ggKbase home page

PLM1_100_b1_sep16_scaffold_13917

Search features with annotation key words

Displaying 13 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
PLM1_100_b1_sep16_scaffold_13917_1
RBG_16_Actinobacteria_68_12_curated, Actinobacteria, Bacteria

Not on your lists

2..172
-----------------
DNA (171bp)
protein (57aa)
Tax=RBG_16_Actinobacteria_68_12_curated
PLM1_100_b1_sep16_scaffold_13917_2
unknown

Not on your lists

169..321
-----------------
DNA (153bp)
protein (51aa)

This feature has no annotations

PLM1_100_b1_sep16_scaffold_13917_3
Ammonifex degensii, Ammonifex, Thermoanaerobacterales, Clostridia, Firmicutes, Bacteria

Not on your lists

321..1601
-----------------
DNA (1281bp)
protein (427aa)
hemA; glutamyl-tRNA reductase (EC:1.2.1.70)
Glutamyl-tRNA reductase {ECO:0000256|HAMAP-Rule:MF_00087, ECO:0000256|RuleBase:RU000584}; Short=GluTR {ECO:0000256|HAMAP-Rule:MF_00087};; EC=1.2.1.70 {ECO:0000256|HAMAP-Rule:MF_00087, ECO:0000256|RuleBase:RU000584};; species="Bacteria; Firmicutes; Clostridia; Thermoanaerobacterales; Thermoanaerobacteraceae; Moorella group; Ammonifex.;" source="Ammonifex degensii (strain DSM 10501 / KC4).;"
Glutamyl-tRNA reductase Tax=Ammonifex degensii (strain DSM 10501 / KC4) RepID=C9R7U1_AMMDK
PLM1_100_b1_sep16_scaffold_13917_4
RLO_PLX_64_10, Bacteria

Not on your lists

1573..2406
-----------------
DNA (834bp)
protein (278aa)
hemC; porphobilinogen deaminase (EC:2.5.1.61)
Porphobilinogen deaminase Tax=Roseiflexus castenholzii (strain DSM 13941 / HLO8) RepID=HEM3_ROSCS
Tax=RIFCSPLOWO2_12_FULL_PLX_64_10_curated
PLM1_100_b1_sep16_scaffold_13917_5
Skermanella stibiiresistens, Skermanella, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

2403..3071
-----------------
DNA (669bp)
protein (223aa)
Uroporphyrinogen III synthase HEM4 Tax=Sulfurihydrogenibium sp. (strain YO3AOP1) RepID=B2V748_SULSY
Uroporphyrinogen III synthase {ECO:0000313|EMBL:EWY40527.1}; species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Rhodospirillaceae; Skermanella.;" source="Skermanella stibiiresistens SB22.;"
hemD; uroporphyrinogen-III synthase
PLM1_100_b1_sep16_scaffold_13917_6
RBG_16_Actinobacteria_68_12_curated, Actinobacteria, Bacteria

Not on your lists

3116..3547
-----------------
DNA (432bp)
protein (144aa)
Uncharacterized protein Tax=Rhodococcus sp. JVH1 RepID=J2J206_9NOCA
hypothetical protein
Tax=RBG_16_Actinobacteria_68_12_curated
PLM1_100_b1_sep16_scaffold_13917_7
RBG_16_Actinobacteria_68_12_curated, Actinobacteria, Bacteria

Not on your lists

3559..4386
-----------------
DNA (828bp)
protein (276aa)
Uncharacterized protein Tax=Nitrolancetus hollandicus Lb RepID=I4EEN4_9CHLR
hypothetical protein
Tax=RBG_16_Actinobacteria_68_12_curated
PLM1_100_b1_sep16_scaffold_13917_8
unknown

Not on your lists

comp(4237..4707)
-----------------
DNA (471bp)
protein (157aa)

This feature has no annotations

PLM1_100_b1_sep16_scaffold_13917_9
RBG_16_RIF03_38_10_curated, RIF03, Bacteria

Not on your lists

comp(4735..5064)
-----------------
DNA (330bp)
protein (110aa)
Tax=RBG_16_RIF03_38_10_curated
PLM1_100_b1_sep16_scaffold_13917_10
Nesterenkonia sp. AN1, Nesterenkonia, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

5680..5862
-----------------
DNA (183bp)
protein (61aa)
permease Tax=Nesterenkonia alba RepID=UPI0003B779B0
Permease {ECO:0000313|EMBL:EXF24699.1}; species="Bacteria; Actinobacteria; Micrococcales; Micrococcaceae; Nesterenkonia.;" source="Nesterenkonia sp. AN1.;"
xanthine/uracil/vitamin C permease
PLM1_100_b1_sep16_scaffold_13917_11
RBG_16_Actinobacteria_68_12_curated, Actinobacteria, Bacteria

Not on your lists

comp(5859..6119)
-----------------
DNA (261bp)
protein (87aa)
Uncharacterized protein Tax=Isosphaera pallida (strain ATCC 43644 / DSM 9630 / IS1B) RepID=E8QX29_ISOPI bin=16ft_combo_ws3_JS1 species=Isosphaera pallida genus=Isosphaera taxon_order=Planctomycetales taxon_class=Planctomycetia phylum=Planctomycetes tax=16ft_combo_ws3_JS1 organism_group=Unknown_CP organism_desc=Cant place firmly withiin either WS3 or JS1. Part of a large Rifle clade
hypothetical protein
Tax=RBG_16_Actinobacteria_68_12_curated
PLM1_100_b1_sep16_scaffold_13917_trna_1
unknown

Not on your lists

comp(6257..6329)
-----------------
DNA (73bp)
transferRNA Phe
PLM1_100_b1_sep16_scaffold_13917_12
Acidobacterium capsulatum, Acidobacterium, Acidobacteriales, Acidobacteriia, Acidobacteria, Bacteria

Not on your lists

6360..7184
-----------------
DNA (825bp)
protein (275aa)
rocF; arginase (EC:3.5.3.1)
Arginase {ECO:0000256|RuleBase:RU361159}; EC=3.5.3.1 {ECO:0000256|RuleBase:RU361159};; species="Bacteria; Acidobacteria; Acidobacteriales; Acidobacteriaceae; Acidobacterium.;" source="Acidobacterium capsulatum (strain ATCC 51196 / DSM 11244 / JCM 7670 /; NBRC 15755 / NCIMB 13165 / 161).;"
Arginase Tax=Acidobacterium capsulatum (strain ATCC 51196 / DSM 11244 / JCM 7670) RepID=C1F9P6_ACIC5
Displaying 13 items

View Taxonomy