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PLM3-1_200_b2_sep16_scaffold_320

Search features with annotation key words

Displaying 22 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
PLM3-1_200_b2_sep16_scaffold_320_1
RLO_Deltaproteobacteria_60_19, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(2..538)
-----------------
DNA (537bp)
protein (179aa)
Uncharacterized protein family UPF0020 bin=GWD2_Deltaproteobacteria_55_8 species=Nitrosospira sp. APG3 genus=Nitrosospira taxon_order=Nitrosomonadales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=GWD2_Deltaproteobacteria_55_8 organism_group=Deltaproteobacteria
hypothetical protein
Tax=RIFCSPLOWO2_12_FULL_Deltaproteobacteria_60_19_curated
PLM3-1_200_b2_sep16_scaffold_320_2
RLO_Deltaproteobacteria_60_16, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(723..989)
-----------------
DNA (267bp)
protein (89aa)
Tax=RIFCSPLOWO2_12_FULL_Deltaproteobacteria_60_16_curated
PLM3-1_200_b2_sep16_scaffold_320_3
GWD2_Deltaproteobacteria_55_8_curated, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(993..1166)
-----------------
DNA (174bp)
protein (58aa)
Putative uncharacterized protein bin=GWD2_Deltaproteobacteria_55_8 species=Sorangium cellulosum genus=Sorangium taxon_order=Myxococcales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWD2_Deltaproteobacteria_55_8 organism_group=Deltaproteobacteria
Tax=GWD2_Deltaproteobacteria_55_8_curated
PLM3-1_200_b2_sep16_scaffold_320_4
RLO_Deltaproteobacteria_60_16, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(1210..2151)
-----------------
DNA (942bp)
protein (314aa)
Glycosidase bin=GWD2_Deltaproteobacteria_55_8 species=uncultured prokaryote genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWD2_Deltaproteobacteria_55_8 organism_group=Deltaproteobacteria
glycosidase-like protein
Tax=RIFCSPLOWO2_12_FULL_Deltaproteobacteria_60_16_curated
PLM3-1_200_b2_sep16_scaffold_320_5
RLO_Deltaproteobacteria_60_16, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(2148..4436)
-----------------
DNA (2289bp)
protein (763aa)
Glycosyltransferase, group 1 family protein Tax=Leptospira broomii serovar Hurstbridge str. 5399 RepID=T0G995_9LEPT
group 1 glycosyl transferase
Tax=RIFCSPLOWO2_12_FULL_Deltaproteobacteria_60_16_curated
PLM3-1_200_b2_sep16_scaffold_320_trna_2
unknown

Not on your lists

comp(4717..4788)
-----------------
DNA (72bp)
transferRNA Arg
PLM3-1_200_b2_sep16_scaffold_320_6
RIFOXYA2_FULL_Deltaproteobacteria_55_11_curated, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

4898..5746
-----------------
DNA (849bp)
protein (283aa)
4-diphosphocytidyl-2-C-methyl-D-erythritol kinase bin=GWD2_Deltaproteobacteria_55_8 species=Geobacter metallireducens genus=Geobacter taxon_order=Desulfuromonadales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWD2_Deltaproteobacteria_55_8 organism_group=Deltaproteobacteria
ispE; 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase
Tax=RIFOXYA2_FULL_Deltaproteobacteria_55_11_curated
PLM3-1_200_b2_sep16_scaffold_320_7
RLO_Deltaproteobacteria_57_22, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

5793..6104
-----------------
DNA (312bp)
protein (104aa)
Putative septation protein SpoVG bin=GWD2_Deltaproteobacteria_55_8 species=Corallococcus coralloides genus=Corallococcus taxon_order=Myxococcales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWD2_Deltaproteobacteria_55_8 organism_group=Deltaproteobacteria
SpoVG family protein
Tax=RIFCSPLOWO2_12_FULL_Deltaproteobacteria_57_22_curated
PLM3-1_200_b2_sep16_scaffold_320_trna_1
unknown

Not on your lists

6140..6210
-----------------
DNA (71bp)
transferRNA Gln
PLM3-1_200_b2_sep16_scaffold_320_8
RLO_Deltaproteobacteria_60_19, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

6292..7266
-----------------
DNA (975bp)
protein (325aa)
Ribose-phosphate pyrophosphokinase bin=GWD2_Deltaproteobacteria_55_8 species=Thermodesulfatator indicus genus=Thermodesulfatator taxon_order=Thermodesulfobacteriales taxon_class=Thermodesulfobacteria phylum=Thermodesulfobacteria tax=GWD2_Deltaproteobacteria_55_8 organism_group=Deltaproteobacteria
phosphoribosylpyrophosphate synthetase
Tax=RIFCSPLOWO2_12_FULL_Deltaproteobacteria_60_19_curated
PLM3-1_200_b2_sep16_scaffold_320_9
RIFOXYA2_FULL_Deltaproteobacteria_55_11_curated, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists


7273..7938
-----------------
DNA (666bp)
protein (222aa)
50S ribosomal protein L25 bin=GWD2_Deltaproteobacteria_55_8 species=RBG1 genus=RBG1 taxon_order=RBG1 taxon_class=RBG1 phylum=Zixibacteria tax=GWD2_Deltaproteobacteria_55_8 organism_group=Deltaproteobacteria
ribosomal 5S rRNA E-loop binding protein Ctc/L25/TL5
Tax=RIFOXYA2_FULL_Deltaproteobacteria_55_11_curated
PLM3-1_200_b2_sep16_scaffold_320_10
RLO_Deltaproteobacteria_60_16, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

7976..8542
-----------------
DNA (567bp)
protein (189aa)
peptidyl-tRNA hydrolase (EC:3.1.1.29)
Peptidyl-tRNA hydrolase bin=GWD2_Deltaproteobacteria_55_8 species=Pelotomaculum thermopropionicum genus=Pelotomaculum taxon_order=Clostridiales taxon_class=Clostridia phylum=Firmicutes tax=GWD2_Deltaproteobacteria_55_8 organism_group=Deltaproteobacteria
Tax=RIFCSPLOWO2_12_FULL_Deltaproteobacteria_60_16_curated
PLM3-1_200_b2_sep16_scaffold_320_11
RLO_Deltaproteobacteria_60_16, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

8554..10602
-----------------
DNA (2049bp)
protein (683aa)
Putative K(+)-stimulated pyrophosphate-energized sodium pump Tax=Deferribacter desulfuricans (strain DSM 14783 / JCM 11476 / NBRC 101012 / SSM1) RepID=D3PBI4_DEFDS
V-type H(+)-translocating pyrophosphatase
Tax=RIFCSPLOWO2_12_FULL_Deltaproteobacteria_60_16_curated
PLM3-1_200_b2_sep16_scaffold_320_12
RLO_Deltaproteobacteria_60_16, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists


10668..11051
-----------------
DNA (384bp)
protein (128aa)
30S ribosomal protein S6 bin=GWD2_Deltaproteobacteria_55_8 species=Methylococcus capsulatus genus=Methylococcus taxon_order=Methylococcales taxon_class=Gammaproteobacteria phylum=Proteobacteria tax=GWD2_Deltaproteobacteria_55_8 organism_group=Deltaproteobacteria
rpsF; 30S ribosomal protein S6
Tax=RIFCSPLOWO2_12_FULL_Deltaproteobacteria_60_16_curated
PLM3-1_200_b2_sep16_scaffold_320_13
GWD2_Deltaproteobacteria_55_8_curated, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

11083..11454
-----------------
DNA (372bp)
protein (124aa)
Single-stranded DNA-binding protein bin=GWD2_Deltaproteobacteria_55_8 species=Candidatus Nitrospira defluvii genus=Nitrospira taxon_order=Nitrospirales taxon_class=Nitrospira phylum=Nitrospirae tax=GWD2_Deltaproteobacteria_55_8 organism_group=Deltaproteobacteria
ssb; single-stranded DNA-binding protein
Tax=GWD2_Deltaproteobacteria_55_8_curated
PLM3-1_200_b2_sep16_scaffold_320_14
RLO_Deltaproteobacteria_57_22, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists


11475..11771
-----------------
DNA (297bp)
protein (99aa)
30S ribosomal protein S18 bin=GWD2_Deltaproteobacteria_55_8 species=unknown genus=Geobacter taxon_order=Desulfuromonadales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWD2_Deltaproteobacteria_55_8 organism_group=Deltaproteobacteria
30S ribosomal protein S18
Tax=RIFCSPLOWO2_12_FULL_Deltaproteobacteria_57_22_curated
PLM3-1_200_b2_sep16_scaffold_320_15
RLO_Deltaproteobacteria_60_16, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

11798..12748
-----------------
DNA (951bp)
protein (317aa)
Membrane protein DUF2232, putative bin=GWD2_Deltaproteobacteria_55_8 species=Geobacter metallireducens genus=Geobacter taxon_order=Desulfuromonadales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWD2_Deltaproteobacteria_55_8 organism_group=Deltaproteobacteria
membrane protein
Tax=RIFCSPLOWO2_12_FULL_Deltaproteobacteria_60_16_curated
PLM3-1_200_b2_sep16_scaffold_320_16
RLO_Deltaproteobacteria_60_16, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists


12761..13210
-----------------
DNA (450bp)
protein (150aa)
50S ribosomal protein L9 bin=GWD2_Deltaproteobacteria_55_8 species=Caldithrix abyssi genus=Caldithrix taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWD2_Deltaproteobacteria_55_8 organism_group=Deltaproteobacteria
50S ribosomal protein L9
Tax=RIFCSPLOWO2_12_FULL_Deltaproteobacteria_60_16_curated
PLM3-1_200_b2_sep16_scaffold_320_17
unknown

Not on your lists

comp(13381..13578)
-----------------
DNA (198bp)
protein (66aa)

This feature has no annotations

PLM3-1_200_b2_sep16_scaffold_320_18
RBG_16_Gallionellales_57_15_curated, Gallionellales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(13606..15171)
-----------------
DNA (1566bp)
protein (522aa)
hypothetical protein Tax=Verrucomicrobia bacterium SCGC AAA164-E04 RepID=UPI00037A076B
thiol oxidoreductase-like
Tax=RBG_16_Gallionellales_57_15_curated
PLM3-1_200_b2_sep16_scaffold_320_19
RIFOXYA2_FULL_Deltaproteobacteria_55_11_curated, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(15466..16113)
-----------------
DNA (648bp)
protein (216aa)
hypothetical protein Tax=Candidatus Poribacteria sp. WGA-4E RepID=UPI00037B4483
hypothetical protein
Tax=RIFOXYA2_FULL_Deltaproteobacteria_55_11_curated
PLM3-1_200_b2_sep16_scaffold_320_20
RLO_Deltaproteobacteria_60_19, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

16219..16854
-----------------
DNA (636bp)
protein (212aa)
Uncharacterized protein Tax=Haliscomenobacter hydrossis (strain ATCC 27775 / DSM 1100 / LMG 10767 / O) RepID=F4KSV4_HALH1
hypothetical protein
Tax=RIFCSPLOWO2_12_FULL_Deltaproteobacteria_60_19_curated
Displaying 22 items

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