ggKbase home page

PLM3_127_b2_sep16_scaffold_24893

Search features with annotation key words

Displaying 9 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
PLM3_127_b2_sep16_scaffold_24893_1
R_Rokubacteria_71_18, Rokubacteria, Bacteria

Not on your lists

3..299
DNA (297bp) protein (99aa)
hypothetical protein Tax=Zavarzinella formosa RepID=UPI0003179275
NHL repeat family protein
Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_71_18_curated
PLM3_127_b2_sep16_scaffold_24893_2
R_Nitrospirae_62_14, Nitrospirae, Bacteria

Not on your lists

649..2091
DNA (1443bp) protein (481aa)
Uncharacterized protein Tax=Candidatus Nitrospira defluvii RepID=D8PHI7_9BACT
hypothetical protein
Tax=RIFCSPLOWO2_02_FULL_Nitrospirae_62_14_curated
PLM3_127_b2_sep16_scaffold_24893_3
R_Nitrospirae_62_14, Nitrospirae, Bacteria

Not on your lists

2079..2723
DNA (645bp) protein (215aa)
Uncharacterized protein Tax=Candidatus Nitrospira defluvii RepID=D8PHI7_9BACT
hypothetical protein
Tax=RIFCSPLOWO2_02_FULL_Nitrospirae_62_14_curated
PLM3_127_b2_sep16_scaffold_24893_trna_1
unknown

Not on your lists

comp(2817..2889)
DNA (73bp)
transferRNA Ala
PLM3_127_b2_sep16_scaffold_24893_4
CSP1_6_Rokubacteria, Rokubacteria, Bacteria

Not on your lists

3045..4247
DNA (1203bp) protein (401aa)
extracellular ligand-binding receptor; K01999 branched-chain amino acid transport system substrate-binding protein bin=bin7_NC10_sister species=Desulfatibacillum alkenivorans genus=Desulfatibacillum taxon_order=Desulfobacterales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=bin7_NC10_sister organism_group=NC10
extracellular ligand-binding receptor
Tax=CSP1_6_Rokubacteria
PLM3_127_b2_sep16_scaffold_24893_5
GWA2_Rokubacteria_70_23_curated, Rokubacteria, Bacteria

Not on your lists

4255..5109
DNA (855bp) protein (285aa)
Hydrolase, alpha/beta domain protein bin=GWF2_Methylomirabilis_70_14 species=Geobacillus sp. GHH01 genus=Geobacillus taxon_order=Bacillales taxon_class=Bacilli phylum=Firmicutes tax=GWF2_Methylomirabilis_70_14 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
alpha/beta hydrolase fold protein
Tax=GWA2_Rokubacteria_70_23_curated
PLM3_127_b2_sep16_scaffold_24893_6
R_Rokubacteria_68_19, Rokubacteria, Bacteria

Not on your lists

5196..5870
DNA (675bp) protein (225aa)
ABC transporter; K01995 branched-chain amino acid transport system ATP-binding protein bin=bin7_NC10_sister species=Desulfatibacillum alkenivorans genus=Desulfatibacillum taxon_order=Desulfobacterales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=bin7_NC10_sister organism_group=NC10
ABC transporter
Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_68_19_curated
PLM3_127_b2_sep16_scaffold_24893_7
R_Rokubacteria_69_13, Rokubacteria, Bacteria

Not on your lists

5872..6483
DNA (612bp) protein (204aa)
Uncharacterized protein Tax=Massilia timonae CCUG 45783 RepID=K9DP28_9BURK
branched-chain amino acid ABC transporter ATPase
Tax=RIFCSPHIGHO2_02_FULL_Rokubacteria_69_13_curated
PLM3_127_b2_sep16_scaffold_24893_8
RLO_Rokubacteria_71_22, Rokubacteria, Bacteria

Not on your lists

6480..7286
DNA (807bp) protein (269aa)
inner-membrane translocator; K01997 branched-chain amino acid transport system permease protein bin=bin7_NC10_sister species=Desulfatibacillum alkenivorans genus=Desulfatibacillum taxon_order=Desulfobacterales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=bin7_NC10_sister organism_group=NC10
inner-membrane translocator
Tax=RIFCSPLOWO2_12_FULL_Rokubacteria_71_22_curated
Displaying 9 items

View Taxonomy