ggKbase home page

PLM3_127_b2_sep16_scaffold_833

Search features with annotation key words

Displaying items 1-30 of 32 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
PLM3_127_b2_sep16_scaffold_833_1
unknown

Not on your lists

2..229
DNA (228bp) protein (76aa)

This feature has no annotations

PLM3_127_b2_sep16_scaffold_833_2
RBG_16_Gemmatimonadetes_66_8_curated, Gemmatimonadetes, Bacteria

Not on your lists

comp(233..1804)
DNA (1572bp) protein (524aa)
Uncharacterized protein Tax=Solitalea canadensis (strain ATCC 29591 / DSM 3403 / NBRC 15130 / NCIMB 12057 / USAM 9D) RepID=H8KXX7_SOLCM
Elongator protein 3/MiaB/NifB
Tax=RBG_16_Gemmatimonadetes_66_8_curated
PLM3_127_b2_sep16_scaffold_833_3
Janthinobacterium agaricidamnosum, Janthinobacterium, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(1967..2821)
DNA (855bp) protein (285aa)
hypothetical protein Tax=Janthinobacterium sp. CG3 RepID=UPI000349B40B
diacylglycerol kinase catalytic domain family protein
Diacylglycerol kinase catalytic domain family protein {ECO:0000313|EMBL:CDG84379.1}; species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Oxalobacteraceae; Janthinobacterium.;" source="Janthinobacterium agaricidamnosum NBRC 102515 = DSM 9628.;"
PLM3_127_b2_sep16_scaffold_833_4
Candidatus Solibacter usitatus, Candidatus Solibacter, Solibacterales, Solibacteres, Acidobacteria, Bacteria

Not on your lists

comp(2818..3519)
DNA (702bp) protein (234aa)
Phosphoesterase, PA-phosphatase related Tax=Solibacter usitatus (strain Ellin6076) RepID=Q029U2_SOLUE
PA-phosphatase-like phosphoesterase
Phosphoesterase, PA-phosphatase related {ECO:0000313|EMBL:ABJ82184.1}; Flags: Precursor;; species="Bacteria; Acidobacteria; Solibacteres; Solibacterales; Solibacteraceae; Candidatus Solibacter.;" source="Solibacter usitatus (strain Ellin6076).;"
PLM3_127_b2_sep16_scaffold_833_5
GWC2_Gemmatimonadetes_71_10_curated, Gemmatimonadetes, Bacteria

Not on your lists

3825..5588
DNA (1764bp) protein (588aa)
protein kinase
serine/threonine protein kinase bin=RBG_16_Aminicenantes_63_16_plus species=Haliangium ochraceum genus=Haliangium taxon_order=Myxococcales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=RBG_16_Aminicenantes_63_16_plus organism_group=OP8 (Aminicenantes) organism_desc=Curation Candidate Resolve three similar GC_Cov Aminicentantes bins with ESOM
Tax=GWC2_Gemmatimonadetes_71_10_curated
PLM3_127_b2_sep16_scaffold_833_6

Not on your lists

5585..6409
DNA (825bp) protein (275aa)
amidohydrolase Tax=Spirosoma panaciterrae RepID=UPI00036168C4
Marine sediment metagenome DNA, contig: S03H2_S15575 {ECO:0000313|EMBL:GAH66172.1}; Flags: Fragment;; species="unclassified sequences; metagenomes; ecological metagenomes.;" source="marine sediment metagenome.;"
transcriptional regulatory protein-like
PLM3_127_b2_sep16_scaffold_833_7
unknown

Not on your lists

6583..6696
DNA (114bp) protein (38aa)

This feature has no annotations

PLM3_127_b2_sep16_scaffold_833_8
R_Gemmatimonadetes_71_11, Gemmatimonadetes, Bacteria

Not on your lists

comp(6677..7177)
DNA (501bp) protein (167aa)
Putative uncharacterized protein Tax=Meiothermus silvanus (strain ATCC 700542 / DSM 9946 / VI-R2) RepID=D7BFN8_MEISD
hypothetical protein
Tax=RIFCSPLOWO2_02_FULL_Gemmatimonadetes_71_11_curated
PLM3_127_b2_sep16_scaffold_833_9
RLO_Gemmatimonadetes_68_9, Gemmatimonadetes, Bacteria

Not on your lists

comp(7205..8809)
DNA (1605bp) protein (535aa)
Putative uncharacterized protein bin=GWA2_Elusimicrobia_66_18 species=Hahella chejuensis genus=Hahella taxon_order=Oceanospirillales taxon_class=Gammaproteobacteria phylum=Proteobacteria tax=GWA2_Elusimicrobia_66_18 organism_group=Elusimicrobia organism_desc=Part of new group in this phylum
hypothetical protein
Tax=RIFCSPLOWO2_12_FULL_Gemmatimonadetes_68_9_curated
PLM3_127_b2_sep16_scaffold_833_10
Gemmatimonadetes bacterium KBS708, Gemmatimonadetes, Gemmatimonadetes, Bacteria

Not on your lists

8973..10361
DNA (1389bp) protein (463aa)
Uncharacterized protein Tax=Gemmatimonas aurantiaca (strain T-27 / DSM 14586 / JCM 11422 / NBRC 100505) RepID=C1A7N9_GEMAT
Protein of unknown function DUF3108
Uncharacterized protein {ECO:0000313|EMBL:AHG89517.1}; species="Bacteria; Gemmatimonadetes.;" source="Gemmatimonadetes bacterium KBS708.;"
PLM3_127_b2_sep16_scaffold_833_11
RLO_Gemmatimonadetes_68_9, Gemmatimonadetes, Bacteria

Not on your lists

comp(10536..12044)
DNA (1509bp) protein (503aa)
Glutamine synthetase Tax=Gemmatimonas aurantiaca (strain T-27 / DSM 14586 / JCM 11422 / NBRC 100505) RepID=C1A4T4_GEMAT
glutamine synthetase, type I
Tax=RIFCSPLOWO2_12_FULL_Gemmatimonadetes_68_9_curated
PLM3_127_b2_sep16_scaffold_833_12
RBG_16_Gemmatimonadetes_66_8_curated, Gemmatimonadetes, Bacteria

Not on your lists

12069..12857
DNA (789bp) protein (263aa)
Double zinc ribbon
Adenylyl cyclase class-3/4/guanylyl cyclase:Tetratricopeptide TPR_4 bin=GWC2_Methylomirabilis_70_16 species=Cupriavidus necator genus=Cupriavidus taxon_order=Burkholderiales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=GWC2_Methylomirabilis_70_16 organism_group=NC10
Tax=RBG_16_Gemmatimonadetes_66_8_curated
PLM3_127_b2_sep16_scaffold_833_13
RLO_Gemmatimonadetes_68_9, Gemmatimonadetes, Bacteria

Not on your lists

12948..13793
DNA (846bp) protein (282aa)
Putative periplasmic solute-binding protein Tax=Singulisphaera acidiphila RepID=L0DMZ9_SINAD
protein of unknown function DUF178
Tax=RIFCSPLOWO2_12_FULL_Gemmatimonadetes_68_9_curated
PLM3_127_b2_sep16_scaffold_833_14
RLO_Gemmatimonadetes_68_9, Gemmatimonadetes, Bacteria

Not on your lists

13993..15057
DNA (1065bp) protein (355aa)
Two-component response regulator Tax=Gemmatimonas aurantiaca (strain T-27 / DSM 14586 / JCM 11422 / NBRC 100505) RepID=C1A4T1_GEMAT
two-component response regulator
Tax=RIFCSPLOWO2_12_FULL_Gemmatimonadetes_68_9_curated
PLM3_127_b2_sep16_scaffold_833_15
Microcystis aeruginosa, Microcystis, Chroococcales, Oscillatoriophycideae, Cyanobacteria, Bacteria

Not on your lists

15111..18644
DNA (3534bp) protein (1178aa)
Similar to tr|Q8YVS1|Q8YVS1 Tax=Microcystis aeruginosa PCC 7806 RepID=A8YKR2_MICAE
Similar to tr|Q8YVS1|Q8YVS1 {ECO:0000313|EMBL:CAO90937.1}; species="Bacteria; Cyanobacteria; Oscillatoriophycideae; Chroococcales; Microcystis.;" source="Microcystis aeruginosa PCC 7806.;"
PBS lyase HEAT domain-containing protein
PLM3_127_b2_sep16_scaffold_833_16
CSP1_8_Deltaproteobacteria, 43F-1404R, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

18641..20203
DNA (1563bp) protein (521aa)
glycosyl transferase bin=bin5_DeltaP species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=Latescibacteria tax=bin5_DeltaP organism_group=Deltaproteobacteria
family 2 glycosyl transferase
Tax=CSP1_8_Deltaproteobacteria
PLM3_127_b2_sep16_scaffold_833_17
R_Gemmatimonadetes_71_11, Gemmatimonadetes, Bacteria

Not on your lists

20211..21251
DNA (1041bp) protein (347aa)
chemotaxis protein CheY Tax=Methylobacterium sp. MB200 RepID=UPI00034D2D1A
signal transduction histidine kinase
Tax=RIFCSPLOWO2_02_FULL_Gemmatimonadetes_71_11_curated
PLM3_127_b2_sep16_scaffold_833_18
RBG_16_Gemmatimonadetes_66_8_curated, Gemmatimonadetes, Bacteria

Not on your lists

comp(21214..22254)
DNA (1041bp) protein (347aa)
Protease HtpX homolog bin=GWC2_Ignavibacteria_56_12 species=Rubrobacter xylanophilus genus=Rubrobacter taxon_order=Rubrobacterales taxon_class=Actinobacteria phylum=Actinobacteria tax=GWC2_Ignavibacteria_56_12 organism_group=Ignavibacteria organism_desc=Larger genome
Zn-dependent protease with chaperone function
Tax=RBG_16_Gemmatimonadetes_66_8_curated
PLM3_127_b2_sep16_scaffold_833_19
GWC2_Gemmatimonadetes_71_10_curated, Gemmatimonadetes, Bacteria

Not on your lists

comp(22251..22823)
DNA (573bp) protein (191aa)
Uncharacterized protein bin=GWA2_Ignavibacteria_55_11 species=unknown genus=unknown taxon_order=Thermotogales taxon_class=Thermotogae phylum=Thermotogae tax=GWA2_Ignavibacteria_55_11 organism_group=Ignavibacteria organism_desc=Closely related to GWC2 genome
LemA family protein
Tax=GWC2_Gemmatimonadetes_71_10_curated
PLM3_127_b2_sep16_scaffold_833_20
RBG_16_Gemmatimonadetes_66_8_curated, Gemmatimonadetes, Bacteria

Not on your lists

comp(22933..23616)
DNA (684bp) protein (228aa)
Uncharacterized protein Tax=Gemmatimonas aurantiaca (strain T-27 / DSM 14586 / JCM 11422 / NBRC 100505) RepID=C1A4S8_GEMAT
hypothetical protein
Tax=RBG_16_Gemmatimonadetes_66_8_curated
PLM3_127_b2_sep16_scaffold_833_21
Chloroflexus aurantiacus, Chloroflexus, Chloroflexales, Chloroflexia, Chloroflexi, Bacteria

Not on your lists

comp(23613..24023)
DNA (411bp) protein (137aa)
PAS sensor protein Tax=Chloroflexus aurantiacus (strain ATCC 29366 / DSM 635 / J-10-fl) RepID=A9W9X5_CHLAA
PAS sensor protein
PAS sensor protein {ECO:0000313|EMBL:ABY34611.1}; species="Bacteria; Chloroflexi; Chloroflexia; Chloroflexales; Chloroflexineae; Chloroflexaceae; Chloroflexus.;" source="Chloroflexus aurantiacus (strain ATCC 29366 / DSM 635 / J-10-fl).;"
PLM3_127_b2_sep16_scaffold_833_22
RBG_16_Gemmatimonadetes_66_8_curated, Gemmatimonadetes, Bacteria

Not on your lists

comp(24020..24919)
DNA (900bp) protein (300aa)
AraC family transcriptional regulator Tax=Gemmatimonas aurantiaca (strain T-27 / DSM 14586 / JCM 11422 / NBRC 100505) RepID=C1A3G9_GEMAT
Helix-turn-helix, AraC domain-containing protein
Tax=RBG_16_Gemmatimonadetes_66_8_curated
PLM3_127_b2_sep16_scaffold_833_23
unknown

Not on your lists

24923..25066
DNA (144bp) protein (48aa)

This feature has no annotations

PLM3_127_b2_sep16_scaffold_833_24
unknown

Not on your lists

comp(25110..26402)
DNA (1293bp) protein (431aa)

This feature has no annotations

PLM3_127_b2_sep16_scaffold_833_25
RBG_16_Gemmatimonadetes_66_8_curated, Gemmatimonadetes, Bacteria

Not on your lists

26587..27012
DNA (426bp) protein (142aa)
Tax=RBG_16_Gemmatimonadetes_66_8_curated
PLM3_127_b2_sep16_scaffold_833_26
GWC2_Gemmatimonadetes_71_10_curated, Gemmatimonadetes, Bacteria

Not on your lists

comp(27101..27730)
DNA (630bp) protein (210aa)
Tax=GWC2_Gemmatimonadetes_71_10_curated
PLM3_127_b2_sep16_scaffold_833_27
Desulfovibrio sp. X2, Desulfovibrio, Desulfovibrionales, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(27711..28088)
DNA (378bp) protein (126aa)
Two component, sigma54 specific, transcriptional regulator, Fis family Tax=Desulfovibrio sp. X2 RepID=S7U2L8_9DELT
Two component, sigma54 specific, transcriptional regulator, Fis family {ECO:0000313|EMBL:EPR43701.1}; species="Bacteria; Proteobacteria; Deltaproteobacteria; Desulfovibrionales; Desulfovibrionaceae; Desulfovibrio.;" source="Desulfovibrio sp. X2.;"
Fis family transcriptional regulator
PLM3_127_b2_sep16_scaffold_833_28
unknown

Not on your lists

comp(28747..29310)
DNA (564bp) protein (188aa)

This feature has no annotations

PLM3_127_b2_sep16_scaffold_833_29
RLO_Gemmatimonadetes_68_9, Gemmatimonadetes, Bacteria

Not on your lists

comp(29307..30017)
DNA (711bp) protein (237aa)
Tax=RIFCSPLOWO2_12_FULL_Gemmatimonadetes_68_9_curated
PLM3_127_b2_sep16_scaffold_833_30
Gemmatimonas aurantiaca, Gemmatimonas, Gemmatimonadales, Gemmatimonadetes, Gemmatimonadetes, Bacteria

Not on your lists

comp(30143..32062)
DNA (1920bp) protein (640aa)
Uncharacterized protein Tax=Gemmatimonas aurantiaca (strain T-27 / DSM 14586 / JCM 11422 / NBRC 100505) RepID=C1A4M8_GEMAT
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:BAH37188.1}; species="Bacteria; Gemmatimonadetes; Gemmatimonadales; Gemmatimonadaceae; Gemmatimonas.;" source="Gemmatimonas aurantiaca (strain T-27 / DSM 14586 / JCM 11422 / NBRC; 100505).;"
Displaying items 1-30 of 32 in total

View Taxonomy