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PLM3_127_b2_sep16_scaffold_4080

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Displaying 16 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
PLM3_127_b2_sep16_scaffold_4080_1
unknown

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1..213
DNA (213bp) protein (71aa)

This feature has no annotations

PLM3_127_b2_sep16_scaffold_4080_2
RBG_16_Zixibacteria_53_22_curated, Zixibacteria, Bacteria

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comp(150..362)
DNA (213bp) protein (71aa)
Alpha amylase catalytic region Tax=Rhodothermus marinus (strain ATCC 43812 / DSM 4252 / R-10) RepID=D0MDJ8_RHOM4
hypothetical protein
Tax=RBG_16_Zixibacteria_53_22_curated
PLM3_127_b2_sep16_scaffold_4080_3
RIFOXYD2_FULL_Sphingobacteria_35_12_curated, Sphingobacteria, Bacteroidetes, Bacteria

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comp(377..1921)
DNA (1545bp) protein (515aa)
Uncharacterized protein Tax=Marinobacter algicola DG893 RepID=A6F564_9ALTE
Tax=RIFOXYD2_FULL_Sphingobacteria_35_12_curated
PLM3_127_b2_sep16_scaffold_4080_4
RIFCSPLOWO2_12_FULL_Acidobacteria_66_21_curated, Acidobacteria, Bacteria

Not on your lists

comp(2442..2894)
DNA (453bp) protein (151aa)
Major facilitator superfamily MFS_1 Tax=Aminomonas paucivorans DSM 12260 RepID=E3CXK0_9BACT
major facilitator superfamily protein
Tax=RIFCSPLOWO2_12_FULL_Acidobacteria_66_21_curated
PLM3_127_b2_sep16_scaffold_4080_5
RBG_16_RIF_WS3X_71_46_curated, RIF-WS3X, Bacteria

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comp(3534..3965)
DNA (432bp) protein (144aa)
hypothetical protein; K07397 putative redox protein bin=RBG_19FT_COMBO_CP_WS3-like_JS1_11 species=Providencia sneebia genus=Providencia taxon_order=Enterobacteriales taxon_class=Gammaproteobacteria phylum=Proteobacteria tax=RBG_19FT_COMBO_CP_WS3-like_JS1_11 organism_group=Unknown_CP organism_desc=Curation Candidate WS3-like JS1- Novel phyla exclusive to Rifle. 98% similar to 16ft bin
OsmC family protein
Tax=RBG_16_RIF_WS3X_71_46_curated
PLM3_127_b2_sep16_scaffold_4080_6
RBG_16_RIF_WS3X_71_46_curated, RIF-WS3X, Bacteria

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comp(3987..5342)
DNA (1356bp) protein (452aa)
NADH dehydrogenase (ubiquinone) (EC:1.6.5.3); K03885 NADH dehydrogenase [EC:1.6.99.3] bin=RBG_19FT_COMBO_CP_WS3-like_JS1_11 species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=RBG_19FT_COMBO_CP_WS3-like_JS1_11 organism_group=Unknown_CP organism_desc=Curation Candidate WS3-like JS1- Novel phyla exclusive to Rifle. 98% similar to 16ft bin
NADH dehydrogenase (ubiquinone) (EC:1.6.5.3)
Tax=RBG_16_RIF_WS3X_71_46_curated
PLM3_127_b2_sep16_scaffold_4080_7
RBG_16_RIF_WS3X_71_46_curated, RIF-WS3X, Bacteria

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5429..6385
DNA (957bp) protein (319aa)
family 2 glycosyl transferase bin=RBG_19FT_COMBO_CP_WS3-like_JS1_11 species=Geobacter sp. genus=Geobacter taxon_order=Desulfuromonadales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=RBG_19FT_COMBO_CP_WS3-like_JS1_11 organism_group=Unknown_CP organism_desc=Curation Candidate WS3-like JS1- Novel phyla exclusive to Rifle. 98% similar to 16ft bin
family 2 glycosyl transferase
Tax=RBG_16_RIF_WS3X_71_46_curated
PLM3_127_b2_sep16_scaffold_4080_8
RBG_16_RIF_WS3X_71_46_curated, RIF-WS3X, Bacteria

Not on your lists

6596..6937
DNA (342bp) protein (114aa)
id=5225325 bin=16ft_combo_ws3_JS1 species=16ft_combo_ws3 genus=16ft_combo_ws3 taxon_order=16ft_combo_ws3 taxon_class=16ft_combo_ws3 phylum=WS3 tax=16ft_combo_ws3_JS1 organism_group=Unknown_CP organism_desc=Cant place firmly withiin either WS3 or JS1. Part of a large Rifle clade
Tax=RBG_16_RIF_WS3X_71_46_curated
PLM3_127_b2_sep16_scaffold_4080_9
CG_Arma_01, Armatimonadetes, Bacteria

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7014..8168
DNA (1155bp) protein (385aa)
Putative glycosyltransferase Tax=Variovorax paradoxus B4 RepID=T1X652_VARPD
putative glycosyltransferase
Tax=CG_Arma_01
PLM3_127_b2_sep16_scaffold_4080_10
unknown

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8137..8463
DNA (327bp) protein (109aa)

This feature has no annotations

PLM3_127_b2_sep16_scaffold_4080_11
RBG_16_RIF_WS3X_71_46_curated, RIF-WS3X, Bacteria

Not on your lists

8501..10585
DNA (2085bp) protein (695aa)
Asparagine synthetase Tax=Singulisphaera acidiphila (strain ATCC BAA-1392 / DSM 18658 / VKM B-2454 / MOB10) RepID=L0DE87_SINAD bin=16ft_combo_ws3_JS1 species=Singulisphaera acidiphila genus=Singulisphaera taxon_order=Planctomycetales taxon_class=Planctomycetia phylum=Planctomycetes tax=16ft_combo_ws3_JS1 organism_group=Unknown_CP organism_desc=Cant place firmly withiin either WS3 or JS1. Part of a large Rifle clade
asparagine synthase
Tax=RBG_16_RIF_WS3X_71_46_curated
PLM3_127_b2_sep16_scaffold_4080_12
RBG_16_RIF_WS3X_71_46_curated, RIF-WS3X, Bacteria

Not on your lists

comp(10625..11818)
DNA (1194bp) protein (398aa)
Arabinose efflux permease Tax=Chloracidobacterium thermophilum (strain B) RepID=G2LIN5_CHLTF bin=16ft_combo_ws3_JS1 species=Candidatus Chloracidobacterium thermophilum genus=Candidatus Chloracidobacterium taxon_order=unknown taxon_class=unknown phylum=Acidobacteria tax=16ft_combo_ws3_JS1 organism_group=Unknown_CP organism_desc=Cant place firmly withiin either WS3 or JS1. Part of a large Rifle clade
arabinose efflux permease
Tax=RBG_16_RIF_WS3X_71_46_curated
PLM3_127_b2_sep16_scaffold_4080_13
RBG_16_RIF_WS3X_71_46_curated, RIF-WS3X, Bacteria

Not on your lists

comp(11868..14333)
DNA (2466bp) protein (822aa)
Multi-sensor hybrid histidine kinase Tax=Desulfatibacillum alkenivorans (strain AK-01) RepID=B8FJD5_DESAA bin=16ft_combo_ws3_JS1 species=Desulfatibacillum alkenivorans genus=Desulfatibacillum taxon_order=Desulfobacterales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=16ft_combo_ws3_JS1 organism_group=Unknown_CP organism_desc=Cant place firmly withiin either WS3 or JS1. Part of a large Rifle clade
PAS domain-containing protein
Tax=RBG_16_RIF_WS3X_71_46_curated
PLM3_127_b2_sep16_scaffold_4080_14
RIFCSPLOWO2_12_FULL_Acidobacteria_67_14b_curated, Acidobacteria, Bacteria

Not on your lists

comp(14785..16449)
DNA (1665bp) protein (555aa)
hypothetical protein Tax=Zavarzinella formosa RepID=UPI000370155E
hypothetical protein
Tax=RIFCSPLOWO2_12_FULL_Acidobacteria_67_14b_curated
PLM3_127_b2_sep16_scaffold_4080_15
RBG_16_RIF_WS3X_71_46_curated, RIF-WS3X, Bacteria

Not on your lists

16680..17258
DNA (579bp) protein (193aa)
alias=16ft_combo_ws3_scaffold_11554_7 bin=RBG_19FT_COMBO_CP_WS3-like_JS1_11 species=16ft_combo_ws3 genus=16ft_combo_ws3 taxon_order=16ft_combo_ws3 taxon_class=16ft_combo_ws3 phylum=WS3 tax=RBG_19FT_COMBO_CP_WS3-like_JS1_11 organism_group=Unknown_CP organism_desc=Curation Candidate WS3-like JS1- Novel phyla exclusive to Rifle. 98% similar to 16ft bin
Tax=RBG_16_RIF_WS3X_71_46_curated
PLM3_127_b2_sep16_scaffold_4080_16
Cupriavidus metallidurans, Cupriavidus, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

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17307..18062
DNA (756bp) protein (252aa)
Putative intramembrane serine protease Tax=Ralstonia metallidurans (strain CH34 / ATCC 43123 / DSM 2839) RepID=Q1LGJ7_RALME
intramembrane serine protease
Putative intramembrane serine protease {ECO:0000313|EMBL:ABF10729.1}; species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Burkholderiaceae; Cupriavidus.;" source="Ralstonia metallidurans (strain CH34 / ATCC 43123 / DSM 2839).;"
Displaying 16 items

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