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PLM3-1_200_b2_sep16_scaffold_40

Search features with annotation key words

Displaying items 1-30 of 39 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
PLM3-1_200_b2_sep16_scaffold_40_1
RLO_Deltaproteobacteria_57_22, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(2..847)
DNA (846bp) protein (282aa)
short-chain specific acyl-CoA dehydrogenase (EC:1.3.99.-)
Acyl-CoA dehydrogenase, short-chain specific bin=GWD2_Deltaproteobacteria_55_8 species=Carboxydothermus hydrogenoformans genus=Carboxydothermus taxon_order=Thermoanaerobacterales taxon_class=Clostridia phylum=Firmicutes tax=GWD2_Deltaproteobacteria_55_8 organism_group=Deltaproteobacteria
Tax=RIFCSPLOWO2_12_FULL_Deltaproteobacteria_57_22_curated
PLM3-1_200_b2_sep16_scaffold_40_2
RIFOXYA2_FULL_Deltaproteobacteria_55_11_curated, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(860..3436)
DNA (2577bp) protein (859aa)
Putative uncharacterized protein bin=GWD2_Deltaproteobacteria_55_8 species=Desulfotomaculum kuznetsovii genus=Desulfotomaculum taxon_order=Clostridiales taxon_class=Clostridia phylum=Firmicutes tax=GWD2_Deltaproteobacteria_55_8 organism_group=Deltaproteobacteria
hypothetical protein
Tax=RIFOXYA2_FULL_Deltaproteobacteria_55_11_curated
PLM3-1_200_b2_sep16_scaffold_40_3
RLO_Deltaproteobacteria_57_22, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

3608..5011
DNA (1404bp) protein (468aa)
Putative uncharacterized protein bin=GWD2_Deltaproteobacteria_55_8 species=uncultured Desulfobacterium sp. genus=Desulfobacterium taxon_order=Desulfobacterales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWD2_Deltaproteobacteria_55_8 organism_group=Deltaproteobacteria
peptidase M48 Ste24p
Tax=RIFCSPLOWO2_12_FULL_Deltaproteobacteria_57_22_curated
PLM3-1_200_b2_sep16_scaffold_40_4
RLO_Deltaproteobacteria_60_19, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(5015..5386)
DNA (372bp) protein (124aa)
Putative uncharacterized protein bin=GWD2_Deltaproteobacteria_55_8 species=uncultured bacterium genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWD2_Deltaproteobacteria_55_8 organism_group=Deltaproteobacteria
Tax=RIFCSPLOWO2_12_FULL_Deltaproteobacteria_60_19_curated
PLM3-1_200_b2_sep16_scaffold_40_5
RLO_Deltaproteobacteria_57_22, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

5556..7355
DNA (1800bp) protein (600aa)
PepF/M3 family oligoendopeptidase bin=GWD2_Deltaproteobacteria_55_8 species=uncultured candidate division OP1 bacterium genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWD2_Deltaproteobacteria_55_8 organism_group=Deltaproteobacteria
oligoendopeptidase
Tax=RIFCSPLOWO2_12_FULL_Deltaproteobacteria_57_22_curated
PLM3-1_200_b2_sep16_scaffold_40_6
RIFCSPLOWO2_12_FULL_Acidobacteria_60_22_curated, Acidobacteria, Bacteria

Not on your lists

7407..9089
DNA (1683bp) protein (561aa)
Streptogramin lyase-related protein Tax=Ralstonia solanacearum RepID=B5SDR7_RALSL
vgb; streptogramin lyase-related protein
Tax=RIFCSPLOWO2_12_FULL_Acidobacteria_60_22_curated
PLM3-1_200_b2_sep16_scaffold_40_7
R_Acidobacteria_65_29, Acidobacteria, Bacteria

Not on your lists

comp(9206..10165)
DNA (960bp) protein (320aa)
Putative uncharacterized protein bin=GWA2_Bacteroidetes_32_17 species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWA2_Bacteroidetes_32_17 organism_group=Bacteroidetes
putative oxidoreductase
Tax=RIFCSPLOWO2_02_FULL_Acidobacteria_65_29_curated
PLM3-1_200_b2_sep16_scaffold_40_8

Not on your lists

comp(10180..11103)
DNA (924bp) protein (308aa)
Uncharacterized protein {ECO:0000313|EMBL:KKL70538.1}; species="unclassified sequences; metagenomes; ecological metagenomes.;" source="marine sediment metagenome.;"
Putative uncharacterized protein bin=GWD2_Bacteroidetes_33_33 species=Fluviicola taffensis genus=Fluviicola taxon_order=Flavobacteriales taxon_class=Flavobacteriia phylum=Bacteroidetes tax=GWD2_Bacteroidetes_33_33 organism_group=Bacteroidetes organism_desc=a152
hypothetical protein
PLM3-1_200_b2_sep16_scaffold_40_9
R_Nitrospirae_62_14, Nitrospirae, Bacteria

Not on your lists

11579..11947
DNA (369bp) protein (123aa)
hypothetical protein bin=bin1_lowGC species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=Cyanobacteria tax=bin1_lowGC organism_group=Unknown_CP
hypothetical protein
Tax=RIFCSPLOWO2_02_FULL_Nitrospirae_62_14_curated
PLM3-1_200_b2_sep16_scaffold_40_10
RLO_Deltaproteobacteria_57_22, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

11950..12282
DNA (333bp) protein (111aa)
Uncharacterized protein Tax=Candidatus Methylomirabilis oxyfera RepID=D5MJS4_9BACT
hypothetical protein
Tax=RIFCSPLOWO2_12_FULL_Deltaproteobacteria_57_22_curated
PLM3-1_200_b2_sep16_scaffold_40_11
RLO_Deltaproteobacteria_60_16, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(12309..13751)
DNA (1443bp) protein (481aa)
Amidohydrolase bin=GWD2_Deltaproteobacteria_55_8 species=Sphaerobacter thermophilus genus=Sphaerobacter taxon_order=Sphaerobacterales taxon_class=Thermomicrobia phylum=Chloroflexi tax=GWD2_Deltaproteobacteria_55_8 organism_group=Deltaproteobacteria
amidohydrolase
Tax=RIFCSPLOWO2_12_FULL_Deltaproteobacteria_60_16_curated
PLM3-1_200_b2_sep16_scaffold_40_12
GWD2_Deltaproteobacteria_55_8_curated, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

13960..14664
DNA (705bp) protein (235aa)
Putative uncharacterized protein bin=GWD2_Deltaproteobacteria_55_8 species=Tribolium castaneum genus=Tribolium taxon_order=Coleoptera taxon_class=Insecta phylum=Arthropoda tax=GWD2_Deltaproteobacteria_55_8 organism_group=Deltaproteobacteria
hypothetical protein
Tax=GWD2_Deltaproteobacteria_55_8_curated
PLM3-1_200_b2_sep16_scaffold_40_13
RIFOXYA2_FULL_Deltaproteobacteria_55_11_curated, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

14742..15341
DNA (600bp) protein (200aa)
RNA polymerase, sigma-24 subunit, ECF subfamily bin=GWD2_Deltaproteobacteria_55_8 species=Candidatus Solibacter usitatus genus=Candidatus Solibacter taxon_order=Solibacterales taxon_class=Solibacteres phylum=Acidobacteria tax=GWD2_Deltaproteobacteria_55_8 organism_group=Deltaproteobacteria
ECF subfamily RNA polymerase sigma-24 factor
Tax=RIFOXYA2_FULL_Deltaproteobacteria_55_11_curated
PLM3-1_200_b2_sep16_scaffold_40_14
GWD2_Deltaproteobacteria_55_8_curated, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

15338..15868
DNA (531bp) protein (177aa)
id=1777804 bin=GWD2_Deltaproteobacteria_55_8 species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWD2_Deltaproteobacteria_55_8 organism_group=Deltaproteobacteria
Tax=GWD2_Deltaproteobacteria_55_8_curated
PLM3-1_200_b2_sep16_scaffold_40_15
RLO_Deltaproteobacteria_57_22, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

15865..16101
DNA (237bp) protein (79aa)
id=1777803 bin=GWD2_Deltaproteobacteria_55_8 species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWD2_Deltaproteobacteria_55_8 organism_group=Deltaproteobacteria
Tax=RIFCSPLOWO2_12_FULL_Deltaproteobacteria_57_22_curated
PLM3-1_200_b2_sep16_scaffold_40_16
GWD2_Deltaproteobacteria_55_8_curated, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

16098..16625
DNA (528bp) protein (176aa)
Uncharacterized protein bin=GWD2_Deltaproteobacteria_55_8 species=Geobacter metallireducens genus=Geobacter taxon_order=Desulfuromonadales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWD2_Deltaproteobacteria_55_8 organism_group=Deltaproteobacteria
hypothetical protein
Tax=GWD2_Deltaproteobacteria_55_8_curated
PLM3-1_200_b2_sep16_scaffold_40_17
RLO_Deltaproteobacteria_60_19, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

16627..17970
DNA (1344bp) protein (448aa)
Putative uncharacterized protein bin=GWC2_Methylomirabilis_70_16 species=Cystobacter fuscus genus=Cystobacter taxon_order=Myxococcales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWC2_Methylomirabilis_70_16 organism_group=NC10
hypothetical protein
Tax=RIFCSPLOWO2_12_FULL_Deltaproteobacteria_60_19_curated
PLM3-1_200_b2_sep16_scaffold_40_18
RLO_Deltaproteobacteria_60_19, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

17974..19197
DNA (1224bp) protein (408aa)
Putative uncharacterized protein Tax=uncultured bacterium 89 RepID=E3T681_9BACT
hypothetical protein
Tax=RIFCSPLOWO2_12_FULL_Deltaproteobacteria_60_19_curated
PLM3-1_200_b2_sep16_scaffold_40_19
unknown

Not on your lists

comp(19341..19505)
DNA (165bp) protein (55aa)

This feature has no annotations

PLM3-1_200_b2_sep16_scaffold_40_20
RLO_Deltaproteobacteria_57_22, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

19586..19993
DNA (408bp) protein (136aa)
Tax=RIFCSPLOWO2_12_FULL_Deltaproteobacteria_57_22_curated
PLM3-1_200_b2_sep16_scaffold_40_21
RLO_Deltaproteobacteria_60_16, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(19987..20190)
DNA (204bp) protein (68aa)
DNA-directed RNA polymerase subunit omega bin=GWD2_Deltaproteobacteria_55_8 species=unknown genus=Geobacter taxon_order=Desulfuromonadales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWD2_Deltaproteobacteria_55_8 organism_group=Deltaproteobacteria
DNA-directed RNA polymerase subunit omega
Tax=RIFCSPLOWO2_12_FULL_Deltaproteobacteria_60_16_curated
PLM3-1_200_b2_sep16_scaffold_40_22
RLO_Deltaproteobacteria_57_22, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

20403..21521
DNA (1119bp) protein (373aa)
DegP2 peptidase Tax=Desulfobulbus propionicus (strain ATCC 33891 / DSM 2032 / 1pr3) RepID=E8RI98_DESPD
DegP2 peptidase
Tax=RIFCSPLOWO2_12_FULL_Deltaproteobacteria_57_22_curated
PLM3-1_200_b2_sep16_scaffold_40_23
Sorangium cellulosum, Sorangium, Myxococcales, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(21789..25076)
DNA (3288bp) protein (1096aa)
Uncharacterized protein Tax=Sorangium cellulosum (strain So ce56) RepID=A9GG18_SORC5
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:CAN96264.1}; species="Bacteria; Proteobacteria; Deltaproteobacteria; Myxococcales; Sorangiineae; Polyangiaceae; Sorangium.;" source="Sorangium cellulosum (strain So ce56) (Polyangium cellulosum (strain; So ce56)).;"
PLM3-1_200_b2_sep16_scaffold_40_24
RBG_16_Desulfobacca_60_12_curated, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(25223..26101)
DNA (879bp) protein (293aa)
Tax=RBG_16_Desulfobacca_60_12_curated
PLM3-1_200_b2_sep16_scaffold_40_25
RLO_Deltaproteobacteria_57_22, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(26205..26597)
DNA (393bp) protein (131aa)
Death-on-curing family protein bin=GWD2_Deltaproteobacteria_55_8 species=Candidatus Methylomirabilis oxyfera genus=Candidatus Methylomirabilis taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWD2_Deltaproteobacteria_55_8 organism_group=Deltaproteobacteria
Death-on-curing family protein
Tax=RIFCSPLOWO2_12_FULL_Deltaproteobacteria_57_22_curated
PLM3-1_200_b2_sep16_scaffold_40_26
RLO_Deltaproteobacteria_57_22, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(26600..26827)
DNA (228bp) protein (76aa)
Putative transcriptional regulator, AbrB family bin=GWD2_Deltaproteobacteria_55_8 species=Candidatus Methylomirabilis oxyfera genus=Candidatus Methylomirabilis taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWD2_Deltaproteobacteria_55_8 organism_group=Deltaproteobacteria
transcriptional regulator, AbrB family
Tax=RIFCSPLOWO2_12_FULL_Deltaproteobacteria_57_22_curated
PLM3-1_200_b2_sep16_scaffold_40_27
RIFOXYA2_FULL_Deltaproteobacteria_55_11_curated, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

27063..27419
DNA (357bp) protein (119aa)
NADH-quinone oxidoreductase subunit A 2 Tax=Geobacter RepID=NUOA2_GEOBB
NADH-quinone oxidoreductase
Tax=RIFOXYA2_FULL_Deltaproteobacteria_55_11_curated
PLM3-1_200_b2_sep16_scaffold_40_28
RIFOXYA2_FULL_Deltaproteobacteria_55_11_curated, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

27435..27989
DNA (555bp) protein (185aa)
hypothetical protein Tax=Nitrospina sp. SCGC AAA288-L16 RepID=UPI00036F8F63
hypothetical protein
Tax=RIFOXYA2_FULL_Deltaproteobacteria_55_11_curated
PLM3-1_200_b2_sep16_scaffold_40_29
RLO_Deltaproteobacteria_60_19, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

28064..29206
DNA (1143bp) protein (381aa)
nuoD1; NADH dehydrogenase (ubiquinone) (EC:1.6.5.3)
NADH dehydrogenase I subunit D Tax=uncultured prokaryote RepID=H5SP86_9ZZZZ
Tax=RIFCSPLOWO2_12_FULL_Deltaproteobacteria_60_19_curated
PLM3-1_200_b2_sep16_scaffold_40_30
RLO_Deltaproteobacteria_60_16, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

29208..29681
DNA (474bp) protein (158aa)
nuoE; NADH-quinone oxidoreductase subunit E (EC:1.6.99.5)
NADH-quinone oxidoreductase, subunit E bin=GWD2_Deltaproteobacteria_55_8 species=Desulfurispirillum indicum genus=Desulfurispirillum taxon_order=Chrysiogenales taxon_class=Chrysiogenetes phylum=Chrysiogenetes tax=GWD2_Deltaproteobacteria_55_8 organism_group=Deltaproteobacteria
Tax=RIFCSPLOWO2_12_FULL_Deltaproteobacteria_60_16_curated
Displaying items 1-30 of 39 in total

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