; 50S ribosomal protein L11
Tax=RIFCSPLOWO2_02_FULL_NC10_66_22_curated
PLM3_127_b2_sep16_scaffold_1762_11
Candidatus Entotheonella sp. TSY1, Candidatus Entotheonella, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(14163..14693)
DNA (531bp) protein (177aa)
Transcription termination/antitermination protein NusG Tax=Pelobacter carbinolicus (strain DSM 2380 / Gra Bd 1) RepID=Q3A6Q9_PELCD
Transcription termination/antitermination protein nusG {ECO:0000256|RuleBase:RU000538}; Flags: Fragment;; species="Bacteria; Proteobacteria; Deltaproteobacteria; Candidatus Entotheonella.;" source="Candidatus Entotheonella sp. TSY1.;"
nusG; transcription elongation factor NusG
PLM3_127_b2_sep16_scaffold_1762_12
unknown

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14908..15144
DNA (237bp) protein (79aa)

This feature has no annotations

PLM3_127_b2_sep16_scaffold_1762_trna_1
unknown

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comp(14966..15039)
DNA (74bp)
transferRNA Trp
PLM3_127_b2_sep16_scaffold_1762_13
RifOxyB12_full_OP3_50_7_curated, Omnitrophica, Bacteria

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comp(15311..15586)
DNA (276bp) protein (92aa)
Elongation factor Tu Tax=Desulfatibacillum alkenivorans (strain AK-01) RepID=B8FET7_DESAA
elongation factor Tu
Tax=RifOxyB12_full_OP3_50_7_curated
Displaying 14 items

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