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PLM3_127_b2_sep16_scaffold_14277

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Displaying 9 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
PLM3_127_b2_sep16_scaffold_14277_1
RBG_16_RIF_WS3X_71_46_curated, RIF-WS3X, Bacteria

Not on your lists

comp(320..3148)
DNA (2829bp) protein (943aa)
Surface antigen (D15) Tax=Caldithrix abyssi DSM 13497 RepID=H1XRH5_9BACT bin=16ft_combo_ws3_JS1 species=Caldithrix abyssi genus=Caldithrix taxon_order=unknown taxon_class=unknown phylum=unknown tax=16ft_combo_ws3_JS1 organism_group=Unknown_CP organism_desc=Cant place firmly withiin either WS3 or JS1. Part of a large Rifle clade
WD40 domain-containing protein beta propeller
Tax=RBG_16_RIF_WS3X_71_46_curated
PLM3_127_b2_sep16_scaffold_14277_2
RBG_16_RIF_WS3X_71_46_curated, RIF-WS3X, Bacteria

Not on your lists

comp(3173..3784)
DNA (612bp) protein (204aa)
dihydrodipicolinate reductase (EC:1.3.1.26)
4-hydroxy-tetrahydrodipicolinate reductase Tax=Thermomicrobium roseum (strain ATCC 27502 / DSM 5159 / P-2) RepID=DAPB_THERP bin=16ft_combo_ws3_JS1 species=Thermomicrobium roseum genus=Thermomicrobium taxon_order=Thermomicrobiales taxon_class=Thermomicrobia phylum=Chloroflexi tax=16ft_combo_ws3_JS1 organism_group=Unknown_CP organism_desc=Cant place firmly withiin either WS3 or JS1. Part of a large Rifle clade
Tax=RBG_16_RIF_WS3X_71_46_curated
PLM3_127_b2_sep16_scaffold_14277_3
RBG_16_RIF_WS3X_71_46_curated, RIF-WS3X, Bacteria

Not on your lists

comp(3814..4521)
DNA (708bp) protein (236aa)
dapA; dihydrodipicolinate synthase (EC:4.2.1.52); K01714 dihydrodipicolinate synthase [EC:4.2.1.52] bin=RBG_19FT_COMBO_CP_WS3-like_JS1_11 species=Deferribacter desulfuricans genus=Deferribacter taxon_order=Deferribacterales taxon_class=Deferribacteres phylum=Deferribacteres tax=RBG_19FT_COMBO_CP_WS3-like_JS1_11 organism_group=Unknown_CP organism_desc=Curation Candidate WS3-like JS1- Novel phyla exclusive to Rifle. 98% similar to 16ft bin
dihydrodipicolinate synthase (EC:4.2.1.52)
Tax=RBG_16_RIF_WS3X_71_46_curated
PLM3_127_b2_sep16_scaffold_14277_4
RBG_16_RIF_WS3X_71_46_curated, RIF-WS3X, Bacteria

Not on your lists

comp(4671..5603)
DNA (933bp) protein (311aa)
diaminopimelate epimerase (EC:5.1.1.7)
Diaminopimelate epimerase Tax=delta proteobacterium MLMS-1 RepID=Q1NP11_9DELT bin=16ft_combo_ws3_JS1 species=delta proteobacterium MLMS-1 genus=unknown taxon_order=unknown taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=16ft_combo_ws3_JS1 organism_group=Unknown_CP organism_desc=Cant place firmly withiin either WS3 or JS1. Part of a large Rifle clade
Tax=RBG_16_RIF_WS3X_71_46_curated
PLM3_127_b2_sep16_scaffold_14277_5
RBG_16_RIF_WS3X_71_46_curated, RIF-WS3X, Bacteria

Not on your lists

comp(5611..6645)
DNA (1035bp) protein (345aa)
Putative uncharacterized protein bin=RBG_19FT_COMBO_CP_WS3-like_JS1_11 species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=RBG_19FT_COMBO_CP_WS3-like_JS1_11 organism_group=Unknown_CP organism_desc=Curation Candidate WS3-like JS1- Novel phyla exclusive to Rifle. 98% similar to 16ft bin
Tax=RBG_16_RIF_WS3X_71_46_curated
PLM3_127_b2_sep16_scaffold_14277_6
RBG_16_RIF_WS3X_71_46_curated, RIF-WS3X, Bacteria

Not on your lists

comp(6669..7628)
DNA (960bp) protein (320aa)
Tyrosine recombinase XerC Tax=Desulfotomaculum kuznetsovii (strain DSM 6115 / VKM B-1805 / 17) RepID=F6CIQ2_DESK7 bin=16ft_combo_ws3_JS1 species=Desulfotomaculum kuznetsovii genus=Desulfotomaculum taxon_order=Clostridiales taxon_class=Clostridia phylum=Firmicutes tax=16ft_combo_ws3_JS1 organism_group=Unknown_CP organism_desc=Cant place firmly withiin either WS3 or JS1. Part of a large Rifle clade
tyrosine recombinase xerC
Tax=RBG_16_RIF_WS3X_71_46_curated
PLM3_127_b2_sep16_scaffold_14277_7
RBG_16_RIF_WS3X_71_46_curated, RIF-WS3X, Bacteria

Not on your lists

comp(7621..9282)
DNA (1662bp) protein (554aa)
DNA topoisomerase I (EC:5.99.1.2)
DNA topoisomerase Tax=Haliangium ochraceum (strain DSM 14365 / JCM 11303 / SMP-2) RepID=D0LR99_HALO1 bin=16ft_combo_ws3_JS1 species=Haliangium ochraceum genus=Haliangium taxon_order=Myxococcales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=16ft_combo_ws3_JS1 organism_group=Unknown_CP organism_desc=Cant place firmly withiin either WS3 or JS1. Part of a large Rifle clade
Tax=RBG_16_RIF_WS3X_71_46_curated
PLM3_127_b2_sep16_scaffold_14277_8
RBG_16_RIF_WS3X_71_46_curated, RIF-WS3X, Bacteria

Not on your lists

comp(10256..10750)
DNA (495bp) protein (165aa)
alias=16ft_combo_ws3_scaffold_92_64 bin=RBG_19FT_COMBO_CP_WS3-like_JS1_11 species=16ft_combo_ws3 genus=16ft_combo_ws3 taxon_order=16ft_combo_ws3 taxon_class=16ft_combo_ws3 phylum=WS3 tax=RBG_19FT_COMBO_CP_WS3-like_JS1_11 organism_group=Unknown_CP organism_desc=Curation Candidate WS3-like JS1- Novel phyla exclusive to Rifle. 98% similar to 16ft bin
Tax=RBG_16_RIF_WS3X_71_46_curated
PLM3_127_b2_sep16_scaffold_14277_9
RBG_16_RIF_WS3X_71_46_curated, RIF-WS3X, Bacteria

Not on your lists

comp(10765..11844)
DNA (1080bp) protein (360aa)
Protein translocase subunit SecA Tax=Caldithrix abyssi DSM 13497 RepID=H1XNS3_9BACT bin=16ft_combo_ws3_JS1 species=Caldithrix abyssi genus=Caldithrix taxon_order=unknown taxon_class=unknown phylum=unknown tax=16ft_combo_ws3_JS1 organism_group=Unknown_CP organism_desc=Cant place firmly withiin either WS3 or JS1. Part of a large Rifle clade
Preprotein translocase subunit SecA
Tax=RBG_16_RIF_WS3X_71_46_curated
Displaying 9 items

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