ggKbase home page

PLM3_127_b2_sep16_scaffold_18545

Search features with annotation key words

Displaying 14 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
PLM3_127_b2_sep16_scaffold_18545_1
RBG_16_RIF_WS3X_71_46_curated, RIF-WS3X, Bacteria

Not on your lists

28..732
DNA (705bp) protein (235aa)
BNR repeat-containing glycosyl hydrolase bin=RBG_19FT_COMBO_CP_WS3-like_JS1_11 species=Geobacter sp. genus=Geobacter taxon_order=Desulfuromonadales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=RBG_19FT_COMBO_CP_WS3-like_JS1_11 organism_group=Unknown_CP organism_desc=Curation Candidate WS3-like JS1- Novel phyla exclusive to Rifle. 98% similar to 16ft bin
peptidase S8/S53
Tax=RBG_16_RIF_WS3X_71_46_curated
PLM3_127_b2_sep16_scaffold_18545_2
RBG_16_RIF_WS3X_71_46_curated, RIF-WS3X, Bacteria

Not on your lists

855..1898
DNA (1044bp) protein (348aa)
Mannose-1-phosphate guanylyltransferase Tax=Coraliomargarita akajimensis (strain DSM 45221 / IAM 15411 / JCM 23193 / KCTC 12865) RepID=D5ENN2_CORAD bin=16ft_combo_ws3_JS1 species=Coraliomargarita akajimensis genus=Coraliomargarita taxon_order=Puniceicoccales taxon_class=Opitutae phylum=Verrucomicrobia tax=16ft_combo_ws3_JS1 organism_group=Unknown_CP organism_desc=Cant place firmly withiin either WS3 or JS1. Part of a large Rifle clade
mannose-1-phosphate guanylyltransferase
Tax=RBG_16_RIF_WS3X_71_46_curated
PLM3_127_b2_sep16_scaffold_18545_3
RBG_16_RIF_WS3X_71_46_curated, RIF-WS3X, Bacteria

Not on your lists

1925..2671
DNA (747bp) protein (249aa)
Atherin Tax=Mus musculus RepID=SAMD1_MOUSE bin=16ft_combo_ws3_JS1 species=Mus musculus genus=Mus taxon_order=Rodentia taxon_class=Mammalia phylum=Chordata tax=16ft_combo_ws3_JS1 organism_group=Unknown_CP organism_desc=Cant place firmly withiin either WS3 or JS1. Part of a large Rifle clade
Tax=RBG_16_RIF_WS3X_71_46_curated
PLM3_127_b2_sep16_scaffold_18545_4
RBG_16_RIF_WS3X_71_46_curated, RIF-WS3X, Bacteria

Not on your lists

2668..3924
DNA (1257bp) protein (419aa)
Putative uncharacterized protein Tax=Roseiflexus sp. (strain RS-1) RepID=A5UWM0_ROSS1 bin=16ft_combo_ws3_JS1 species=unknown genus=Roseiflexus taxon_order=Chloroflexales taxon_class=Chloroflexi phylum=Chloroflexi tax=16ft_combo_ws3_JS1 organism_group=Unknown_CP organism_desc=Cant place firmly withiin either WS3 or JS1. Part of a large Rifle clade
hypothetical protein
Tax=RBG_16_RIF_WS3X_71_46_curated
PLM3_127_b2_sep16_scaffold_18545_5
RBG_16_RIF_WS3X_71_46_curated, RIF-WS3X, Bacteria

Not on your lists

4582..5019
DNA (438bp) protein (146aa)
galactose-1-phosphate uridylyltransferase (EC:2.7.7.12)
Galactose-1-phosphate uridylyltransferase Tax=Koribacter versatilis (strain Ellin345) RepID=Q1IUV2_KORVE bin=16ft_combo_ws3_JS1 species=Candidatus Koribacter versatilis genus=Candidatus Koribacter taxon_order=unknown taxon_class=unknown phylum=Acidobacteria tax=16ft_combo_ws3_JS1 organism_group=Unknown_CP organism_desc=Cant place firmly withiin either WS3 or JS1. Part of a large Rifle clade
Tax=RBG_16_RIF_WS3X_71_46_curated
PLM3_127_b2_sep16_scaffold_18545_6
RBG_16_RIF_WS3X_71_46_curated, RIF-WS3X, Bacteria

Not on your lists

5026..6642
DNA (1617bp) protein (539aa)
glgA; glycogen synthase (EC:2.4.1.21)
Glycogen synthase Tax=Candidatus Methylomirabilis oxyfera RepID=D5MJP6_9BACT bin=16ft_combo_ws3_JS1 species=Candidatus Methylomirabilis oxyfera genus=Candidatus Methylomirabilis taxon_order=unknown taxon_class=unknown phylum=unknown tax=16ft_combo_ws3_JS1 organism_group=Unknown_CP organism_desc=Cant place firmly withiin either WS3 or JS1. Part of a large Rifle clade
Tax=RBG_16_RIF_WS3X_71_46_curated
PLM3_127_b2_sep16_scaffold_18545_7
RBG_16_RIF_WS3X_71_46_curated, RIF-WS3X, Bacteria

Not on your lists

comp(6659..7315)
DNA (657bp) protein (219aa)
aspartate kinase (EC:2.7.2.4)
Aspartokinase Tax=Aeromicrobium marinum DSM 15272 RepID=E2SC90_9ACTO bin=16ft_combo_ws3_JS1 species=Aeromicrobium marinum genus=Aeromicrobium taxon_order=Actinomycetales taxon_class=Actinobacteria phylum=Actinobacteria tax=16ft_combo_ws3_JS1 organism_group=Unknown_CP organism_desc=Cant place firmly withiin either WS3 or JS1. Part of a large Rifle clade
Tax=RBG_16_RIF_WS3X_71_46_curated
PLM3_127_b2_sep16_scaffold_18545_8
RBG_16_RIF_WS3X_71_46_curated, RIF-WS3X, Bacteria

Not on your lists

comp(7312..7713)
DNA (402bp) protein (134aa)
aspartate kinase (EC:2.7.2.4); K00928 aspartate kinase [EC:2.7.2.4] bin=RBG_19FT_COMBO_CP_WS3-like_JS1_11 species=Aeromicrobium marinum genus=Aeromicrobium taxon_order=Actinomycetales taxon_class=Actinobacteria phylum=Actinobacteria tax=RBG_19FT_COMBO_CP_WS3-like_JS1_11 organism_group=Unknown_CP organism_desc=Curation Candidate WS3-like JS1- Novel phyla exclusive to Rifle. 98% similar to 16ft bin
Aspartokinase (EC:2.7.2.4)
Tax=RBG_16_RIF_WS3X_71_46_curated
PLM3_127_b2_sep16_scaffold_18545_trna_1
unknown

Not on your lists

7873..7946
DNA (74bp)
transferRNA Gly
PLM3_127_b2_sep16_scaffold_18545_9
RBG_16_RIF_WS3X_71_46_curated, RIF-WS3X, Bacteria

Not on your lists

8007..8618
DNA (612bp) protein (204aa)
folE; GTP cyclohydrolase I bin=RBG_19FT_COMBO_CP_WS3-like_JS1_11 species=uncultured Eggerthella sp. SMG5 genus=Eggerthella taxon_order=Coriobacteriales taxon_class=Actinobacteria phylum=Actinobacteria tax=RBG_19FT_COMBO_CP_WS3-like_JS1_11 organism_group=Unknown_CP organism_desc=Curation Candidate WS3-like JS1- Novel phyla exclusive to Rifle. 98% similar to 16ft bin
GTP cyclohydrolase
Tax=RBG_16_RIF_WS3X_71_46_curated
PLM3_127_b2_sep16_scaffold_18545_10
Pyrinomonas methylaliphatogenes, Pyrinomonas, Acidobacteria, Bacteria

Not on your lists

8618..9397
DNA (780bp) protein (260aa)
Glycosyl transferase family 2 Tax=Pseudoxanthomonas suwonensis (strain 11-1) RepID=E6WSR8_PSEUU
Glycosyl transferase {ECO:0000313|EMBL:CDM64374.1}; species="Bacteria; Acidobacteria; Acidobacteria subdivision 4; Pyrinomonas.;" source="Pyrinomonas methylaliphatogenes.;"
family 2 glycosyl transferase
PLM3_127_b2_sep16_scaffold_18545_11
RBG_16_RIF_WS3X_71_46_curated, RIF-WS3X, Bacteria

Not on your lists

9394..10302
DNA (909bp) protein (303aa)
thioredoxin reductase (EC:1.8.1.9)
Thioredoxin reductase Tax=Chloracidobacterium thermophilum (strain B) RepID=G2LID2_CHLTF bin=16ft_combo_ws3_JS1 species=Candidatus Chloracidobacterium thermophilum genus=Candidatus Chloracidobacterium taxon_order=unknown taxon_class=unknown phylum=Acidobacteria tax=16ft_combo_ws3_JS1 organism_group=Unknown_CP organism_desc=Cant place firmly withiin either WS3 or JS1. Part of a large Rifle clade
Tax=RBG_16_RIF_WS3X_71_46_curated
PLM3_127_b2_sep16_scaffold_18545_12
unknown

Not on your lists

10402..10986
DNA (585bp) protein (195aa)

This feature has no annotations

PLM3_127_b2_sep16_scaffold_18545_13
unknown

Not on your lists

10990..11055
DNA (66bp) protein (22aa)

This feature has no annotations

Displaying 14 items

View Taxonomy