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PLM3_127_b2_sep16_scaffold_17943

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Displaying 14 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
PLM3_127_b2_sep16_scaffold_17943_1
RBG_16_RIF_WS3X_71_46_curated, RIF-WS3X, Bacteria

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comp(3..662)
DNA (660bp) protein (220aa)
Uncharacterized protein Tax=Caldilinea aerophila (strain DSM 14535 / JCM 11387 / NBRC 104270 / STL-6-O1) RepID=I0HYS5_CALAS bin=16ft_combo_ws3_JS1 species=Caldilinea aerophila genus=Caldilinea taxon_order=Caldilineales taxon_class=Caldilineae phylum=Chloroflexi tax=16ft_combo_ws3_JS1 organism_group=Unknown_CP organism_desc=Cant place firmly withiin either WS3 or JS1. Part of a large Rifle clade
putative membrane protein (DUF2079)
Tax=RBG_16_RIF_WS3X_71_46_curated
PLM3_127_b2_sep16_scaffold_17943_2
RBG_16_RIF_WS3X_71_46_curated, RIF-WS3X, Bacteria

Not on your lists

comp(895..1713)
DNA (819bp) protein (273aa)
Lysophospholipase (EC:3.1.1.23)
Lysophospholipase Tax=gamma proteobacterium HTCC5015 RepID=B5JS86_9GAMM bin=16ft_combo_ws3_JS1 species=gamma proteobacterium HTCC5015 genus=unknown taxon_order=unknown taxon_class=Gammaproteobacteria phylum=Proteobacteria tax=16ft_combo_ws3_JS1 organism_group=Unknown_CP organism_desc=Cant place firmly withiin either WS3 or JS1. Part of a large Rifle clade
Tax=RBG_16_RIF_WS3X_71_46_curated
PLM3_127_b2_sep16_scaffold_17943_3
unknown

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2315..2629
DNA (315bp) protein (105aa)

This feature has no annotations

PLM3_127_b2_sep16_scaffold_17943_4
RBG_16_RIF_WS3X_71_46_curated, RIF-WS3X, Bacteria

Not on your lists

2733..3776
DNA (1044bp) protein (348aa)
Putative dioxygenase Tax=Singulisphaera acidiphila (strain ATCC BAA-1392 / DSM 18658 / VKM B-2454 / MOB10) RepID=L0DAB4_SINAD bin=16ft_combo_ws3_JS1 species=Singulisphaera acidiphila genus=Singulisphaera taxon_order=Planctomycetales taxon_class=Planctomycetia phylum=Planctomycetes tax=16ft_combo_ws3_JS1 organism_group=Unknown_CP organism_desc=Cant place firmly withiin either WS3 or JS1. Part of a large Rifle clade
hypothetical protein
Tax=RBG_16_RIF_WS3X_71_46_curated
PLM3_127_b2_sep16_scaffold_17943_5
RBG_16_RIF_WS3X_71_46_curated, RIF-WS3X, Bacteria

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4408..5481
DNA (1074bp) protein (358aa)
Uncharacterized protein Tax=Saccharopolyspora erythraea (strain NRRL 23338) RepID=A4FA91_SACEN bin=16ft_combo_ws3_JS1 species=Saccharopolyspora erythraea genus=Saccharopolyspora taxon_order=Actinomycetales taxon_class=Actinobacteria phylum=Actinobacteria tax=16ft_combo_ws3_JS1 organism_group=Unknown_CP organism_desc=Cant place firmly withiin either WS3 or JS1. Part of a large Rifle clade
glycosyl hydrolase BNR repeat-containing glycosyl hydrolase
Tax=RBG_16_RIF_WS3X_71_46_curated
PLM3_127_b2_sep16_scaffold_17943_6
RBG_16_RIF_WS3X_71_46_curated, RIF-WS3X, Bacteria

Not on your lists

5502..5786
DNA (285bp) protein (95aa)
ThiamineS protein Tax=Thermobispora bispora (strain ATCC 19993 / DSM 43833 / CBS 139.67 / JCM 10125 / NBRC 14880 / R51) RepID=D6Y928_THEBD bin=16ft_combo_ws3_JS1 species=Thermobispora bispora genus=Thermobispora taxon_order=Actinomycetales taxon_class=Actinobacteria phylum=Actinobacteria tax=16ft_combo_ws3_JS1 organism_group=Unknown_CP organism_desc=Cant place firmly withiin either WS3 or JS1. Part of a large Rifle clade
sulfur carrier protein ThiS
Tax=RBG_16_RIF_WS3X_71_46_curated
PLM3_127_b2_sep16_scaffold_17943_7
R_Nitrospirae_62_14, Nitrospirae, Bacteria

Not on your lists

comp(5822..6358)
DNA (537bp) protein (179aa)
Twitching mobility protein PilT Tax=Candidatus Nitrospira defluvii RepID=D8PIP8_9BACT
pilT2; twitching mobility protein Pilt
Tax=RIFCSPLOWO2_02_FULL_Nitrospirae_62_14_curated
PLM3_127_b2_sep16_scaffold_17943_8
Chromobacterium piscinae, Chromobacterium, Neisseriales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(6851..7804)
DNA (954bp) protein (318aa)
twitching motility protein PilT Tax=Thiobacillus denitrificans RepID=UPI00037867B7
Twitching motility protein PilT {ECO:0000313|EMBL:KIA79861.1}; species="Bacteria; Proteobacteria; Betaproteobacteria; Neisseriales; Chromobacteriaceae; Chromobacterium.;" source="Chromobacterium piscinae.;"
pilus retraction ATPase PilT
PLM3_127_b2_sep16_scaffold_17943_9
CG_Delta_02, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(7857..9401)
DNA (1545bp) protein (515aa)
MSHA biogenesis protein MshE Tax=Thioalkalivibrio thiocyanodenitrificans RepID=UPI00037BD22E
type II secretion system protein E
Tax=CG_Delta_02
PLM3_127_b2_sep16_scaffold_17943_10
unknown

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comp(9639..10190)
DNA (552bp) protein (184aa)

This feature has no annotations

PLM3_127_b2_sep16_scaffold_17943_11
unknown

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comp(10271..10573)
DNA (303bp) protein (101aa)

This feature has no annotations

PLM3_127_b2_sep16_scaffold_17943_12
RBG_16_RIF_WS3X_71_46_curated, RIF-WS3X, Bacteria

Not on your lists

comp(10784..11272)
DNA (489bp) protein (163aa)
alias=16ft_combo_ws3_scaffold_19372_16 bin=RBG_19FT_COMBO_CP_WS3-like_JS1_11 species=16ft_combo_ws3 genus=16ft_combo_ws3 taxon_order=16ft_combo_ws3 taxon_class=16ft_combo_ws3 phylum=WS3 tax=RBG_19FT_COMBO_CP_WS3-like_JS1_11 organism_group=Unknown_CP organism_desc=Curation Candidate WS3-like JS1- Novel phyla exclusive to Rifle. 98% similar to 16ft bin
Tax=RBG_16_RIF_WS3X_71_46_curated
PLM3_127_b2_sep16_scaffold_17943_13
RBG_16_RIF_WS3X_71_46_curated, RIF-WS3X, Bacteria

Not on your lists

11698..13713
DNA (2016bp) protein (672aa)
ligA; DNA ligase (NAD(+)) (EC:6.5.1.2); K01972 DNA ligase (NAD+) [EC:6.5.1.2] bin=RBG_19FT_COMBO_CP_WS3-like_JS1_11 species=Candidatus Nitrospira defluvii genus=Nitrospira taxon_order=Nitrospirales taxon_class=Nitrospira phylum=Nitrospirae tax=RBG_19FT_COMBO_CP_WS3-like_JS1_11 organism_group=Unknown_CP organism_desc=Curation Candidate WS3-like JS1- Novel phyla exclusive to Rifle. 98% similar to 16ft bin
ligA; DNA ligase (NAD(+)) (EC:6.5.1.2)
Tax=RBG_16_RIF_WS3X_71_46_curated
PLM3_127_b2_sep16_scaffold_17943_14
RBG_16_RIF_WS3X_71_46_curated, RIF-WS3X, Bacteria

Not on your lists

13784..14680
DNA (897bp) protein (299aa)
Putative DNA-directed DNA polymerase, family X, modulated with phosphoesterase domain Tax=Candidatus Nitrospira defluvii RepID=D8PJE6_9BACT bin=16ft_combo_ws3_JS1 species=Candidatus Nitrospira defluvii genus=Nitrospira taxon_order=Nitrospirales taxon_class=Nitrospira phylum=Nitrospirae tax=16ft_combo_ws3_JS1 organism_group=Unknown_CP organism_desc=Cant place firmly withiin either WS3 or JS1. Part of a large Rifle clade
DNA polymerase III
Tax=RBG_16_RIF_WS3X_71_46_curated
Displaying 14 items

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