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PLM1_100_b1_sep16_scaffold_454

Search features with annotation key words

Displaying items 1-30 of 34 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
PLM1_100_b1_sep16_scaffold_454_1
unknown

Not on your lists

3..548
-----------------
DNA (546bp)
protein (182aa)

This feature has no annotations

PLM1_100_b1_sep16_scaffold_454_2
BJP_IG2158_Thermoplasmatales_53_16, Thermoplasmatales, Thermoplasmata, Euryarchaeota, Archaea

Not on your lists

583..1257
-----------------
DNA (675bp)
protein (225aa)
Glucosamine-1-phosphate N-acetyltransferase Tax=Methanolinea tarda NOBI-1 RepID=G6FI18_9EURY
nucleotidyl transferase
Tax=BJP_IG2158_Thermoplasmatales_53_16
PLM1_100_b1_sep16_scaffold_454_3
RBG_16_Actinobacteria_67_10_curated, Acidimicrobiia, Actinobacteria, Bacteria

Not on your lists

1254..1613
-----------------
DNA (360bp)
protein (120aa)
TPR containing protein Tax=Patulibacter medicamentivorans RepID=H0EA20_9ACTN
hypothetical protein
Tax=RBG_16_Actinobacteria_67_10_curated
PLM1_100_b1_sep16_scaffold_454_4
RBG_19FT_COMBO_Chloroflexi_55_16_curated, Chloroflexi, Bacteria

Not on your lists

1632..2060
-----------------
DNA (429bp)
protein (143aa)
D-tyrosyl-tRNA(Tyr) deacylase; K07560 D-tyrosyl-tRNA(Tyr) deacylase [EC:3.1.-.-] bin=bin3_NC10 species=Symbiobacterium thermophilum genus=Symbiobacterium taxon_order=Clostridiales taxon_class=Clostridia phylum=Firmicutes tax=bin3_NC10 organism_group=NC10
D-tyrosyl-tRNA(Tyr) deacylase
Tax=RBG_19FT_COMBO_Chloroflexi_55_16_curated
PLM1_100_b1_sep16_scaffold_454_5
unknown

Not on your lists

2112..2300
-----------------
DNA (189bp)
protein (63aa)

This feature has no annotations

PLM1_100_b1_sep16_scaffold_454_6
RBG_16_Actinobacteria_68_12_curated, Actinobacteria, Bacteria

Not on your lists

2425..2865
-----------------
DNA (441bp)
protein (147aa)
Ribosome maturation factor RimP Tax=Patulibacter medicamentivorans RepID=H0EA16_9ACTN
hypothetical protein
Tax=RBG_16_Actinobacteria_68_12_curated
PLM1_100_b1_sep16_scaffold_454_7
RBG_16_Actinobacteria_67_10_curated, Acidimicrobiia, Actinobacteria, Bacteria

Not on your lists

2871..4313
-----------------
DNA (1443bp)
protein (481aa)
NusA antitermination factor Tax=Conexibacter woesei (strain DSM 14684 / JCM 11494 / NBRC 100937 / ID131577) RepID=D3FE22_CONWI
NusA antitermination factor
Tax=RBG_16_Actinobacteria_67_10_curated
PLM1_100_b1_sep16_scaffold_454_8
RBG_16_Actinobacteria_67_10_curated, Acidimicrobiia, Actinobacteria, Bacteria

Not on your lists

4505..6484
-----------------
DNA (1980bp)
protein (660aa)
Translation initiation factor IF-2 Tax=Rubrobacter xylanophilus (strain DSM 9941 / NBRC 16129) RepID=IF2_RUBXD
translation initiation factor 2
Tax=RBG_16_Actinobacteria_67_10_curated
PLM1_100_b1_sep16_scaffold_454_9
RBG_16_Actinobacteria_67_10_curated, Acidimicrobiia, Actinobacteria, Bacteria

Not on your lists

6501..6797
-----------------
DNA (297bp)
protein (99aa)
Uncharacterized protein Tax=Conexibacter woesei (strain DSM 14684 / JCM 11494 / NBRC 100937 / ID131577) RepID=D3FE24_CONWI
hypothetical protein
Tax=RBG_16_Actinobacteria_67_10_curated
PLM1_100_b1_sep16_scaffold_454_10
RBG_16_Actinobacteria_68_12_curated, Actinobacteria, Bacteria

Not on your lists

6802..7143
-----------------
DNA (342bp)
protein (114aa)
Ribosome-binding factor A Tax=Conexibacter woesei (strain DSM 14684 / JCM 11494 / NBRC 100937 / ID131577) RepID=D3FE25_CONWI
ribosome-binding factor A
Tax=RBG_16_Actinobacteria_68_12_curated
PLM1_100_b1_sep16_scaffold_454_11
RBG_16_Actinobacteria_68_12_curated, Actinobacteria, Bacteria

Not on your lists

7109..8116
-----------------
DNA (1008bp)
protein (336aa)
Phosphoesterase RecJ domain protein Tax=Conexibacter woesei (strain DSM 14684 / JCM 11494 / NBRC 100937 / ID131577) RepID=D3FE26_CONWI
phosphoesterase RecJ domain-containing protein
Tax=RBG_16_Actinobacteria_68_12_curated
PLM1_100_b1_sep16_scaffold_454_12
RBG_16_Actinobacteria_68_12_curated, Actinobacteria, Bacteria

Not on your lists

8143..8913
-----------------
DNA (771bp)
protein (257aa)
tRNA pseudouridine synthase B (EC:4.2.1.70)
tRNA pseudouridine synthase B Tax=Rubrobacter xylanophilus (strain DSM 9941 / NBRC 16129) RepID=Q1AW51_RUBXD
Tax=RBG_16_Actinobacteria_68_12_curated
PLM1_100_b1_sep16_scaffold_454_13
RBG_16_Actinobacteria_68_12_curated, Actinobacteria, Bacteria

Not on your lists

8910..9779
-----------------
DNA (870bp)
protein (290aa)
riboflavin kinase Tax=Longispora albida RepID=UPI0003709AD3
riboflavin biosynthesis protein ribf
Tax=RBG_16_Actinobacteria_68_12_curated
PLM1_100_b1_sep16_scaffold_454_14
RBG_16_Actinobacteria_67_10_curated, Acidimicrobiia, Actinobacteria, Bacteria

Not on your lists

comp(9969..11234)
-----------------
DNA (1266bp)
protein (422aa)
gamma-glutamyltransferase (EC:2.3.2.2)
Gamma-glutamyltransferase Tax=Stackebrandtia nassauensis (strain DSM 44728 / NRRL B-16338 / NBRC 102104 / LLR-40K-21) RepID=D3Q6I7_STANL
Tax=RBG_16_Actinobacteria_67_10_curated
PLM1_100_b1_sep16_scaffold_454_15
RBG_16_Actinobacteria_67_10_curated, Acidimicrobiia, Actinobacteria, Bacteria

Not on your lists


11469..11738
-----------------
DNA (270bp)
protein (90aa)
30S ribosomal protein S15 Tax=Conexibacter woesei (strain DSM 14684 / JCM 11494 / NBRC 100937 / ID131577) RepID=D3FE30_CONWI
30S ribosomal protein S15
Tax=RBG_16_Actinobacteria_67_10_curated
PLM1_100_b1_sep16_scaffold_454_16

Not on your lists

11855..14350
-----------------
DNA (2496bp)
protein (832aa)
polynucleotide phosphorylase/polyadenylase (EC:2.7.7.8)
Polyribonucleotide nucleotidyltransferase Tax=Moorella thermoacetica (strain ATCC 39073) RepID=PNP_MOOTA
Uncharacterized protein {ECO:0000313|EMBL:KKN11137.1}; species="unclassified sequences; metagenomes; ecological metagenomes.;" source="marine sediment metagenome.;"
PLM1_100_b1_sep16_scaffold_454_17
RBG_16_Chloroflexi_68_14_curated, Chloroflexi, Bacteria

Not on your lists

14376..15545
-----------------
DNA (1170bp)
protein (390aa)
geranylgeranyl reductase bin=RBG2 species=RBG2 genus=RBG2 taxon_order=RBG2 taxon_class=RBG2 phylum=Chloroflexi tax=RBG2 organism_group=Chloroflexi
geranylgeranyl reductase
Tax=RBG_16_Chloroflexi_68_14_curated
PLM1_100_b1_sep16_scaffold_454_18
unknown

Not on your lists

comp(15553..16014)
-----------------
DNA (462bp)
protein (154aa)

This feature has no annotations

PLM1_100_b1_sep16_scaffold_454_19
RBG_16_Actinobacteria_67_10_curated, Acidimicrobiia, Actinobacteria, Bacteria

Not on your lists

16146..17441
-----------------
DNA (1296bp)
protein (432aa)
Peptidase M16 domain protein Tax=Conexibacter woesei (strain DSM 14684 / JCM 11494 / NBRC 100937 / ID131577) RepID=D3FE35_CONWI
peptidase M16 domain-containing protein
Tax=RBG_16_Actinobacteria_67_10_curated
PLM1_100_b1_sep16_scaffold_454_20
R_WOR_1_46_20, WOR-1, Bacteria

Not on your lists

17438..18079
-----------------
DNA (642bp)
protein (214aa)
dihydrodipicolinate reductase Tax=Patulibacter americanus RepID=UPI0003B6811A
dihydrodipicolinate reductase
Tax=RIFCSPLOWO2_02_FULL_WOR_1_46_20_curated
PLM1_100_b1_sep16_scaffold_454_21
RBG_16_Armatimonadetes_67_12_curated, Armatimonadetes, Bacteria

Not on your lists

18076..18516
-----------------
DNA (441bp)
protein (147aa)
hypothetical protein bin=bin9_gal15 species=Ilumatobacter coccineus genus=Ilumatobacter taxon_order=Acidimicrobiales taxon_class=Actinobacteria phylum=Actinobacteria tax=bin9_gal15 organism_group=GAL15
alkylmercury lyase
Tax=RBG_16_Armatimonadetes_67_12_curated
PLM1_100_b1_sep16_scaffold_454_22
RBG_16_RIF_CHLX_70_13_curated, RIF-CHLX, Bacteria

Not on your lists

18523..18741
-----------------
DNA (219bp)
protein (73aa)
Alkylmercury lyase Tax=Cellulomonas flavigena (strain ATCC 482 / DSM 20109 / NCIB 8073 / NRS 134) RepID=D5UHR8_CELFN
alkylmercury lyase
Tax=RBG_16_RIF_CHLX_70_13_curated
PLM1_100_b1_sep16_scaffold_454_23
Carboxydothermus hydrogenoformans, Carboxydothermus, Thermoanaerobacterales, Clostridia, Firmicutes, Bacteria

Not on your lists

18785..19648
-----------------
DNA (864bp)
protein (288aa)
dapA1; dihydrodipicolinate synthase (EC:4.2.1.52)
4-hydroxy-tetrahydrodipicolinate synthase {ECO:0000256|HAMAP-Rule:MF_00418, ECO:0000256|SAAS:SAAS00086421}; Short=HTPA synthase {ECO:0000256|HAMAP-Rule:MF_00418};; EC=4.3.3.7 {ECO:0000256|HAMAP-Rule:MF_00418, ECO:0000256|SAAS:SAAS00086421};; species="Bacteria; Firmicutes; Clostridia; Thermoanaerobacterales; Thermoanaerobacteraceae; Carboxydothermus.;" source="Carboxydothermus hydrogenoformans (strain ATCC BAA-161 / DSM 6008 /; Z-2901).;"
4-hydroxy-tetrahydrodipicolinate synthase Tax=Carboxydothermus hydrogenoformans (strain Z-2901 / DSM 6008) RepID=Q3ACY3_CARHZ
PLM1_100_b1_sep16_scaffold_454_24
Desulfotomaculum acetoxidans, Desulfotomaculum, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

19653..21305
-----------------
DNA (1653bp)
protein (551aa)
Beta-lactamase domain protein Tax=Desulfotomaculum acetoxidans (strain ATCC 49208 / DSM 771 / VKM B-1644) RepID=C8W4L9_DESAS
beta-lactamase domain-containing protein
Beta-lactamase domain protein {ECO:0000313|EMBL:ACV63905.1}; species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptococcaceae; Desulfotomaculum.;" source="Desulfotomaculum acetoxidans (strain ATCC 49208 / DSM 771 / VKM; B-1644).;"
PLM1_100_b1_sep16_scaffold_454_25
unknown

Not on your lists

21743..22378
-----------------
DNA (636bp)
protein (212aa)

This feature has no annotations

PLM1_100_b1_sep16_scaffold_454_26
Conexibacter woesei, Conexibacter, Solirubrobacterales, Thermoleophilia, Actinobacteria, Bacteria

Not on your lists

comp(22375..23427)
-----------------
DNA (1053bp)
protein (351aa)
Uncharacterized protein Tax=Conexibacter woesei (strain DSM 14684 / JCM 11494 / NBRC 100937 / ID131577) RepID=D3F223_CONWI
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ADB50198.1}; species="Bacteria; Actinobacteria; Thermoleophilia; Solirubrobacterales; Conexibacteraceae; Conexibacter.;" source="Conexibacter woesei (strain DSM 14684 / JCM 11494 / NBRC 100937 /; ID131577).;"
PLM1_100_b1_sep16_scaffold_454_27
RBG_16_Actinobacteria_68_12_curated, Actinobacteria, Bacteria

Not on your lists

23476..24027
-----------------
DNA (552bp)
protein (184aa)
Tax=RBG_16_Actinobacteria_68_12_curated
PLM1_100_b1_sep16_scaffold_454_28
Brevundimonas subvibrioides, Brevundimonas, Caulobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

24037..24861
-----------------
DNA (825bp)
protein (275aa)
PfkB domain protein Tax=Brevundimonas subvibrioides (strain ATCC 15264 / DSM 4735 / LMG 14903 / NBRC 16000 / CB 81) RepID=D9QFI9_BRESC
PfkB domain-containing protein
PfkB domain protein {ECO:0000313|EMBL:ADL02504.1}; species="Bacteria; Proteobacteria; Alphaproteobacteria; Caulobacterales; Caulobacteraceae; Brevundimonas.;" source="Brevundimonas subvibrioides (strain ATCC 15264 / DSM 4735 / LMG 14903; / NBRC 16000 / CB 81) (Caulobacter subvibrioides).;"
PLM1_100_b1_sep16_scaffold_454_29
RBG_16_Actinobacteria_68_12_curated, Actinobacteria, Bacteria

Not on your lists

24858..25712
-----------------
DNA (855bp)
protein (285aa)
Inosine-uridine preferring nucleoside hydrolase (EC:3.2.2.1)
Pyrimidine-specific ribonucleoside hydrolase RihA Tax=Edwardsiella tarda RepID=D0ZCD2_EDWTE
Tax=RBG_16_Actinobacteria_68_12_curated
PLM1_100_b1_sep16_scaffold_454_30
unknown

Not on your lists

comp(25687..26727)
-----------------
DNA (1041bp)
protein (347aa)

This feature has no annotations

Displaying items 1-30 of 34 in total

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