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PLM3-1_200_b2_sep16_scaffold_389

Search features with annotation key words

Displaying items 1-30 of 36 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
PLM3-1_200_b2_sep16_scaffold_389_1
GWD2_Deltaproteobacteria_55_8_curated, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(314..1297)
DNA (984bp) protein (328aa)
ABC-type nitrate/sulfonate/bicarbonate transport system, periplasmic component bin=GWD2_Deltaproteobacteria_55_8 species=Synechococcus sp. PCC 7502 genus=Synechococcus taxon_order=Chroococcales taxon_class=unknown phylum=Cyanobacteria tax=GWD2_Deltaproteobacteria_55_8 organism_group=Deltaproteobacteria
nitrate/sulfonate/bicarbonate ABC transporter substrate-binding protein
Tax=GWD2_Deltaproteobacteria_55_8_curated
PLM3-1_200_b2_sep16_scaffold_389_2
RLO_Deltaproteobacteria_57_22, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

1590..3470
DNA (1881bp) protein (627aa)
UvrABC system protein C bin=GWD2_Deltaproteobacteria_55_8 species=Cystobacter fuscus genus=Cystobacter taxon_order=Myxococcales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWD2_Deltaproteobacteria_55_8 organism_group=Deltaproteobacteria
uvrC; UvrABC system protein C
Tax=RIFCSPLOWO2_12_FULL_Deltaproteobacteria_57_22_curated
PLM3-1_200_b2_sep16_scaffold_389_3
RLO_Deltaproteobacteria_60_19, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

3480..4583
DNA (1104bp) protein (368aa)
Uncharacterized protein bin=GWD2_Deltaproteobacteria_55_8 species=Rhizobium sp. CF080 genus=Rhizobium taxon_order=Rhizobiales taxon_class=Alphaproteobacteria phylum=Proteobacteria tax=GWD2_Deltaproteobacteria_55_8 organism_group=Deltaproteobacteria
Tax=RIFCSPLOWO2_12_FULL_Deltaproteobacteria_60_19_curated
PLM3-1_200_b2_sep16_scaffold_389_4
RLO_Deltaproteobacteria_57_22, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

4622..7039
DNA (2418bp) protein (806aa)
DNA internalization-related competence protein ComEC/Rec2 bin=GWD2_Deltaproteobacteria_55_8 species=Desulfatibacillum alkenivorans genus=Desulfatibacillum taxon_order=Desulfobacterales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWD2_Deltaproteobacteria_55_8 organism_group=Deltaproteobacteria
DNA internalization-related competence protein ComEC/Rec2
Tax=RIFCSPLOWO2_12_FULL_Deltaproteobacteria_57_22_curated
PLM3-1_200_b2_sep16_scaffold_389_5
GWA2_Deltaproteobacteria_65_63_curated, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

7522..7791
DNA (270bp) protein (90aa)
hypothetical protein bin=GWB2_Deltaproteobacteria_65_81 species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWB2_Deltaproteobacteria_65_81 organism_group=Deltaproteobacteria organism_desc=Good +
Tax=GWA2_Deltaproteobacteria_65_63_curated
PLM3-1_200_b2_sep16_scaffold_389_6
unknown

Not on your lists

7941..8141
DNA (201bp) protein (67aa)

This feature has no annotations

PLM3-1_200_b2_sep16_scaffold_389_7
GWF2_Lentisphaerae_38_69_curated, Lentisphaerae, Bacteria

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8334..8735
DNA (402bp) protein (134aa)
Methyltransferase type 11 bin=GWF2_Lentisphaerae_38_69 species=Candidatus Solibacter usitatus genus=Candidatus Solibacter taxon_order=Solibacterales taxon_class=Solibacteres phylum=Acidobacteria tax=GWF2_Lentisphaerae_38_69 organism_group=Lentisphaerae organism_desc=a349
type 11 methyltransferase
Tax=GWF2_Lentisphaerae_38_69_curated
PLM3-1_200_b2_sep16_scaffold_389_8
Rivularia sp. PCC 7116, Rivularia, Nostocales, Cyanobacteria, Bacteria

Not on your lists

8828..9556
DNA (729bp) protein (243aa)
Haloacid dehalogenase superfamily enzyme, subfamily IA Tax=Rivularia sp. PCC 7116 RepID=K9RMS2_9CYAN
haloacid dehalogenase superfamily protein
Haloacid dehalogenase superfamily enzyme, subfamily IA {ECO:0000313|EMBL:AFY58362.1}; species="Bacteria; Cyanobacteria; Nostocales; Rivulariaceae; Rivularia.;" source="Rivularia sp. PCC 7116.;"
PLM3-1_200_b2_sep16_scaffold_389_9
Aeromonas media, Aeromonas, Aeromonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

9661..10104
DNA (444bp) protein (148aa)
Cupin 2 barrel-containing protein Tax=Aeromonas media WS RepID=K2I4T1_AERME
Cupin 2 barrel domain-containing protein
Cupin 2 barrel domain-containing protein {ECO:0000313|EMBL:AHX61032.1}; species="Bacteria; Proteobacteria; Gammaproteobacteria; Aeromonadales; Aeromonadaceae; Aeromonas.;" source="Aeromonas media WS.;"
PLM3-1_200_b2_sep16_scaffold_389_10
Gloeobacter violaceus, Gloeobacter, Gloeobacterales, Gloeobacteria, Cyanobacteria, Bacteria

Not on your lists

10120..10773
DNA (654bp) protein (218aa)
Glr2697 protein Tax=Gloeobacter violaceus (strain PCC 7421) RepID=Q7NH40_GLOVI
glutathione S-transferase
Glr2697 protein {ECO:0000313|EMBL:BAC90638.1}; species="Bacteria; Cyanobacteria; Gloeobacteria; Gloeobacterales; Gloeobacter.;" source="Gloeobacter violaceus (strain PCC 7421).;"
PLM3-1_200_b2_sep16_scaffold_389_11
Nostoc sp. PCC 7524, Nostoc, Nostocales, Cyanobacteria, Bacteria

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10815..11312
DNA (498bp) protein (166aa)
Sortase-like acyltransferase Tax=Nostoc sp. (strain ATCC 29411 / PCC 7524) RepID=K9QXR7_NOSS7
sortase
Sortase-like acyltransferase {ECO:0000313|EMBL:AFY50238.1}; species="Bacteria; Cyanobacteria; Nostocales; Nostocaceae; Nostoc.;" source="Nostoc sp. (strain ATCC 29411 / PCC 7524).;"
PLM3-1_200_b2_sep16_scaffold_389_12
Herminiimonas arsenicoxydans, Herminiimonas, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

11672..12268
DNA (597bp) protein (199aa)
Putative lipase/esterase Tax=Herminiimonas arsenicoxydans RepID=A4G359_HERAR
hypothetical protein
Putative lipase/esterase {ECO:0000313|EMBL:CAL60946.1}; species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Oxalobacteraceae; Herminiimonas.;" source="Herminiimonas arsenicoxydans.;"
PLM3-1_200_b2_sep16_scaffold_389_13
Achromobacter xylosoxidans, Achromobacter, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

12317..12814
DNA (498bp) protein (166aa)
GNAT family acetyltransferase (EC:2.3.1.-)
Acetyltransferase, GNAT family protein 27 {ECO:0000313|EMBL:ADP18941.1}; EC=2.3.1.- {ECO:0000313|EMBL:ADP18941.1};; species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Alcaligenaceae; Achromobacter.;" source="Achromobacter xylosoxidans (strain A8).;"
Acetyltransferase, GNAT family protein 27 Tax=Achromobacter xylosoxidans (strain A8) RepID=E3HF82_ACHXA
PLM3-1_200_b2_sep16_scaffold_389_14
GWA2_Rokubacteria_70_23_curated, Rokubacteria, Bacteria

Not on your lists

12853..14130
DNA (1278bp) protein (426aa)
ATPase bin=GWF2_Methylomirabilis_70_14 species=Thermus thermophilus genus=Thermus taxon_order=Thermales taxon_class=Deinococci phylum=Deinococcus-Thermus tax=GWF2_Methylomirabilis_70_14 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
putative GTP-binding protein
Tax=GWA2_Rokubacteria_70_23_curated
PLM3-1_200_b2_sep16_scaffold_389_15
Pseudothermotoga lettingae, Pseudothermotoga, Thermotogales, Thermotogae, Thermotogae, Bacteria

Not on your lists

14148..14759
DNA (612bp) protein (204aa)
Methyltransferase type 12 Tax=Thermotoga lettingae (strain ATCC BAA-301 / DSM 14385 / TMO) RepID=A8F867_THELT
type 12 methyltransferase
Methyltransferase type 12 {ECO:0000313|EMBL:ABV34351.1}; species="Bacteria; Thermotogae; Thermotogales; Thermotogaceae; Pseudothermotoga.;" source="Pseudothermotoga lettingae (strain ATCC BAA-301 / DSM 14385 / NBRC; 107922 / TMO) (Thermotoga lettingae).;"
PLM3-1_200_b2_sep16_scaffold_389_16
unknown

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14960..16135
DNA (1176bp) protein (392aa)

This feature has no annotations

PLM3-1_200_b2_sep16_scaffold_389_17
RLO_Deltaproteobacteria_60_16, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

16293..18668
DNA (2376bp) protein (792aa)
Outer membrane protein assembly factor BamA bin=GWD2_Deltaproteobacteria_55_8 species=uncultured Desulfobacterium sp. genus=Desulfobacterium taxon_order=Desulfobacterales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWD2_Deltaproteobacteria_55_8 organism_group=Deltaproteobacteria
outer membrane protein assembly complex, YaeT protein
Tax=RIFCSPLOWO2_12_FULL_Deltaproteobacteria_60_16_curated
PLM3-1_200_b2_sep16_scaffold_389_18
RLO_Deltaproteobacteria_57_22, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

18716..19255
DNA (540bp) protein (180aa)
Outer membrane chaperone Skp (OmpH) bin=GWD2_Deltaproteobacteria_55_8 species=Thermodesulfatator indicus genus=Thermodesulfatator taxon_order=Thermodesulfobacteriales taxon_class=Thermodesulfobacteria phylum=Thermodesulfobacteria tax=GWD2_Deltaproteobacteria_55_8 organism_group=Deltaproteobacteria
outer membrane chaperone Skp
Tax=RIFCSPLOWO2_12_FULL_Deltaproteobacteria_57_22_curated
PLM3-1_200_b2_sep16_scaffold_389_19
RLO_Deltaproteobacteria_57_22, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

19252..20346
DNA (1095bp) protein (365aa)
UDP-3-O-acylglucosamine N-acyltransferase bin=GWD2_Deltaproteobacteria_55_8 species=Syntrophus aciditrophicus genus=Syntrophus taxon_order=Syntrophobacterales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWD2_Deltaproteobacteria_55_8 organism_group=Deltaproteobacteria
lpxD; UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase
Tax=RIFCSPLOWO2_12_FULL_Deltaproteobacteria_57_22_curated
PLM3-1_200_b2_sep16_scaffold_389_20
RLO_Deltaproteobacteria_60_16, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

20321..20758
DNA (438bp) protein (146aa)
3-hydroxyacyl-[acyl-carrier-protein] dehydratase FabZ bin=GWD2_Deltaproteobacteria_55_8 species=Candidatus Nitrospira defluvii genus=Nitrospira taxon_order=Nitrospirales taxon_class=Nitrospira phylum=Nitrospirae tax=GWD2_Deltaproteobacteria_55_8 organism_group=Deltaproteobacteria
3-hydroxyacyl-ACP dehydratase
Tax=RIFCSPLOWO2_12_FULL_Deltaproteobacteria_60_16_curated
PLM3-1_200_b2_sep16_scaffold_389_21
RLO_Deltaproteobacteria_60_16, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

20783..21559
DNA (777bp) protein (259aa)
acyl-(acyl-carrier-protein)--UDP-N-acetylglucosamine O-acyltransferase (EC:2.3.1.129)
Acyl-[acyl-carrier-protein]--UDP-N-acetylglucosamine O-acyltransferase bin=GWD2_Deltaproteobacteria_55_8 species=Geobacter uraniireducens genus=Geobacter taxon_order=Desulfuromonadales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWD2_Deltaproteobacteria_55_8 organism_group=Deltaproteobacteria
Tax=RIFCSPLOWO2_12_FULL_Deltaproteobacteria_60_16_curated
PLM3-1_200_b2_sep16_scaffold_389_22
GWD2_Deltaproteobacteria_55_8_curated, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

21617..22432
DNA (816bp) protein (272aa)
Putative uncharacterized protein bin=GWD2_Deltaproteobacteria_55_8 species=Desulfobacca acetoxidans genus=Desulfobacca taxon_order=Syntrophobacterales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWD2_Deltaproteobacteria_55_8 organism_group=Deltaproteobacteria
hypothetical protein
Tax=GWD2_Deltaproteobacteria_55_8_curated
PLM3-1_200_b2_sep16_scaffold_389_23
RLO_Deltaproteobacteria_60_16, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

22435..23385
DNA (951bp) protein (317aa)
Oxidoreductase domain protein bin=GWD2_Deltaproteobacteria_55_8 species=Geobacter metallireducens genus=Geobacter taxon_order=Desulfuromonadales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWD2_Deltaproteobacteria_55_8 organism_group=Deltaproteobacteria
gnnA; UDP-N-acetylglucosamine 3-dehydrogenase, NAD-dependent
Tax=RIFCSPLOWO2_12_FULL_Deltaproteobacteria_60_16_curated
PLM3-1_200_b2_sep16_scaffold_389_24
RLO_Deltaproteobacteria_57_22, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

23396..24586
DNA (1191bp) protein (397aa)
Lipid-A-disaccharide synthase bin=GWD2_Deltaproteobacteria_55_8 species=Geobacter sulfurreducens genus=Geobacter taxon_order=Desulfuromonadales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWD2_Deltaproteobacteria_55_8 organism_group=Deltaproteobacteria
lpxB; lipid A disaccharide synthase
Tax=RIFCSPLOWO2_12_FULL_Deltaproteobacteria_57_22_curated
PLM3-1_200_b2_sep16_scaffold_389_25
GWD2_Deltaproteobacteria_55_8_curated, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

24888..26537
DNA (1650bp) protein (550aa)
Lipid A export ATP-binding/permease protein MsbA bin=GWD2_Deltaproteobacteria_55_8 species=Syntrophus aciditrophicus genus=Syntrophus taxon_order=Syntrophobacterales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWD2_Deltaproteobacteria_55_8 organism_group=Deltaproteobacteria
phospholipid-lipopolysaccharide ABC transporter
Tax=GWD2_Deltaproteobacteria_55_8_curated
PLM3-1_200_b2_sep16_scaffold_389_26
RLO_Deltaproteobacteria_57_22, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

26541..27830
DNA (1290bp) protein (430aa)
kdtA; 3-deoxy-D-manno-octulosonic-acid transferase (EC:2.-.-.-)
3-deoxy-D-manno-octulosonic-acid transferase (KDO transferase) bin=GWD2_Deltaproteobacteria_55_8 species=Candidatus Methylomirabilis oxyfera genus=Candidatus Methylomirabilis taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWD2_Deltaproteobacteria_55_8 organism_group=Deltaproteobacteria
Tax=RIFCSPLOWO2_12_FULL_Deltaproteobacteria_57_22_curated
PLM3-1_200_b2_sep16_scaffold_389_27
RLO_Deltaproteobacteria_57_22, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

27894..29000
DNA (1107bp) protein (369aa)
tetraacyldisaccharide 4'-kinase (EC:2.7.1.130)
Tetraacyldisaccharide 4'-kinase bin=GWC2_Deltaproteobacteria_55_46 species=Nitrospina gracilis genus=Nitrospina taxon_order=Nitrospinales taxon_class=Nitrospinia phylum=Nitrospinae tax=GWC2_Deltaproteobacteria_55_46 organism_group=Deltaproteobacteria organism_desc=Clade sibling to the Geobacter/Pelobacter
Tax=RIFCSPLOWO2_12_FULL_Deltaproteobacteria_57_22_curated
PLM3-1_200_b2_sep16_scaffold_389_28
GWD2_Deltaproteobacteria_55_8_curated, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

29017..29622
DNA (606bp) protein (202aa)
D,D-heptose 1,7-bisphosphate phosphatase bin=GWD2_Deltaproteobacteria_55_8 species=Anaerobaculum mobile genus=Anaerobaculum taxon_order=Synergistales taxon_class=Synergistia phylum=Synergistetes tax=GWD2_Deltaproteobacteria_55_8 organism_group=Deltaproteobacteria
histidinol-phosphate phosphatase family protein
Tax=GWD2_Deltaproteobacteria_55_8_curated
PLM3-1_200_b2_sep16_scaffold_389_29
GWD2_Deltaproteobacteria_55_8_curated, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

29638..30591
DNA (954bp) protein (318aa)
NAD-dependent epimerase/dehydratase bin=GWD2_Deltaproteobacteria_55_8 species=Thermobaculum terrenum genus=Thermobaculum taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWD2_Deltaproteobacteria_55_8 organism_group=Deltaproteobacteria
NAD-dependent epimerase/dehydratase
Tax=GWD2_Deltaproteobacteria_55_8_curated
PLM3-1_200_b2_sep16_scaffold_389_30
unknown

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30941..31576
DNA (636bp) protein (212aa)

This feature has no annotations

Displaying items 1-30 of 36 in total

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