ggKbase home page

PLM3_127_b2_sep16_scaffold_18720

Search features with annotation key words

Displaying 8 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
PLM3_127_b2_sep16_scaffold_18720_1
CSP1_6_Rokubacteria, Rokubacteria, Bacteria

Not on your lists

2..154
DNA (153bp) protein (51aa)
hypothetical protein bin=bin7_NC10_sister tax=bin7_NC10_sister organism_group=NC10
Tax=CSP1_6_Rokubacteria
PLM3_127_b2_sep16_scaffold_18720_2
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

comp(163..1035)
DNA (873bp) protein (291aa)
(S)-2-hydroxy-acid oxidase bin=GWA2_Methylomirabilis_73_35 species=Verrucosispora maris genus=Verrucosispora taxon_order=Actinomycetales taxon_class=Actinobacteria phylum=Actinobacteria tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
FMN-dependent alpha-hydroxy acid dehydrogenase
Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
PLM3_127_b2_sep16_scaffold_18720_3
RBG_16_Acidobacteria_68_9_curated, Acidobacteria, Bacteria

Not on your lists

comp(1137..2111)
DNA (975bp) protein (325aa)
hypothetical protein Tax=SAR202 cluster bacterium SCGC AAA240-N13 RepID=UPI000371A665
hypothetical protein
Tax=RBG_16_Acidobacteria_68_9_curated
PLM3_127_b2_sep16_scaffold_18720_4
GWA2_Rokubacteria_70_23_curated, Rokubacteria, Bacteria

Not on your lists

2232..2894
DNA (663bp) protein (221aa)
Transcriptional regulator, TetR family bin=GWF2_Methylomirabilis_70_14 species=Burkholderia thailandensis genus=Burkholderia taxon_order=Burkholderiales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=GWF2_Methylomirabilis_70_14 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
bacterial regulatory s, tetR family protein
Tax=GWA2_Rokubacteria_70_23_curated
PLM3_127_b2_sep16_scaffold_18720_5
CSP1_6_Rokubacteria, Rokubacteria, Bacteria

Not on your lists

2887..3267
DNA (381bp) protein (127aa)
apurinic endonuclease Apn1 (EC:3.1.21.2); K01151 deoxyribonuclease IV [EC:3.1.21.2] bin=bin7_NC10_sister species=Roseiflexus castenholzii genus=Roseiflexus taxon_order=Chloroflexales taxon_class=Chloroflexi phylum=Chloroflexi tax=bin7_NC10_sister organism_group=NC10
apurinic endonuclease Apn1 (EC:3.1.21.2)
Tax=CSP1_6_Rokubacteria
PLM3_127_b2_sep16_scaffold_18720_6
Pedosphaera parvula, Pedosphaera, Verrucomicrobiales, Verrucomicrobiae, Verrucomicrobia, Bacteria

Not on your lists

3496..3990
DNA (495bp) protein (165aa)
Uncharacterized protein Tax=Pedosphaera parvula Ellin514 RepID=B9XAR2_9BACT
Uncharacterized protein {ECO:0000313|EMBL:EEF63097.1}; species="Bacteria; Verrucomicrobia; Verrucomicrobiae; Verrucomicrobiales; Verrucomicrobia subdivision 3; Pedosphaera.;" source="Pedosphaera parvula (strain Ellin514).;"
hypothetical protein
PLM3_127_b2_sep16_scaffold_18720_7
R_Acidobacteria_61_28, Acidobacteria, Bacteria

Not on your lists

4399..4749
DNA (351bp) protein (117aa)
Putative uncharacterized protein bin=GWD2_Deltaproteobacteria_55_8 species=Desulfotomaculum kuznetsovii genus=Desulfotomaculum taxon_order=Clostridiales taxon_class=Clostridia phylum=Firmicutes tax=GWD2_Deltaproteobacteria_55_8 organism_group=Deltaproteobacteria
hypothetical protein
Tax=RIFCSPLOWO2_02_FULL_Acidobacteria_61_28_curated
PLM3_127_b2_sep16_scaffold_18720_8
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

4775..5098
DNA (324bp) protein (108aa)
leuD; isopropylmalate isomerase small subunit (EC:4.2.1.33)
3-isopropylmalate dehydratase small subunit bin=GWC2_Methylomirabilis_70_16 species=uncultured microorganism genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWC2_Methylomirabilis_70_16 organism_group=NC10
Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
Displaying 8 items

View Taxonomy