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PLM3_127_b2_sep16_scaffold_13905

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Displaying 21 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
PLM3_127_b2_sep16_scaffold_13905_1
Microbacterium testaceum, Microbacterium, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

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656..1036
DNA (381bp) protein (127aa)
multidrug ABC transporter ATPase Tax=Microbacterium sp. B19 RepID=UPI000348D340
Na+ ABC transporter ATPase
ABC-type Na+ transport system, ATPase component {ECO:0000313|EMBL:BAJ73752.1}; species="Bacteria; Actinobacteria; Micrococcales; Microbacteriaceae; Microbacterium.;" source="Microbacterium testaceum (strain StLB037).;"
PLM3_127_b2_sep16_scaffold_13905_2
Cystobacter violaceus, Cystobacter, Myxococcales, Deltaproteobacteria, Proteobacteria, Bacteria

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1033..1743
DNA (711bp) protein (237aa)
Uncharacterized protein {ECO:0000313|EMBL:KFA91964.1}; species="Bacteria; Proteobacteria; Deltaproteobacteria; Myxococcales; Cystobacterineae; Cystobacteraceae; Cystobacter.;" source="Cystobacter violaceus Cb vi76.;"
PLM3_127_b2_sep16_scaffold_13905_3
Cystobacter violaceus, Cystobacter, Myxococcales, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

1730..2287
DNA (558bp) protein (186aa)
Histidine ammonia-lyase protein Tax=Salinisphaera shabanensis E1L3A RepID=U2FU16_9GAMM
Uncharacterized protein {ECO:0000313|EMBL:KFA91963.1}; species="Bacteria; Proteobacteria; Deltaproteobacteria; Myxococcales; Cystobacterineae; Cystobacteraceae; Cystobacter.;" source="Cystobacter violaceus Cb vi76.;"
putative thioredoxin
PLM3_127_b2_sep16_scaffold_13905_4
RBG_16_RIF_WS3X_71_46_curated, RIF-WS3X, Bacteria

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comp(2284..2823)
DNA (540bp) protein (180aa)
alpha/beta hydrolase fold protein bin=RBG_19FT_COMBO_CP_WS3-like_JS1_11 species=unknown genus=Alkalilimnicola taxon_order=Chromatiales taxon_class=Gammaproteobacteria phylum=Proteobacteria tax=RBG_19FT_COMBO_CP_WS3-like_JS1_11 organism_group=Unknown_CP organism_desc=Curation Candidate WS3-like JS1- Novel phyla exclusive to Rifle. 98% similar to 16ft bin
Tax=RBG_16_RIF_WS3X_71_46_curated
PLM3_127_b2_sep16_scaffold_13905_5
RBG_16_RIF_WS3X_71_46_curated, RIF-WS3X, Bacteria

Not on your lists

comp(2790..3917)
DNA (1128bp) protein (376aa)
Putative enzyme with alpha/beta-hydrolase domain; putative triacylglycerol lipase (Esterase) Tax=Bradyrhizobium sp. (strain ORS278) RepID=A4YW76_BRASO bin=16ft_combo_ws3_JS1 species=Bradyrhizobium sp. genus=Bradyrhizobium taxon_order=Rhizobiales taxon_class=Alphaproteobacteria phylum=Proteobacteria tax=16ft_combo_ws3_JS1 organism_group=Unknown_CP organism_desc=Cant place firmly withiin either WS3 or JS1. Part of a large Rifle clade
alpha/beta hydrolase
Tax=RBG_16_RIF_WS3X_71_46_curated
PLM3_127_b2_sep16_scaffold_13905_6
RBG_16_RIF_WS3X_71_46_curated, RIF-WS3X, Bacteria

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4458..5900
DNA (1443bp) protein (481aa)
Uncharacterized protein Tax=Acyrthosiphon pisum RepID=J9JRB6_ACYPI bin=16ft_combo_ws3_JS1 species=Acyrthosiphon pisum genus=Acyrthosiphon taxon_order=Hemiptera taxon_class=Insecta phylum=Arthropoda tax=16ft_combo_ws3_JS1 organism_group=Unknown_CP organism_desc=Cant place firmly withiin either WS3 or JS1. Part of a large Rifle clade
Tax=RBG_16_RIF_WS3X_71_46_curated
PLM3_127_b2_sep16_scaffold_13905_7
RBG_16_RIF_WS3X_71_46_curated, RIF-WS3X, Bacteria

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5963..6217
DNA (255bp) protein (85aa)
alias=16ft_combo_ws3_scaffold_10219_12 bin=RBG_19FT_COMBO_CP_WS3-like_JS1_11 species=16ft_combo_ws3 genus=16ft_combo_ws3 taxon_order=16ft_combo_ws3 taxon_class=16ft_combo_ws3 phylum=WS3 tax=RBG_19FT_COMBO_CP_WS3-like_JS1_11 organism_group=Unknown_CP organism_desc=Curation Candidate WS3-like JS1- Novel phyla exclusive to Rifle. 98% similar to 16ft bin
Tax=RBG_16_RIF_WS3X_71_46_curated
PLM3_127_b2_sep16_scaffold_13905_8
GWA2_Ignavibacteria_54_16_curated, Ignavibacteriales, Ignavibacteria, Ignavibacteriae, Bacteria

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6252..6659
DNA (408bp) protein (136aa)
hypothetical protein bin=RBG1 species=RBG1 genus=RBG1 taxon_order=RBG1 taxon_class=RBG1 phylum=Zixibacteria tax=RBG1 organism_group=Zixibacteria
hypothetical protein
Tax=GWA2_Ignavibacteria_54_16_curated
PLM3_127_b2_sep16_scaffold_13905_9
RBG_16_RIF_WS3X_71_46_curated, RIF-WS3X, Bacteria

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6659..8065
DNA (1407bp) protein (469aa)
DNA polymerase IV Tax=Nitrospina gracilis 3/211 RepID=M1Z9H3_9BACT bin=16ft_combo_ws3_JS1 species=Nitrospina gracilis genus=Nitrospina taxon_order=Nitrospinales taxon_class=Nitrospinia phylum=Nitrospinae tax=16ft_combo_ws3_JS1 organism_group=Unknown_CP organism_desc=Cant place firmly withiin either WS3 or JS1. Part of a large Rifle clade
hypothetical protein
Tax=RBG_16_RIF_WS3X_71_46_curated
PLM3_127_b2_sep16_scaffold_13905_10
Hyalangium minutum, Hyalangium, Myxococcales, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

8088..8459
DNA (372bp) protein (124aa)
bleomycin resistance protein Tax=Nevskia ramosa RepID=UPI0003B77CCF
Uncharacterized protein {ECO:0000313|EMBL:KFE60804.1}; species="Bacteria; Proteobacteria; Deltaproteobacteria; Myxococcales; Cystobacterineae; Cystobacteraceae; Hyalangium.;" source="Hyalangium minutum.;"
hypothetical protein
PLM3_127_b2_sep16_scaffold_13905_11
RBG_16_RIF_WS3X_71_46_curated, RIF-WS3X, Bacteria

Not on your lists

8618..9298
DNA (681bp) protein (227aa)
id=5223181 bin=16ft_combo_ws3_JS1 species=16ft_combo_ws3 genus=16ft_combo_ws3 taxon_order=16ft_combo_ws3 taxon_class=16ft_combo_ws3 phylum=WS3 tax=16ft_combo_ws3_JS1 organism_group=Unknown_CP organism_desc=Cant place firmly withiin either WS3 or JS1. Part of a large Rifle clade
Tax=RBG_16_RIF_WS3X_71_46_curated
PLM3_127_b2_sep16_scaffold_13905_12
RBG_16_Betaproteobacteria_64_18_curated, Betaproteobacteria, Proteobacteria, Bacteria

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comp(9295..9756)
DNA (462bp) protein (154aa)
Thioesterase domain-containing protein bin=GWA2_Methylomirabilis_73_35 species=Caenispirillum salinarum genus=Caenispirillum taxon_order=Rhodospirillales taxon_class=Alphaproteobacteria phylum=Proteobacteria tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
conserved protein of unknown function; thiosterase domain
Tax=RBG_16_Betaproteobacteria_64_18_curated
PLM3_127_b2_sep16_scaffold_13905_13
RBG_16_RIF_WS3X_71_46_curated, RIF-WS3X, Bacteria

Not on your lists

9938..13147
DNA (3210bp) protein (1070aa)
dnaE; DNA polymerase III DnaE (EC:2.7.7.7)
DNA polymerase III catalytic subunit, DnaE type Tax=Moorella thermoacetica (strain ATCC 39073) RepID=Q2RHB7_MOOTA bin=16ft_combo_ws3_JS1 species=Moorella thermoacetica genus=Moorella taxon_order=Thermoanaerobacterales taxon_class=Clostridia phylum=Firmicutes tax=16ft_combo_ws3_JS1 organism_group=Unknown_CP organism_desc=Cant place firmly withiin either WS3 or JS1. Part of a large Rifle clade
Tax=RBG_16_RIF_WS3X_71_46_curated
PLM3_127_b2_sep16_scaffold_13905_14
RBG_16_RIF_WS3X_71_46_curated, RIF-WS3X, Bacteria

Not on your lists

comp(13553..14122)
DNA (570bp) protein (190aa)
metal dependent phosphohydrolase bin=RBG_19FT_COMBO_CP_WS3-like_JS1_11 species=Kyrpidia tusciae genus=Kyrpidia taxon_order=Bacillales taxon_class=Bacilli phylum=Firmicutes tax=RBG_19FT_COMBO_CP_WS3-like_JS1_11 organism_group=Unknown_CP organism_desc=Curation Candidate WS3-like JS1- Novel phyla exclusive to Rifle. 98% similar to 16ft bin
metal dependent phosphohydrolase
Tax=RBG_16_RIF_WS3X_71_46_curated
PLM3_127_b2_sep16_scaffold_13905_15
RBG_16_RIF_WS3X_71_46_curated, RIF-WS3X, Bacteria

Not on your lists

comp(14186..14425)
DNA (240bp) protein (80aa)
4Fe-4S ferredoxin bin=RBG_19FT_COMBO_CP_WS3-like_JS1_11 species=unknown genus=Chloroflexus taxon_order=Chloroflexales taxon_class=Chloroflexi phylum=Chloroflexi tax=RBG_19FT_COMBO_CP_WS3-like_JS1_11 organism_group=Unknown_CP organism_desc=Curation Candidate WS3-like JS1- Novel phyla exclusive to Rifle. 98% similar to 16ft bin
4Fe-4S ferredoxin
Tax=RBG_16_RIF_WS3X_71_46_curated
PLM3_127_b2_sep16_scaffold_13905_16
RBG_13_Acidobacteria_68_16_curated, Acidobacteria, Bacteria

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comp(14494..15141)
DNA (648bp) protein (216aa)
hypothetical protein Tax=Pontibacter roseus RepID=UPI0003718EDD
hypothetical protein
Tax=RBG_13_Acidobacteria_68_16_curated
PLM3_127_b2_sep16_scaffold_13905_17
RBG_16_RIF_WS3X_71_46_curated, RIF-WS3X, Bacteria

Not on your lists

15318..16514
DNA (1197bp) protein (399aa)
RND family efflux transporter, MFP subunit bin=RBG_19FT_COMBO_CP_WS3-like_JS1_11 species=Xanthomonas axonopodis genus=Xanthomonas taxon_order=Xanthomonadales taxon_class=Gammaproteobacteria phylum=Proteobacteria tax=RBG_19FT_COMBO_CP_WS3-like_JS1_11 organism_group=Unknown_CP organism_desc=Curation Candidate WS3-like JS1- Novel phyla exclusive to Rifle. 98% similar to 16ft bin
efflux transporter, RND family, MFP subunit
Tax=RBG_16_RIF_WS3X_71_46_curated
PLM3_127_b2_sep16_scaffold_13905_18
RBG_16_RIF_WS3X_71_46_curated, RIF-WS3X, Bacteria

Not on your lists

16576..17247
DNA (672bp) protein (224aa)
ABC transporter-like protein bin=RBG_19FT_COMBO_CP_WS3-like_JS1_11 species=Syntrophobacter fumaroxidans genus=Syntrophobacter taxon_order=Syntrophobacterales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=RBG_19FT_COMBO_CP_WS3-like_JS1_11 organism_group=Unknown_CP organism_desc=Curation Candidate WS3-like JS1- Novel phyla exclusive to Rifle. 98% similar to 16ft bin
ABC transporter ATPase
Tax=RBG_16_RIF_WS3X_71_46_curated
PLM3_127_b2_sep16_scaffold_13905_19
RBG_16_RIF_WS3X_71_46_curated, RIF-WS3X, Bacteria

Not on your lists

17261..18421
DNA (1161bp) protein (387aa)
hypothetical protein; K02004 putative ABC transport system permease protein bin=RBG_19FT_COMBO_CP_WS3-like_JS1_11 species=Desulfovibrio sp. FW1012B genus=Desulfovibrio taxon_order=Desulfovibrionales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=RBG_19FT_COMBO_CP_WS3-like_JS1_11 organism_group=Unknown_CP organism_desc=Curation Candidate WS3-like JS1- Novel phyla exclusive to Rifle. 98% similar to 16ft bin
MacB-like periplasmic core domain protein
Tax=RBG_16_RIF_WS3X_71_46_curated
PLM3_127_b2_sep16_scaffold_13905_20
RBG_16_RIF_WS3X_71_46_curated, RIF-WS3X, Bacteria

Not on your lists

18651..19526
DNA (876bp) protein (292aa)
Uncharacterized protein Tax=Candidatus Methylomirabilis oxyfera RepID=D5MHN0_9BACT
MacB-like periplasmic core domain protein
Tax=RBG_16_RIF_WS3X_71_46_curated
PLM3_127_b2_sep16_scaffold_13905_21
unknown

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comp(19595..20566)
DNA (972bp) protein (324aa)

This feature has no annotations

Displaying 21 items

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