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PLM3_127_b2_sep16_scaffold_3800

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Displaying 13 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
PLM3_127_b2_sep16_scaffold_3800_1
unknown

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2..94
DNA (93bp) protein (31aa)

This feature has no annotations

PLM3_127_b2_sep16_scaffold_3800_2
GWC2_Geobacteraceae_58_44_curated, Deltaproteobacteria, Proteobacteria, Bacteria

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502..1359
DNA (858bp) protein (286aa)
aba:Acid345_1869 ABC efflux pump, inner membrane subunit; K02004 putative ABC transport system permease protein bin=RBG9 species=RBG9 genus=RBG9 taxon_order=RBG9 taxon_class=RBG9 phylum=Chloroflexi tax=RBG9 organism_group=Chloroflexi
hypothetical protein
Tax=GWC2_Geobacteraceae_58_44_curated
PLM3_127_b2_sep16_scaffold_3800_3
RIFOXYA2_FULL_Deltaproteobacteria_55_11_curated, Deltaproteobacteria, Proteobacteria, Bacteria

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1346..2482
DNA (1137bp) protein (379aa)
Uncharacterized protein bin=GWD2_Deltaproteobacteria_55_8 species=Pelosinus fermentans genus=Pelosinus taxon_order=Selenomonadales taxon_class=Negativicutes phylum=Firmicutes tax=GWD2_Deltaproteobacteria_55_8 organism_group=Deltaproteobacteria
hypothetical protein
Tax=RIFOXYA2_FULL_Deltaproteobacteria_55_11_curated
PLM3_127_b2_sep16_scaffold_3800_4
R_Acidobacteria_61_28, Acidobacteria, Bacteria

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2482..3570
DNA (1089bp) protein (363aa)
Macrolide export ATP-binding/permease protein MacB 1/2 Tax=Treponema azotonutricium ZAS-9 RepID=F5YCI4_TREAZ bin=RBG9 species=Treponema azotonutricium genus=Treponema taxon_order=Spirochaetales taxon_class=Spirochaetia phylum=Spirochaetes tax=RBG9 organism_group=Chloroflexi
GTPase
Tax=RIFCSPLOWO2_02_FULL_Acidobacteria_61_28_curated
PLM3_127_b2_sep16_scaffold_3800_5
RBG_16_RIF_WS3X_71_46_curated, RIF-WS3X, Bacteria

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3638..4468
DNA (831bp) protein (277aa)
Methyltransferase type 11 Tax=Thiothrix nivea DSM 5205 RepID=I3BZQ7_9GAMM bin=16ft_combo_ws3_JS1 species=Thiothrix nivea genus=Thiothrix taxon_order=Thiotrichales taxon_class=Gammaproteobacteria phylum=Proteobacteria tax=16ft_combo_ws3_JS1 organism_group=Unknown_CP organism_desc=Cant place firmly withiin either WS3 or JS1. Part of a large Rifle clade
type 12 methyltransferase
Tax=RBG_16_RIF_WS3X_71_46_curated
PLM3_127_b2_sep16_scaffold_3800_6
RBG_16_Acidobacteria_70_10_curated, Acidobacteria, Bacteria

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4645..5007
DNA (363bp) protein (121aa)
hypothetical protein Tax=Streptomyces sp. CNS615 RepID=UPI000371425C
regulatory protein ArsR
Tax=RBG_16_Acidobacteria_70_10_curated
PLM3_127_b2_sep16_scaffold_3800_7
RBG_16_Acidobacteria_70_10_curated, Acidobacteria, Bacteria

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5004..5786
DNA (783bp) protein (261aa)
Uncharacterized protein Tax=Mycobacterium smegmatis JS623 RepID=L0IYA3_MYCSM
hypothetical protein
Tax=RBG_16_Acidobacteria_70_10_curated
PLM3_127_b2_sep16_scaffold_3800_8
Hyalangium minutum, Hyalangium, Myxococcales, Deltaproteobacteria, Proteobacteria, Bacteria

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comp(5799..6077)
DNA (279bp) protein (93aa)
hypothetical protein Tax=Longispora albida RepID=UPI00036C47AF
Putative integral membrane protein {ECO:0000313|EMBL:KFE70323.1}; species="Bacteria; Proteobacteria; Deltaproteobacteria; Myxococcales; Cystobacterineae; Cystobacteraceae; Hyalangium.;" source="Hyalangium minutum.;"
DoxX protein
PLM3_127_b2_sep16_scaffold_3800_9
Hyalangium minutum, Hyalangium, Myxococcales, Deltaproteobacteria, Proteobacteria, Bacteria

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6457..7401
DNA (945bp) protein (315aa)
Transcriptional regulator, AraC family protein Tax=Cystobacter fuscus DSM 2262 RepID=S9Q5A2_9DELT
Transcriptional regulator, AraC family protein {ECO:0000313|EMBL:KFE70563.1}; species="Bacteria; Proteobacteria; Deltaproteobacteria; Myxococcales; Cystobacterineae; Cystobacteraceae; Hyalangium.;" source="Hyalangium minutum.;"
ykgD; AraC family transcriptional regulator
PLM3_127_b2_sep16_scaffold_3800_10
RBG_16_Zixibacteria_50_21_curated, Zixibacteria, Bacteria

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7527..9158
DNA (1632bp) protein (544aa)
Uncharacterized protein bin=GWF2_Ignavibacteria_35_20 species=Candidatus Methylomirabilis oxyfera genus=Candidatus Methylomirabilis taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWF2_Ignavibacteria_35_20 organism_group=Ignavibacteria
outer membrane protein
Tax=RBG_16_Zixibacteria_50_21_curated
PLM3_127_b2_sep16_scaffold_3800_11
RBG_16_RIF_WS3X_71_46_curated, RIF-WS3X, Bacteria

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9155..10246
DNA (1092bp) protein (364aa)
Putative Multidrug efflux transporter, membrane fusion protein Tax=Candidatus Nitrospira defluvii PF75_9BACT">RepID=D8PF75_9BACT bin=16ft_combo_ws3_JS1 species=Candidatus Nitrospira defluvii genus=Nitrospira taxon_order=Nitrospirales taxon_class=Nitrospira phylum=Nitrospirae tax=16ft_combo_ws3_JS1 organism_group=Unknown_CP organism_desc=Cant place firmly withiin either WS3 or JS1. Part of a large Rifle clade
membrane fusion protein
Tax=RBG_16_RIF_WS3X_71_46_curated
PLM3_127_b2_sep16_scaffold_3800_12
RBG_16_RIF_WS3X_71_46_curated, RIF-WS3X, Bacteria

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10243..12465
DNA (2223bp) protein (741aa)
AcrB/AcrD/AcrF family protein; K03296 hydrophobic/amphiphilic exporter-1 (mainly G- bacteria), HAE1 family bin=RBG_19FT_COMBO_CP_WS3-like_JS1_11 species=Methylococcus capsulatus genus=Methylococcus taxon_order=Methylococcales taxon_class=Gammaproteobacteria phylum=Proteobacteria tax=RBG_19FT_COMBO_CP_WS3-like_JS1_11 organism_group=Unknown_CP organism_desc=Curation Candidate WS3-like JS1- Novel phyla exclusive to Rifle. 98% similar to 16ft bin
AcrB/AcrD/AcrF family protein
Tax=RBG_16_RIF_WS3X_71_46_curated
PLM3_127_b2_sep16_scaffold_3800_13
RBG_16_RIF_WS3X_71_46_curated, RIF-WS3X, Bacteria

Not on your lists

12462..13421
DNA (960bp) protein (320aa)
AcrB/AcrD/AcrF family protein; K03296 hydrophobic/amphiphilic exporter-1 (mainly G- bacteria), HAE1 family bin=RBG_19FT_COMBO_CP_WS3-like_JS1_11 species=Methylococcus capsulatus genus=Methylococcus taxon_order=Methylococcales taxon_class=Gammaproteobacteria phylum=Proteobacteria tax=RBG_19FT_COMBO_CP_WS3-like_JS1_11 organism_group=Unknown_CP organism_desc=Curation Candidate WS3-like JS1- Novel phyla exclusive to Rifle. 98% similar to 16ft bin
AcrB/AcrD/AcrF family protein
Tax=RBG_16_RIF_WS3X_71_46_curated
Displaying 13 items

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