ggKbase home page

PLM3_127_b2_sep16_scaffold_19873

Search features with annotation key words

Displaying 11 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
PLM3_127_b2_sep16_scaffold_19873_1
RIFCSPLOWO2_12_FULL_Acidobacteria_65_11_curated, Acidobacteria, Bacteria

Not on your lists

1..555
DNA (555bp) protein (185aa)
DNA polymerase III subunit alpha (EC:2.7.7.7); K14162 error-prone DNA polymerase [EC:2.7.7.7] bin=CNBR_ACIDO tax=CNBR_ACIDO organism_group=Acidobacteria organism_desc=why is coverage listed as 1?
dnaE1; DNA polymerase III subunit alpha (EC:2.7.7.7)
Tax=RIFCSPLOWO2_12_FULL_Acidobacteria_65_11_curated
PLM3_127_b2_sep16_scaffold_19873_2
unknown

Not on your lists

1042..1338
DNA (297bp) protein (99aa)

This feature has no annotations

PLM3_127_b2_sep16_scaffold_19873_3
unknown

Not on your lists

2596..2757
DNA (162bp) protein (54aa)

This feature has no annotations

PLM3_127_b2_sep16_scaffold_19873_4
unknown

Not on your lists

2759..3151
DNA (393bp) protein (131aa)

This feature has no annotations

PLM3_127_b2_sep16_scaffold_19873_5

Not on your lists

comp(3126..3566)
DNA (441bp) protein (147aa)
Transposase, IS204/IS1001/IS1096/IS1165 family protein (Fragment) Tax=mine drainage metagenome RepID=T0ZAJ1_9ZZZZ
Transposase, IS204/IS1001/IS1096/IS1165 family protein {ECO:0000313|EMBL:EQD44986.1}; Flags: Fragment;; species="unclassified sequences; metagenomes; ecological metagenomes.;" source="mine drainage metagenome.;"
transposase family protein
PLM3_127_b2_sep16_scaffold_19873_6
CG_Wirth_01, Wirthbacteria, Bacteria

Not on your lists

comp(3889..4071)
DNA (183bp) protein (61aa)
Similar to transposase bin=GWF2_Lentisphaerae_52_8 species=Candidatus Kuenenia stuttgartiensis genus=Candidatus Kuenenia taxon_order=Candidatus Brocadiales taxon_class=Planctomycetia phylum=Planctomycetes tax=GWF2_Lentisphaerae_52_8 organism_group=Lentisphaerae
Tax=CG_Wirth_01
PLM3_127_b2_sep16_scaffold_19873_7
unknown

Not on your lists

4637..5464
DNA (828bp) protein (276aa)

This feature has no annotations

PLM3_127_b2_sep16_scaffold_19873_8
GWA2_Rokubacteria_70_23_curated, Rokubacteria, Bacteria

Not on your lists

5967..6233
DNA (267bp) protein (89aa)
Putative regulatory protein, FmdB bin=GWF2_Methylomirabilis_70_14 species=Candidatus Methylomirabilis oxyfera genus=Candidatus Methylomirabilis taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWF2_Methylomirabilis_70_14 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
regulatory protein, FmdB
Tax=GWA2_Rokubacteria_70_23_curated
PLM3_127_b2_sep16_scaffold_19873_9
GWC2_Rokubacteria_70_16_curated, Rokubacteria, Bacteria

Not on your lists

6223..7206
DNA (984bp) protein (328aa)
Putative uncharacterized protein bin=GWC2_Methylomirabilis_70_16 species=Dehalogenimonas lykanthroporepellens genus=Dehalogenimonas taxon_order=unknown taxon_class=Dehalococcoidia phylum=Chloroflexi tax=GWC2_Methylomirabilis_70_16 organism_group=NC10
hypothetical protein
Tax=GWC2_Rokubacteria_70_16_curated
PLM3_127_b2_sep16_scaffold_19873_10
GWA2_Rokubacteria_70_23_curated, Rokubacteria, Bacteria

Not on your lists

7215..8402
DNA (1188bp) protein (396aa)
Glycosyl transferase group 1 bin=GWC2_Methylomirabilis_70_24 species=Herpetosiphon aurantiacus genus=Herpetosiphon taxon_order=Herpetosiphonales taxon_class=Chloroflexi phylum=Chloroflexi tax=GWC2_Methylomirabilis_70_24 organism_group=NC10 organism_desc=Good
group 1 glycosyl transferase
Tax=GWA2_Rokubacteria_70_23_curated
PLM3_127_b2_sep16_scaffold_19873_11
GWC2_Rokubacteria_70_16_curated, Rokubacteria, Bacteria

Not on your lists

8413..9636
DNA (1224bp) protein (408aa)
Phosphonoacetate hydrolase bin=GWC2_Methylomirabilis_70_16 species=Cupriavidus pinatubonensis genus=Cupriavidus taxon_order=Burkholderiales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=GWC2_Methylomirabilis_70_16 organism_group=NC10
Type I phosphodiesterase/nucleotide pyrophosphatase
Tax=GWC2_Rokubacteria_70_16_curated
Displaying 11 items

View Taxonomy