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PLM1_100_b1_sep16_scaffold_4025

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Displaying 16 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
PLM1_100_b1_sep16_scaffold_4025_1
Intrasporangium oryzae, Intrasporangium, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

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comp(3..263)
-----------------
DNA (261bp)
protein (87aa)
RNA-splicing ligase RtcB {ECO:0000256|RuleBase:RU371113}; EC=6.5.1.- {ECO:0000256|RuleBase:RU371113};; species="Bacteria; Actinobacteria; Micrococcales; Intrasporangiaceae; Intrasporangium.;" source="Intrasporangium oryzae NRRL B-24470.;"
hypothetical protein Tax=Terracoccus sp. 273MFTsu3.1 RepID=UPI0003749F84
PLM1_100_b1_sep16_scaffold_4025_2
Terrabacter sp. 28, Terrabacter, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

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comp(254..1234)
-----------------
DNA (981bp)
protein (327aa)
hypothetical protein Tax=Terracoccus sp. 273MFTsu3.1 RepID=UPI000373CBBD
Uncharacterized protein {ECO:0000313|EMBL:KJK10453.1}; species="Bacteria; Actinobacteria; Micrococcales; Intrasporangiaceae; Terrabacter.;" source="Terrabacter sp. 28.;"
PLM1_100_b1_sep16_scaffold_4025_3
Intrasporangium oryzae, Intrasporangium, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(1234..2427)
-----------------
DNA (1194bp)
protein (398aa)
second mannosyl transferase (EC:2.-.-.-)
hypothetical protein Tax=Kribbella catacumbae RepID=UPI000372D839
Mannosyl transferase {ECO:0000313|EMBL:EWT01724.1}; species="Bacteria; Actinobacteria; Micrococcales; Intrasporangiaceae; Intrasporangium.;" source="Intrasporangium oryzae NRRL B-24470.;"
PLM1_100_b1_sep16_scaffold_4025_4
unknown

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comp(2424..3779)
-----------------
DNA (1356bp)
protein (452aa)

This feature has no annotations

PLM1_100_b1_sep16_scaffold_4025_5
Frankia symbiont of Datisca glomerata, Frankia, Frankiales, Actinobacteria, Actinobacteria, Bacteria

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comp(3901..4620)
-----------------
DNA (720bp)
protein (240aa)
Sugar transferase Tax=Frankia symbiont subsp. Datisca glomerata RepID=F8B0G2_FRADG
sugar transferase
Sugar transferase {ECO:0000313|EMBL:AEH09711.1}; species="Bacteria; Actinobacteria; Frankiales; Frankiaceae; Frankia.;" source="Frankia symbiont subsp. Datisca glomerata.;"
PLM1_100_b1_sep16_scaffold_4025_6
Methanofollis liminatans, Methanofollis, Methanomicrobiales, Methanomicrobia, Euryarchaeota, Archaea

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comp(4723..5973)
-----------------
DNA (1251bp)
protein (417aa)
DegT/DnrJ/EryC1/StrS aminotransferase Tax=Methanofollis liminatans DSM 4140 RepID=J0RX68_9EURY
DegT/DnrJ/EryC1/StrS aminotransferase {ECO:0000313|EMBL:EJG06121.1}; species="Archaea; Euryarchaeota; Methanomicrobia; Methanomicrobiales; Methanomicrobiaceae; Methanofollis.;" source="Methanofollis liminatans DSM 4140.;"
yfbE; hypothetical protein
PLM1_100_b1_sep16_scaffold_4025_7
RBG_16_Actinobacteria_68_12_curated, Actinobacteria, Bacteria

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comp(5994..6674)
-----------------
DNA (681bp)
protein (227aa)
LuxR family transcriptional regulator Tax=Actinomadura madurae LIID-AJ290 RepID=U2N0E4_9ACTO
LuxR family two component transcriptional regulator
Tax=RBG_16_Actinobacteria_68_12_curated
PLM1_100_b1_sep16_scaffold_4025_8
Myxococcus fulvus, Myxococcus, Myxococcales, Deltaproteobacteria, Proteobacteria, Bacteria

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comp(7174..7653)
-----------------
DNA (480bp)
protein (160aa)
Uncharacterized protein Tax=Myxococcus fulvus (strain ATCC BAA-855 / HW-1) RepID=F8CG25_MYXFH
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AEI66194.1}; species="Bacteria; Proteobacteria; Deltaproteobacteria; Myxococcales; Cystobacterineae; Myxococcaceae; Myxococcus.;" source="Myxococcus fulvus (strain ATCC BAA-855 / HW-1).;"
PLM1_100_b1_sep16_scaffold_4025_9
Streptomyces violaceusniger, Streptomyces, Streptomycetales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(7688..8434)
-----------------
DNA (747bp)
protein (249aa)
Two component transcriptional regulator, LuxR family Tax=Streptomyces violaceusniger Tu 4113 RepID=G2PAA0_STRVO
LuxR family two component transcriptional regulator
Two component transcriptional regulator, LuxR family {ECO:0000313|EMBL:AEM80909.1}; species="Bacteria; Actinobacteria; Streptomycetales; Streptomycetaceae; Streptomyces.;" source="Streptomyces violaceusniger Tu 4113.;"
PLM1_100_b1_sep16_scaffold_4025_10
Actinoplanes friuliensis, Actinoplanes, Micromonosporales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(8465..8839)
-----------------
DNA (375bp)
protein (125aa)
Anti-sigma-factor antagonist Tax=Actinoplanes friuliensis DSM 7358 RepID=U5VSH8_9ACTO
anti-sigma-factor antagonist
Anti-sigma factor antagonist {ECO:0000256|RuleBase:RU003749}; species="Bacteria; Actinobacteria; Micromonosporales; Micromonosporaceae; Actinoplanes.;" source="Actinoplanes friuliensis DSM 7358.;"
PLM1_100_b1_sep16_scaffold_4025_11
R_Saccharibacteria_45_15, Candidatus Saccharibacteria, Bacteria

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comp(8927..9262)
-----------------
DNA (336bp)
protein (112aa)
Tax=RIFCSPHIGHO2_01_FULL_Saccharibacteria_45_15_curated
PLM1_100_b1_sep16_scaffold_4025_12
Cyanothece sp. CCY0110, Cyanothece, Chroococcales, Oscillatoriophycideae, Cyanobacteria, Bacteria

Not on your lists

9328..9846
-----------------
DNA (519bp)
protein (173aa)
Uncharacterized protein Tax=Cyanothece sp. CCY0110 RepID=A3IX31_9CHRO
Uncharacterized protein {ECO:0000313|EMBL:EAZ88973.1}; species="Bacteria; Cyanobacteria; Oscillatoriophycideae; Chroococcales; Cyanothece.;" source="Cyanothece sp. CCY0110.;"
hypothetical protein
PLM1_100_b1_sep16_scaffold_4025_13
RBG_16_Actinobacteria_68_12_curated, Actinobacteria, Bacteria

Not on your lists

comp(10023..11081)
-----------------
DNA (1059bp)
protein (353aa)
RNA polymerase sigma 70 Tax=Patulibacter americanus RepID=UPI0003B5C1FE
RpoD subfamily RNA polymerase sigma-70 subunit
Tax=RBG_16_Actinobacteria_68_12_curated
PLM1_100_b1_sep16_scaffold_4025_14
Microbispora sp. ATCC PTA-5024, Microbispora, Streptosporangiales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

11151..12068
-----------------
DNA (918bp)
protein (306aa)
hypothetical protein Tax=Saccharopolyspora spinosa RepID=UPI000237A514
Uncharacterized protein {ECO:0000313|EMBL:ETK37536.1}; species="Bacteria; Actinobacteria; Streptosporangiales; Streptosporangiaceae; Microbispora.;" source="Microbispora sp. ATCC PTA-5024.;"
radical SAM domain-containing protein
PLM1_100_b1_sep16_scaffold_4025_15
BJP_08E140C01_Coriobacteriales_62_12, Coriobacteriales, Coriobacteridae, Actinobacteria, Bacteria

Not on your lists

12065..12991
-----------------
DNA (927bp)
protein (309aa)
Uncharacterized protein Tax=Azoarcus sp. KH32C RepID=H0Q097_9RHOO
hypothetical protein
Tax=BJP_08E140C01_Coriobacteriales_62_12
PLM1_100_b1_sep16_scaffold_4025_16
unknown

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13059..13331
-----------------
DNA (273bp)
protein (91aa)

This feature has no annotations

Displaying 16 items

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