ggKbase home page

PLM1_100_b1_sep16_scaffold_5722

Search features with annotation key words

Displaying 25 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
PLM1_100_b1_sep16_scaffold_5722_1
Patulibacter medicamentivorans, Patulibacter, Solirubrobacterales, Thermoleophilia, Actinobacteria, Bacteria

Not on your lists

comp(1..615)
-----------------
DNA (615bp)
protein (205aa)
tRNA pseudouridine synthase A {ECO:0000256|HAMAP-Rule:MF_00171}; EC=5.4.99.12 {ECO:0000256|HAMAP-Rule:MF_00171};; tRNA pseudouridine(38-40) synthase {ECO:0000256|HAMAP-Rule:MF_00171}; tRNA pseudouridylate synthase I {ECO:0000256|HAMAP-Rule:MF_00171}; tRNA-uridine isomerase I {ECO:0000256|HAMAP-Rule:MF_00171}; species="Bacteria; Actinobacteria; Thermoleophilia; Solirubrobacterales; Patulibacteraceae; Patulibacter.;" source="Patulibacter medicamentivorans.;"
tRNA pseudouridine synthase A Tax=Patulibacter medicamentivorans RepID=H0E8R9_9ACTN
tRNA pseudouridine(38-40) synthase
PLM1_100_b1_sep16_scaffold_5722_2
Bradyrhizobium sp. STM 3809, Bradyrhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

641..970
-----------------
DNA (330bp)
protein (110aa)
Putative transcriptional regulatory protein, Ars family Tax=Bradyrhizobium sp. STM 3809 RepID=H0T614_9BRAD
Putative transcriptional regulatory protein, Ars family {ECO:0000313|EMBL:CCE01891.1}; species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bradyrhizobium.;" source="Bradyrhizobium sp. STM 3809.;"
putative transcriptional regulatory protein, Ars family
PLM1_100_b1_sep16_scaffold_5722_3
RBG_16_Euryarchaeota_67_27_curated, Euryarchaeota, Archaea

Not on your lists

984..1430
-----------------
DNA (447bp)
protein (149aa)
hypothetical protein Tax=Kribbella catacumbae RepID=UPI00037336DB
hypothetical protein
Tax=RBG_16_Euryarchaeota_67_27_curated
PLM1_100_b1_sep16_scaffold_5722_4
RBG_16_Actinobacteria_64_13_curated, Rubrobacteria, Actinobacteria, Bacteria

Not on your lists


comp(1438..1830)
-----------------
DNA (393bp)
protein (131aa)
50S ribosomal protein L17 Tax=Amorphus coralli RepID=UPI0003796409
50S ribosomal protein L17
Tax=RBG_16_Actinobacteria_64_13_curated
PLM1_100_b1_sep16_scaffold_5722_5
Conexibacter woesei, Conexibacter, Solirubrobacterales, Thermoleophilia, Actinobacteria, Bacteria

Not on your lists

comp(1834..2790)
-----------------
DNA (957bp)
protein (319aa)
DNA-directed RNA polymerase subunit alpha {ECO:0000256|HAMAP-Rule:MF_00059}; Short=RNAP subunit alpha {ECO:0000256|HAMAP-Rule:MF_00059};; EC=2.7.7.6 {ECO:0000256|HAMAP-Rule:MF_00059};; RNA polymerase subunit alpha {ECO:0000256|HAMAP-Rule:MF_00059}; Transcriptase subunit alpha {ECO:0000256|HAMAP-Rule:MF_00059}; species="Bacteria; Actinobacteria; Thermoleophilia; Solirubrobacterales; Conexibacteraceae; Conexibacter.;" source="Conexibacter woesei (strain DSM 14684 / JCM 11494 / NBRC 100937 /; ID131577).;"
DNA-directed RNA polymerase subunit alpha Tax=Conexibacter woesei (strain DSM 14684 / JCM 11494 / NBRC 100937 / ID131577) RepID=D3EYS1_CONWI
DNA-directed RNA polymerase subunit alpha
PLM1_100_b1_sep16_scaffold_5722_6
RBG_16_Actinobacteria_68_12_curated, Actinobacteria, Bacteria

Not on your lists


comp(2832..3452)
-----------------
DNA (621bp)
protein (207aa)
30S ribosomal protein S4 Tax=Kyrpidia tusciae (strain DSM 2912 / NBRC 15312 / T2) RepID=D5WS74_KYRT2
30S ribosomal protein S4
Tax=RBG_16_Actinobacteria_68_12_curated
PLM1_100_b1_sep16_scaffold_5722_7
RBG_16_Actinobacteria_68_12_curated, Actinobacteria, Bacteria

Not on your lists


comp(3452..3856)
-----------------
DNA (405bp)
protein (135aa)
30S ribosomal protein S11 Tax=Conexibacter woesei (strain DSM 14684 / JCM 11494 / NBRC 100937 / ID131577) RepID=D3EYS0_CONWI
30S ribosomal protein S11
Tax=RBG_16_Actinobacteria_68_12_curated
PLM1_100_b1_sep16_scaffold_5722_8
RBG_16_Actinobacteria_68_12_curated, Actinobacteria, Bacteria

Not on your lists


comp(3857..4240)
-----------------
DNA (384bp)
protein (128aa)
30S ribosomal protein S13 Tax=Desulfotomaculum hydrothermale Lam5 = DSM 18033 RepID=K8DYC3_9FIRM
30S ribosomal protein S13
Tax=RBG_16_Actinobacteria_68_12_curated
PLM1_100_b1_sep16_scaffold_5722_9
RBG_16_Actinobacteria_68_12_curated, Actinobacteria, Bacteria

Not on your lists

comp(4388..5152)
-----------------
DNA (765bp)
protein (255aa)
Methionine aminopeptidase Tax=Conexibacter woesei (strain DSM 14684 / JCM 11494 / NBRC 100937 / ID131577) RepID=D3EYR7_CONWI
methionine aminopeptidase
Tax=RBG_16_Actinobacteria_68_12_curated
PLM1_100_b1_sep16_scaffold_5722_10
Halothece sp. PCC 7418, Halothece, Chroococcales, Oscillatoriophycideae, Cyanobacteria, Bacteria

Not on your lists

comp(5149..5733)
-----------------
DNA (585bp)
protein (195aa)
adenylate kinase (EC:2.7.4.3)
Adenylate kinase {ECO:0000256|HAMAP-Rule:MF_00235, ECO:0000256|RuleBase:RU003331}; Short=AK {ECO:0000256|HAMAP-Rule:MF_00235};; EC=2.7.4.3 {ECO:0000256|HAMAP-Rule:MF_00235, ECO:0000256|RuleBase:RU003331};; ATP-AMP transphosphorylase {ECO:0000256|HAMAP-Rule:MF_00235}; ATP:AMP phosphotransferase {ECO:0000256|HAMAP-Rule:MF_00235}; Adenylate monophosphate kinase {ECO:0000256|HAMAP-Rule:MF_00235}; species="Bacteria; Cyanobacteria; Oscillatoriophycideae; Chroococcales; Halothece cluster; Halothece.;" source="Halothece sp. (strain PCC 7418) (Synechococcus sp. (strain PCC 7418)).;"
Adenylate kinase Tax=Halothece sp. (strain PCC 7418) RepID=K9YGR4_HALP7
PLM1_100_b1_sep16_scaffold_5722_11
Patulibacter medicamentivorans, Patulibacter, Solirubrobacterales, Thermoleophilia, Actinobacteria, Bacteria

Not on your lists


comp(5763..6785)
-----------------
DNA (1023bp)
protein (341aa)
preprotein translocase subunit SecY Tax=Patulibacter americanus RepID=UPI0003B4E342
Protein translocase subunit SecY {ECO:0000256|HAMAP-Rule:MF_01465}; species="Bacteria; Actinobacteria; Thermoleophilia; Solirubrobacterales; Patulibacteraceae; Patulibacter.;" source="Patulibacter medicamentivorans.;"
preprotein translocase subunit SecY
PLM1_100_b1_sep16_scaffold_5722_12
Conexibacter woesei, Conexibacter, Solirubrobacterales, Thermoleophilia, Actinobacteria, Bacteria

Not on your lists


comp(6859..7524)
-----------------
DNA (666bp)
protein (222aa)
50S ribosomal protein L15 Tax=Conexibacter woesei (strain DSM 14684 / JCM 11494 / NBRC 100937 / ID131577) RepID=D3EYR4_CONWI
50S ribosomal protein L15
50S ribosomal protein L15 {ECO:0000256|HAMAP-Rule:MF_01341, ECO:0000256|RuleBase:RU003889}; species="Bacteria; Actinobacteria; Thermoleophilia; Solirubrobacterales; Conexibacteraceae; Conexibacter.;" source="Conexibacter woesei (strain DSM 14684 / JCM 11494 / NBRC 100937 /; ID131577).;"
PLM1_100_b1_sep16_scaffold_5722_13
RBG_16_Actinobacteria_68_12_curated, Actinobacteria, Bacteria

Not on your lists


comp(7524..7703)
-----------------
DNA (180bp)
protein (60aa)
50S ribosomal protein L30 bin=GWF2_Bacteroidetes_42_66 species=Polaribacter sp. MED152 genus=Polaribacter taxon_order=Flavobacteriales taxon_class=Flavobacteriia phylum=Bacteroidetes tax=GWF2_Bacteroidetes_42_66 organism_group=Bacteroidetes organism_desc=a73
50S ribosomal protein L30
Tax=RBG_16_Actinobacteria_68_12_curated
PLM1_100_b1_sep16_scaffold_5722_14
Conexibacter woesei, Conexibacter, Solirubrobacterales, Thermoleophilia, Actinobacteria, Bacteria

Not on your lists


comp(7672..8256)
-----------------
DNA (585bp)
protein (195aa)
30S ribosomal protein S5 Tax=Conexibacter woesei (strain DSM 14684 / JCM 11494 / NBRC 100937 / ID131577) RepID=D3FEW2_CONWI
30S ribosomal protein S5
30S ribosomal protein S5 {ECO:0000256|HAMAP-Rule:MF_01307}; species="Bacteria; Actinobacteria; Thermoleophilia; Solirubrobacterales; Conexibacteraceae; Conexibacter.;" source="Conexibacter woesei (strain DSM 14684 / JCM 11494 / NBRC 100937 /; ID131577).;"
PLM1_100_b1_sep16_scaffold_5722_15
RBG_16_Actinobacteria_68_12_curated, Actinobacteria, Bacteria

Not on your lists


comp(8423..8779)
-----------------
DNA (357bp)
protein (119aa)
50S ribosomal protein L18 Tax=Streptococcus merionis RepID=UPI0003702BFA
rplR; 50S ribosomal protein L18
Tax=RBG_16_Actinobacteria_68_12_curated
PLM1_100_b1_sep16_scaffold_5722_16
RBG_16_Actinobacteria_68_12_curated, Actinobacteria, Bacteria

Not on your lists


comp(8783..9316)
-----------------
DNA (534bp)
protein (178aa)
50S ribosomal protein L6 Tax=Conexibacter woesei (strain DSM 14684 / JCM 11494 / NBRC 100937 / ID131577) RepID=D3FEW0_CONWI
50S ribosomal protein L6
Tax=RBG_16_Actinobacteria_68_12_curated
PLM1_100_b1_sep16_scaffold_5722_17
RBG_16_Actinobacteria_68_12_curated, Actinobacteria, Bacteria

Not on your lists


comp(9354..9749)
-----------------
DNA (396bp)
protein (132aa)
30S ribosomal protein S8 Tax=Nesterenkonia alba RepID=UPI0003B67E77
30S ribosomal protein S8
Tax=RBG_16_Actinobacteria_68_12_curated
PLM1_100_b1_sep16_scaffold_5722_18
Streptomyces mobaraensis, Streptomyces, Streptomycetales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists


comp(9752..9937)
-----------------
DNA (186bp)
protein (62aa)
30S ribosomal protein S14 type Z Tax=Streptomyces mobaraensis NBRC 13819 = DSM 40847 RepID=M3A2N2_STRMB
30S ribosomal protein S14
30S ribosomal protein S14 type Z {ECO:0000256|HAMAP-Rule:MF_01364, ECO:0000256|SAAS:SAAS00014984}; species="Bacteria; Actinobacteria; Streptomycetales; Streptomycetaceae; Streptomyces.;" source="Streptomyces mobaraensis NBRC 13819 = DSM 40847.;"
PLM1_100_b1_sep16_scaffold_5722_19
RBG_16_Actinobacteria_68_12_curated, Actinobacteria, Bacteria

Not on your lists


comp(9949..10566)
-----------------
DNA (618bp)
protein (206aa)
50S ribosomal protein L5 bin=GWF1_Spirochaetes_51_8 species=unknown genus=unknown taxon_order=Bacillales taxon_class=Bacilli phylum=Firmicutes tax=GWF1_Spirochaetes_51_8 organism_group=Spirochaetes organism_desc=Novel clade
50S ribosomal protein L5
Tax=RBG_16_Actinobacteria_68_12_curated
PLM1_100_b1_sep16_scaffold_5722_20
RBG_16_Actinobacteria_68_12_curated, Actinobacteria, Bacteria

Not on your lists


comp(10566..10937)
-----------------
DNA (372bp)
protein (124aa)
50S ribosomal protein L24 Tax=Thermotoga sp. EMP RepID=J9H050_9THEM
rplX; 50S ribosomal protein L24
Tax=RBG_16_Actinobacteria_68_12_curated
PLM1_100_b1_sep16_scaffold_5722_21
RBG_16_Actinobacteria_68_12_curated, Actinobacteria, Bacteria

Not on your lists


comp(10940..11308)
-----------------
DNA (369bp)
protein (123aa)
50S ribosomal protein L14 Tax=Patulibacter medicamentivorans RepID=H0E8Q0_9ACTN
50S ribosomal protein L14
Tax=RBG_16_Actinobacteria_68_12_curated
PLM1_100_b1_sep16_scaffold_5722_22
RBG_16_Actinobacteria_68_12_curated, Actinobacteria, Bacteria

Not on your lists


comp(11316..12218)
-----------------
DNA (903bp)
protein (301aa)
PT repeat family protein (Fragment) Tax=Byssochlamys spectabilis (strain No. 5 / NBRC 109023) RepID=V5FJ52_BYSSN
DEAD/DEAH box helicase
Tax=RBG_16_Actinobacteria_68_12_curated
PLM1_100_b1_sep16_scaffold_5722_23
Thermaerobacter marianensis, Thermaerobacter, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists


comp(12222..12431)
-----------------
DNA (210bp)
protein (70aa)
50S ribosomal protein L29 Tax=Thermaerobacter marianensis (strain ATCC 700841 / DSM 12885 / JCM 10246 / 7p75a) RepID=E6SKZ2_THEM7
50S ribosomal protein L29
50S ribosomal protein L29 {ECO:0000256|HAMAP-Rule:MF_00374}; species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiales Family XVII. Incertae Sedis; Thermaerobacter.;" source="Thermaerobacter marianensis (strain ATCC 700841 / DSM 12885 / JCM; 10246 / 7p75a).;"
PLM1_100_b1_sep16_scaffold_5722_24
RBG_16_Actinobacteria_68_12_curated, Actinobacteria, Bacteria

Not on your lists


comp(12415..12846)
-----------------
DNA (432bp)
protein (144aa)
50S ribosomal protein L16 Tax=Thermincola potens (strain JR) RepID=D5XA90_THEPJ
50S ribosomal protein L16
Tax=RBG_16_Actinobacteria_68_12_curated
PLM1_100_b1_sep16_scaffold_5722_25
unknown

Not on your lists

comp(12846..12995)
-----------------
DNA (150bp)
protein (50aa)

This feature has no annotations

Displaying 25 items

View Taxonomy