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PLM3_127_b2_sep16_scaffold_8675

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Displaying 8 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
PLM3_127_b2_sep16_scaffold_8675_1
RBG_16_RIF_WS3X_71_46_curated, RIF-WS3X, Bacteria

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28..378
DNA (351bp) protein (117aa)
UPF0102 protein Dsui_0252 Tax=Azospira oryzae (strain ATCC BAA-33 / DSM 13638 / PS) RepID=G8QMU1_AZOSU bin=16ft_combo_ws3_JS1 species=Azospira oryzae genus=Azospira taxon_order=Rhodocyclales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=16ft_combo_ws3_JS1 organism_group=Unknown_CP organism_desc=Cant place firmly withiin either WS3 or JS1. Part of a large Rifle clade
hypothetical protein
Tax=RBG_16_RIF_WS3X_71_46_curated
PLM3_127_b2_sep16_scaffold_8675_2
unknown

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comp(757..993)
DNA (237bp) protein (79aa)

This feature has no annotations

PLM3_127_b2_sep16_scaffold_8675_3
RBG_16_RIF_WS3X_71_46_curated, RIF-WS3X, Bacteria

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2429..3694
DNA (1266bp) protein (422aa)
Outer membrane efflux protein Tax=Syntrophobacter fumaroxidans (strain DSM 10017 / MPOB) RepID=A0LL13_SYNFM bin=16ft_combo_ws3_JS1 species=Syntrophobacter fumaroxidans genus=Syntrophobacter taxon_order=Syntrophobacterales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=16ft_combo_ws3_JS1 organism_group=Unknown_CP organism_desc=Cant place firmly withiin either WS3 or JS1. Part of a large Rifle clade
outer membrane efflux protein
Tax=RBG_16_RIF_WS3X_71_46_curated
PLM3_127_b2_sep16_scaffold_8675_4
RBG_16_RIF_WS3X_71_46_curated, RIF-WS3X, Bacteria

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3701..4813
DNA (1113bp) protein (371aa)
Efflux transporter, RND family, MFP subunit Tax=Geobacter sp. (strain M18) RepID=E8WUI6_GEOS8 bin=16ft_combo_ws3_JS1 species=Geobacter sp. genus=Geobacter taxon_order=Desulfuromonadales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=16ft_combo_ws3_JS1 organism_group=Unknown_CP organism_desc=Cant place firmly withiin either WS3 or JS1. Part of a large Rifle clade
RND family efflux transporter MFP subunit
Tax=RBG_16_RIF_WS3X_71_46_curated
PLM3_127_b2_sep16_scaffold_8675_5
RBG_16_RIF_WS3X_71_46_curated, RIF-WS3X, Bacteria

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4817..7885
DNA (3069bp) protein (1023aa)
Heavy metal efflux pump Tax=Nitrosococcus RepID=Q3JER0_NITOC bin=16ft_combo_ws3_JS1 species=unknown genus=Nitrosococcus taxon_order=Chromatiales taxon_class=Gammaproteobacteria phylum=Proteobacteria tax=16ft_combo_ws3_JS1 organism_group=Unknown_CP organism_desc=Cant place firmly withiin either WS3 or JS1. Part of a large Rifle clade
heavy metal efflux pump
Tax=RBG_16_RIF_WS3X_71_46_curated
PLM3_127_b2_sep16_scaffold_8675_6
unknown

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7895..8038
DNA (144bp) protein (48aa)

This feature has no annotations

PLM3_127_b2_sep16_scaffold_8675_7
RBG_16_RIF_WS3X_71_46_curated, RIF-WS3X, Bacteria

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8017..8199
DNA (183bp) protein (61aa)
Nitrogen regulatory protein P-II Tax=Nitrospina gracilis 3/211 RepID=M1YVC7_9BACT bin=16ft_combo_ws3_JS1 species=Nitrospina gracilis genus=Nitrospina taxon_order=Nitrospinales taxon_class=Nitrospinia phylum=Nitrospinae tax=16ft_combo_ws3_JS1 organism_group=Unknown_CP organism_desc=Cant place firmly withiin either WS3 or JS1. Part of a large Rifle clade
glnK; regulatory protein, P-II 2, for nitrogen assimilation by glutamine synthetase, regulates GlnL (NRII) and GlnE (ATase)
Tax=RBG_16_RIF_WS3X_71_46_curated
PLM3_127_b2_sep16_scaffold_8675_8
RBG_16_Planctomycetes_64_12_curated, Planctomycetia, Planctomycetes, Bacteria

Not on your lists

8264..8455
DNA (192bp) protein (64aa)
COG2217: Cation transport ATPase Tax=Magnetospirillum magnetotacticum MS-1 RepID=UPI0000383FC9 bin=16ft_combo_ws3_JS1 species=Magnetospirillum magnetotacticum genus=Magnetospirillum taxon_order=Rhodospirillales taxon_class=Alphaproteobacteria phylum=Proteobacteria tax=16ft_combo_ws3_JS1 organism_group=Unknown_CP organism_desc=Cant place firmly withiin either WS3 or JS1. Part of a large Rifle clade
Tax=RBG_16_Planctomycetes_64_12_curated
Displaying 8 items

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