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PLM3_127_b2_sep16_scaffold_7971

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Displaying 22 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
PLM3_127_b2_sep16_scaffold_7971_1
unknown

Not on your lists

comp(1..225)
DNA (225bp) protein (75aa)

This feature has no annotations

PLM3_127_b2_sep16_scaffold_7971_2
RBG_16_RIF_WS3X_71_46_curated, RIF-WS3X, Bacteria

Not on your lists

comp(222..1679)
DNA (1458bp) protein (486aa)
N-acetylmuramoyl-L-alanine amidase (EC:3.5.1.28); K01448 N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28] bin=RBG_19FT_COMBO_CP_WS3-like_JS1_11 species=Caulobacter sp. AP07 genus=Caulobacter taxon_order=Caulobacterales taxon_class=Alphaproteobacteria phylum=Proteobacteria tax=RBG_19FT_COMBO_CP_WS3-like_JS1_11 organism_group=Unknown_CP organism_desc=Curation Candidate WS3-like JS1- Novel phyla exclusive to Rifle. 98% similar to 16ft bin
cell wall hydrolase/autolysin
Tax=RBG_16_RIF_WS3X_71_46_curated
PLM3_127_b2_sep16_scaffold_7971_3
RBG_16_RIF_WS3X_71_46_curated, RIF-WS3X, Bacteria

Not on your lists

comp(1676..2155)
DNA (480bp) protein (160aa)
SsrA-binding protein bin=RBG_19FT_COMBO_CP_WS3-like_JS1_11 species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=RBG_19FT_COMBO_CP_WS3-like_JS1_11 organism_group=Unknown_CP organism_desc=Curation Candidate WS3-like JS1- Novel phyla exclusive to Rifle. 98% similar to 16ft bin
SsrA-binding protein
Tax=RBG_16_RIF_WS3X_71_46_curated
PLM3_127_b2_sep16_scaffold_7971_trna_1
unknown

Not on your lists

comp(2237..2320)
DNA (84bp)
transferRNA Leu
PLM3_127_b2_sep16_scaffold_7971_4
RIFOXYB2_FULL_Elusimicrobia_50_12_curated, Elusimicrobia, Bacteria

Not on your lists

comp(2392..3129)
DNA (738bp) protein (246aa)
Methyltransferase FkbM Tax=Desulfotignum phosphitoxidans DSM 13687 RepID=S0FWM3_9DELT
methyltransferase FkbM
Tax=RIFOXYB2_FULL_Elusimicrobia_50_12_curated
PLM3_127_b2_sep16_scaffold_7971_5
RBG_16_Zixibacteria_48_11_curated, Zixibacteria, Bacteria

Not on your lists

comp(3173..4207)
DNA (1035bp) protein (345aa)
transketolase ; K00615 transketolase [EC:2.2.1.1] bin=RBG1 species=RBG1 genus=RBG1 taxon_order=RBG1 taxon_class=RBG1 phylum=Zixibacteria tax=RBG1 organism_group=Zixibacteria
transketolase
Tax=RBG_16_Zixibacteria_48_11_curated
PLM3_127_b2_sep16_scaffold_7971_6
RBG_19FT_COMBO_Zixibacteria_42_43_curated, Zixibacteria, Bacteria

Not on your lists

comp(4207..4344)
DNA (138bp) protein (46aa)
Transketolase, N-terminal section bin=RBG1 species=RBG1 genus=RBG1 taxon_order=RBG1 taxon_class=RBG1 phylum=Zixibacteria tax=RBG1 organism_group=Zixibacteria
Tax=RBG_19FT_COMBO_Zixibacteria_42_43_curated
PLM3_127_b2_sep16_scaffold_7971_7
RBG_16_Zixibacteria_53_22_curated, Zixibacteria, Bacteria

Not on your lists

comp(4316..5200)
DNA (885bp) protein (295aa)
Transketolase, N-terminal section bin=RBG1 species=RBG1 genus=RBG1 taxon_order=RBG1 taxon_class=RBG1 phylum=Zixibacteria tax=RBG1 organism_group=Zixibacteria
transketolase domain-containing protein
Tax=RBG_16_Zixibacteria_53_22_curated
PLM3_127_b2_sep16_scaffold_7971_8
RBG_16_RIF_WS3X_71_46_curated, RIF-WS3X, Bacteria

Not on your lists

comp(5306..5947)
DNA (642bp) protein (214aa)
Uncharacterized protein Tax=Methanosaeta concilii (strain ATCC 5969 / DSM 3671 / JCM 10134 / NBRC 103675 / OCM 69 / GP-6) RepID=F4BXX1_METCG bin=16ft_combo_ws3_JS1 species=Methanosaeta concilii genus=Methanosaeta taxon_order=Methanosarcinales taxon_class=Methanomicrobia phylum=Euryarchaeota tax=16ft_combo_ws3_JS1 organism_group=Unknown_CP organism_desc=Cant place firmly withiin either WS3 or JS1. Part of a large Rifle clade
hypothetical protein
Tax=RBG_16_RIF_WS3X_71_46_curated
PLM3_127_b2_sep16_scaffold_7971_9
RLO_PLX_64_10, Bacteria

Not on your lists

comp(6298..7467)
DNA (1170bp) protein (390aa)
aspartate aminotransferase (transaminase a) (aspat) (EC:2.6.1.1) bin=bin7_NC10_sister species=Thermomicrobium roseum genus=Thermomicrobium taxon_order=Thermomicrobiales taxon_class=Thermomicrobia phylum=Chloroflexi tax=bin7_NC10_sister organism_group=NC10
aspartate aminotransferase (transaminase a) (aspat) (EC:2.6.1.1)
Tax=RIFCSPLOWO2_12_FULL_PLX_64_10_curated
PLM3_127_b2_sep16_scaffold_7971_10
RBG_16_RIF_WS3X_71_46_curated, RIF-WS3X, Bacteria

Not on your lists

comp(7493..8929)
DNA (1437bp) protein (479aa)
id=5224246 bin=16ft_combo_ws3_JS1 species=16ft_combo_ws3 genus=16ft_combo_ws3 taxon_order=16ft_combo_ws3 taxon_class=16ft_combo_ws3 phylum=WS3 tax=16ft_combo_ws3_JS1 organism_group=Unknown_CP organism_desc=Cant place firmly withiin either WS3 or JS1. Part of a large Rifle clade
Tax=RBG_16_RIF_WS3X_71_46_curated
PLM3_127_b2_sep16_scaffold_7971_11
RBG_16_RIF_WS3X_71_46_curated, RIF-WS3X, Bacteria

Not on your lists

comp(8926..9735)
DNA (810bp) protein (270aa)
id=5224247 bin=16ft_combo_ws3_JS1 species=16ft_combo_ws3 genus=16ft_combo_ws3 taxon_order=16ft_combo_ws3 taxon_class=16ft_combo_ws3 phylum=WS3 tax=16ft_combo_ws3_JS1 organism_group=Unknown_CP organism_desc=Cant place firmly withiin either WS3 or JS1. Part of a large Rifle clade
Tax=RBG_16_RIF_WS3X_71_46_curated
PLM3_127_b2_sep16_scaffold_7971_12
RBG_16_RIF_WS3X_71_46_curated, RIF-WS3X, Bacteria

Not on your lists

comp(9732..10787)
DNA (1056bp) protein (352aa)
id=5224248 bin=16ft_combo_ws3_JS1 species=16ft_combo_ws3 genus=16ft_combo_ws3 taxon_order=16ft_combo_ws3 taxon_class=16ft_combo_ws3 phylum=WS3 tax=16ft_combo_ws3_JS1 organism_group=Unknown_CP organism_desc=Cant place firmly withiin either WS3 or JS1. Part of a large Rifle clade
Tax=RBG_16_RIF_WS3X_71_46_curated
PLM3_127_b2_sep16_scaffold_7971_13
RBG_16_RIF_WS3X_71_46_curated, RIF-WS3X, Bacteria

Not on your lists

comp(10784..11296)
DNA (513bp) protein (171aa)
id=5224248 bin=16ft_combo_ws3_JS1 species=16ft_combo_ws3 genus=16ft_combo_ws3 taxon_order=16ft_combo_ws3 taxon_class=16ft_combo_ws3 phylum=WS3 tax=16ft_combo_ws3_JS1 organism_group=Unknown_CP organism_desc=Cant place firmly withiin either WS3 or JS1. Part of a large Rifle clade
Tax=RBG_16_RIF_WS3X_71_46_curated
PLM3_127_b2_sep16_scaffold_7971_14
RBG_16_RIF_WS3X_71_46_curated, RIF-WS3X, Bacteria

Not on your lists

comp(11370..13538)
DNA (2169bp) protein (723aa)
UPI00029A418F related cluster Tax=unknown RepID=UPI00029A418F bin=16ft_combo_ws3_JS1 species=unidentified genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=16ft_combo_ws3_JS1 organism_group=Unknown_CP organism_desc=Cant place firmly withiin either WS3 or JS1. Part of a large Rifle clade
hypothetical membrane protein
Tax=RBG_16_RIF_WS3X_71_46_curated
PLM3_127_b2_sep16_scaffold_7971_15
RBG_16_RIF_WS3X_71_46_curated, RIF-WS3X, Bacteria

Not on your lists

comp(13667..14176)
DNA (510bp) protein (170aa)
hypothetical protein bin=RBG_19FT_COMBO_CP_WS3-like_JS1_11 species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=RBG_19FT_COMBO_CP_WS3-like_JS1_11 organism_group=Unknown_CP organism_desc=Curation Candidate WS3-like JS1- Novel phyla exclusive to Rifle. 98% similar to 16ft bin
hypothetical protein
Tax=RBG_16_RIF_WS3X_71_46_curated
PLM3_127_b2_sep16_scaffold_7971_16
RBG_16_RIF_WS3X_71_46_curated, RIF-WS3X, Bacteria

Not on your lists

comp(14173..15090)
DNA (918bp) protein (306aa)
CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase Tax=Azotobacter vinelandii RepID=C1DRV8_AZOVD bin=16ft_combo_ws3_JS1 species=Azotobacter vinelandii genus=Azotobacter taxon_order=Pseudomonadales taxon_class=Gammaproteobacteria phylum=Proteobacteria tax=16ft_combo_ws3_JS1 organism_group=Unknown_CP organism_desc=Cant place firmly withiin either WS3 or JS1. Part of a large Rifle clade
CDP-diacylglycerol/glycerol-3-phosphate 3-phosphatidyltransferase
Tax=RBG_16_RIF_WS3X_71_46_curated
PLM3_127_b2_sep16_scaffold_7971_17
RBG_16_RIF_WS3X_71_46_curated, RIF-WS3X, Bacteria

Not on your lists

15796..17343
DNA (1548bp) protein (516aa)
Discoidin domain protein Tax=Patulibacter sp. I11 RepID=H0E870_9ACTN bin=16ft_combo_ws3_JS1 species=Patulibacter medicamentivorans genus=Patulibacter taxon_order=Solirubrobacterales taxon_class=Actinobacteria phylum=Actinobacteria tax=16ft_combo_ws3_JS1 organism_group=Unknown_CP organism_desc=Cant place firmly withiin either WS3 or JS1. Part of a large Rifle clade
Tax=RBG_16_RIF_WS3X_71_46_curated
PLM3_127_b2_sep16_scaffold_7971_18
RBG_16_RIF_WS3X_71_46_curated, RIF-WS3X, Bacteria

Not on your lists

17340..18053
DNA (714bp) protein (238aa)
id=5223713 bin=16ft_combo_ws3_JS1 species=16ft_combo_ws3 genus=16ft_combo_ws3 taxon_order=16ft_combo_ws3 taxon_class=16ft_combo_ws3 phylum=WS3 tax=16ft_combo_ws3_JS1 organism_group=Unknown_CP organism_desc=Cant place firmly withiin either WS3 or JS1. Part of a large Rifle clade
Tax=RBG_16_RIF_WS3X_71_46_curated
PLM3_127_b2_sep16_scaffold_7971_19
RBG_16_RIF_WS3X_71_46_curated, RIF-WS3X, Bacteria

Not on your lists

comp(18105..18809)
DNA (705bp) protein (235aa)
Family 2 glycosyl transferase Tax=Pontibacter sp. BAB1700 RepID=J0V4P2_9BACT bin=16ft_combo_ws3_JS1 species=Pontibacter sp. BAB1700 genus=Pontibacter taxon_order=Cytophagales taxon_class=Cytophagia phylum=Bacteroidetes tax=16ft_combo_ws3_JS1 organism_group=Unknown_CP organism_desc=Cant place firmly withiin either WS3 or JS1. Part of a large Rifle clade
glycoside transferase family protein
Tax=RBG_16_RIF_WS3X_71_46_curated
PLM3_127_b2_sep16_scaffold_7971_20
unknown

Not on your lists

comp(18913..19533)
DNA (621bp) protein (207aa)

This feature has no annotations

PLM3_127_b2_sep16_scaffold_7971_21
RBG_16_RIF_WS3X_71_46_curated, RIF-WS3X, Bacteria

Not on your lists

comp(19562..21682)
DNA (2121bp) protein (707aa)
pyruvate phosphate dikinase (EC:2.7.9.1); K01006 pyruvate,orthophosphate dikinase [EC:2.7.9.1] bin=RBG_19FT_COMBO_CP_WS3-like_JS1_11 species=unknown genus=unknown taxon_order=Planctomycetales taxon_class=Planctomycetia phylum=Planctomycetes tax=RBG_19FT_COMBO_CP_WS3-like_JS1_11 organism_group=Unknown_CP organism_desc=Curation Candidate WS3-like JS1- Novel phyla exclusive to Rifle. 98% similar to 16ft bin
pyruvate phosphate dikinase (EC:2.7.9.1)
Tax=RBG_16_RIF_WS3X_71_46_curated
Displaying 22 items

View Taxonomy