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PLM1_100_b1_sep16_scaffold_555

Search features with annotation key words

Displaying items 1-30 of 32 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
PLM1_100_b1_sep16_scaffold_555_1
unknown

Not on your lists

comp(3..131)
-----------------
DNA (129bp)
protein (43aa)

This feature has no annotations

PLM1_100_b1_sep16_scaffold_555_2
RBG_16_Actinobacteria_67_10_curated, Acidimicrobiia, Actinobacteria, Bacteria

Not on your lists

comp(173..541)
-----------------
DNA (369bp)
protein (123aa)
Two component transcriptional regulator, winged helix family Tax=Conexibacter woesei (strain DSM 14684 / JCM 11494 / NBRC 100937 / ID131577) RepID=D3F2E0_CONWI
two component transcriptional regulator
Tax=RBG_16_Actinobacteria_67_10_curated
PLM1_100_b1_sep16_scaffold_555_3
RBG_16_Actinobacteria_64_13_curated, Rubrobacteria, Actinobacteria, Bacteria

Not on your lists

comp(892..2562)
-----------------
DNA (1671bp)
protein (557aa)
2-octaprenylphenol hydroxylase Tax=Rubrobacter xylanophilus (strain DSM 9941 / NBRC 16129) RepID=Q1AWC7_RUBXD
putative unusual protein kinase
Tax=RBG_16_Actinobacteria_64_13_curated
PLM1_100_b1_sep16_scaffold_555_4
RBG_16_Actinobacteria_64_13_curated, Rubrobacteria, Actinobacteria, Bacteria

Not on your lists

comp(2559..2906)
-----------------
DNA (348bp)
protein (116aa)
Putative uncharacterized protein Tax=Desulfotomaculum kuznetsovii (strain DSM 6115 / VKM B-1805 / 17) RepID=F6CI80_DESK7
hypothetical protein
Tax=RBG_16_Actinobacteria_64_13_curated
PLM1_100_b1_sep16_scaffold_555_5
Conexibacter woesei, Conexibacter, Solirubrobacterales, Thermoleophilia, Actinobacteria, Bacteria

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comp(2890..5640)
-----------------
DNA (2751bp)
protein (917aa)
Protein-export membrane protein SecD Tax=Conexibacter woesei (strain DSM 14684 / JCM 11494 / NBRC 100937 / ID131577) RepID=D3FDY6_CONWI
protein-export membrane protein SecD
Protein-export membrane protein SecD {ECO:0000313|EMBL:ADB51602.1}; Flags: Precursor;; species="Bacteria; Actinobacteria; Thermoleophilia; Solirubrobacterales; Conexibacteraceae; Conexibacter.;" source="Conexibacter woesei (strain DSM 14684 / JCM 11494 / NBRC 100937 /; ID131577).;"
PLM1_100_b1_sep16_scaffold_555_6
RBG_16_Actinobacteria_67_10_curated, Acidimicrobiia, Actinobacteria, Bacteria

Not on your lists

comp(5647..6000)
-----------------
DNA (354bp)
protein (118aa)
Preprotein translocase, YajC subunit Tax=Desulfotomaculum acetoxidans (strain ATCC 49208 / DSM 771 / VKM B-1644) RepID=C8W4D9_DESAS
preprotein translocase subunit YajC
Tax=RBG_16_Actinobacteria_67_10_curated
PLM1_100_b1_sep16_scaffold_555_7
Rubrobacter xylanophilus, Rubrobacter, Rubrobacterales, Rubrobacteria, Actinobacteria, Bacteria

Not on your lists

comp(5993..7117)
-----------------
DNA (1125bp)
protein (375aa)
queuine tRNA-ribosyltransferase (EC:2.4.2.29)
Queuine tRNA-ribosyltransferase {ECO:0000256|HAMAP-Rule:MF_00168, ECO:0000256|RuleBase:RU003777}; EC=2.4.2.29 {ECO:0000256|HAMAP-Rule:MF_00168, ECO:0000256|RuleBase:RU003777};; Guanine insertion enzyme {ECO:0000256|HAMAP-Rule:MF_00168}; tRNA-guanine transglycosylase {ECO:0000256|HAMAP-Rule:MF_00168}; species="Bacteria; Actinobacteria; Rubrobacteria; Rubrobacterales; Rubrobacterineae; Rubrobacteraceae; Rubrobacter.;" source="Rubrobacter xylanophilus (strain DSM 9941 / NBRC 16129).;"
Queuine tRNA-ribosyltransferase Tax=Rubrobacter xylanophilus (strain DSM 9941 / NBRC 16129) RepID=Q1AWD4_RUBXD
PLM1_100_b1_sep16_scaffold_555_8
RBG_16_Actinobacteria_67_10_curated, Acidimicrobiia, Actinobacteria, Bacteria

Not on your lists

comp(7126..8067)
-----------------
DNA (942bp)
protein (314aa)
S-adenosylmethionine:tRNA ribosyltransferase-isomerase Tax=Rubrobacter xylanophilus (strain DSM 9941 / NBRC 16129) RepID=QUEA_RUBXD
queuosine biosynthesis protein
Tax=RBG_16_Actinobacteria_67_10_curated
PLM1_100_b1_sep16_scaffold_555_9
unknown

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8095..8559
-----------------
DNA (465bp)
protein (155aa)

This feature has no annotations

PLM1_100_b1_sep16_scaffold_555_10
unknown

Not on your lists

comp(8623..8841)
-----------------
DNA (219bp)
protein (73aa)

This feature has no annotations

PLM1_100_b1_sep16_scaffold_555_11
Symbiobacterium thermophilum, Symbiobacterium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(8903..10282)
-----------------
DNA (1380bp)
protein (460aa)
Histidine kinase {ECO:0000256|SAAS:SAAS00251121}; EC=2.7.13.3 {ECO:0000256|SAAS:SAAS00251121};; species="Bacteria; Firmicutes; Clostridia; Clostridiales; Symbiobacteriaceae; Symbiobacterium.;" source="Symbiobacterium thermophilum (strain T / IAM 14863).;"
Two-component sensor histidine kinase Tax=Symbiobacterium thermophilum (strain T / IAM 14863) RepID=Q67J80_SYMTH
two-component sensor histidine kinase
PLM1_100_b1_sep16_scaffold_555_12
RBG_16_Actinobacteria_68_12_curated, Actinobacteria, Bacteria

Not on your lists

comp(10298..11008)
-----------------
DNA (711bp)
protein (237aa)
OmpR family two-component response regulator; K07658 two-component system, OmpR family, alkaline phosphatase synthesis response regulator PhoP bin=RBG9 species=RBG9 genus=RBG9 taxon_order=RBG9 taxon_class=RBG9 phylum=Chloroflexi tax=RBG9 organism_group=Chloroflexi
putative OmpR family two-component response regulator
Tax=RBG_16_Actinobacteria_68_12_curated
PLM1_100_b1_sep16_scaffold_555_13
unknown

Not on your lists

comp(11019..11486)
-----------------
DNA (468bp)
protein (156aa)

This feature has no annotations

PLM1_100_b1_sep16_scaffold_555_14
unknown

Not on your lists

11642..11899
-----------------
DNA (258bp)
protein (86aa)

This feature has no annotations

PLM1_100_b1_sep16_scaffold_555_15
unknown

Not on your lists

comp(11903..12103)
-----------------
DNA (201bp)
protein (67aa)

This feature has no annotations

PLM1_100_b1_sep16_scaffold_555_16
RBG_16_Actinobacteria_68_12_curated, Actinobacteria, Bacteria

Not on your lists

comp(12151..12990)
-----------------
DNA (840bp)
protein (280aa)
FadB; 3-hydroxybutyryl-CoA dehydrogenase (EC:1.1.1.157)
3-Hydroxyacyl-CoA dehydrogenase Tax=Thermoanaerobacter tengcongensis (strain DSM 15242 / JCM 11007 / NBRC 100824 / MB4) RepID=Q8R5U1_THETN
Tax=RBG_16_Actinobacteria_68_12_curated
PLM1_100_b1_sep16_scaffold_555_17
RBG_16_Actinobacteria_67_10_curated, Acidimicrobiia, Actinobacteria, Bacteria

Not on your lists

13041..14471
-----------------
DNA (1431bp)
protein (477aa)
Aldehyde Dehydrogenase Tax=Thermomonospora curvata (strain ATCC 19995 / DSM 43183 / JCM 3096 / NCIMB 10081) RepID=D1A1K7_THECD
aldehyde dehydrogenase
Tax=RBG_16_Actinobacteria_67_10_curated
PLM1_100_b1_sep16_scaffold_555_18
RBG_16_Actinobacteria_67_10_curated, Acidimicrobiia, Actinobacteria, Bacteria

Not on your lists

14513..15118
-----------------
DNA (606bp)
protein (202aa)
Double zinc ribbon family protein Tax=Clostridium bifermentans ATCC 19299 RepID=T4W1M1_CLOBI
Tax=RBG_16_Actinobacteria_67_10_curated
PLM1_100_b1_sep16_scaffold_555_19
Salpingoeca rosetta, Salpingoeca, Choanoflagellida, Eukaryota

Not on your lists

15288..16052
-----------------
DNA (765bp)
protein (255aa)
Putative uncharacterized protein Tax=Salpingoeca rosetta (strain ATCC 50818 / BSB-021) RepID=F2TXX7_SALR5
molecular chaperone
Putative uncharacterized protein {ECO:0000313|EMBL:EGD76236.1}; species="Eukaryota; Choanoflagellida; Salpingoecidae; Salpingoeca.;" source="Salpingoeca rosetta (strain ATCC 50818 / BSB-021).;"
PLM1_100_b1_sep16_scaffold_555_20
RBG_16_Actinobacteria_67_10_curated, Acidimicrobiia, Actinobacteria, Bacteria

Not on your lists

16200..16649
-----------------
DNA (450bp)
protein (150aa)
Uncharacterized protein Tax=Conexibacter woesei (strain DSM 14684 / JCM 11494 / NBRC 100937 / ID131577) RepID=D3F2A9_CONWI
hypothetical protein
Tax=RBG_16_Actinobacteria_67_10_curated
PLM1_100_b1_sep16_scaffold_555_21
RBG_16_Actinobacteria_68_12_curated, Actinobacteria, Bacteria

Not on your lists

comp(16690..17748)
-----------------
DNA (1059bp)
protein (353aa)
DNA-directed DNA polymerase (EC:2.7.7.7)
DNA polymerase IV Tax=Sphaerobacter thermophilus (strain DSM 20745 / S 6022) RepID=D1C5S0_SPHTD
Tax=RBG_16_Actinobacteria_68_12_curated
PLM1_100_b1_sep16_scaffold_555_22
RBG_16_Actinobacteria_68_12_curated, Actinobacteria, Bacteria

Not on your lists

17783..20266
-----------------
DNA (2484bp)
protein (828aa)
Transcriptional regulator protein-like protein Tax=Conexibacter woesei (strain DSM 14684 / JCM 11494 / NBRC 100937 / ID131577) RepID=D3F2Q5_CONWI
transcriptional regulator
Tax=RBG_16_Actinobacteria_68_12_curated
PLM1_100_b1_sep16_scaffold_555_23

Not on your lists

comp(20170..20640)
-----------------
DNA (471bp)
protein (157aa)
Iron-sulfur cluster binding protein Tax=uncultured bacterium W5-102b RepID=H9BWK0_9BACT
Iron-sulfur cluster binding protein {ECO:0000313|EMBL:AFD03172.1}; species="Bacteria; environmental samples.;" source="uncultured bacterium W5-102b.;"
hypothetical protein
PLM1_100_b1_sep16_scaffold_555_24
RBG_16_Actinobacteria_68_12_curated, Actinobacteria, Bacteria

Not on your lists

20834..21793
-----------------
DNA (960bp)
protein (320aa)
Alcohol dehydrogenase zinc-binding domain protein bin=GWA2_Deltaproteo_65_63 species=uncultured candidate division OP1 bacterium genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWA2_Deltaproteo_65_63 organism_group=Deltaproteobacteria
alcohol dehydrogenase
Tax=RBG_16_Actinobacteria_68_12_curated
PLM1_100_b1_sep16_scaffold_555_25
RBG_16_Actinobacteria_68_12_curated, Actinobacteria, Bacteria

Not on your lists

comp(21790..22089)
-----------------
DNA (300bp)
protein (100aa)
PaaD-like protein (DUF59) involved in Fe-S cluster assembly Tax=Patulibacter medicamentivorans RepID=H0E9W9_9ACTN
hypothetical protein
Tax=RBG_16_Actinobacteria_68_12_curated
PLM1_100_b1_sep16_scaffold_555_26
Thermosinus carboxydivorans, Thermosinus, Selenomonadales, Negativicutes, Firmicutes, Bacteria

Not on your lists

comp(22099..23076)
-----------------
DNA (978bp)
protein (326aa)
fructose-1,6-bisphosphatase (EC:3.1.3.11)
Fructose-1,6-bisphosphatase Tax=Thermosinus carboxydivorans Nor1 RepID=A1HRW8_9FIRM
Fructose-1,6-bisphosphatase {ECO:0000256|PIRNR:PIRNR004532}; species="Bacteria; Firmicutes; Negativicutes; Selenomonadales; Veillonellaceae; Thermosinus.;" source="Thermosinus carboxydivorans Nor1.;"
PLM1_100_b1_sep16_scaffold_555_27
RBG_16_Actinobacteria_68_12_curated, Actinobacteria, Bacteria

Not on your lists

comp(23073..23753)
-----------------
DNA (681bp)
protein (227aa)
2-phosphoglycerate kinase Tax=Deinococcus geothermalis (strain DSM 11300) RepID=Q1IXH4_DEIGD
2-phosphoglycerate kinase
Tax=RBG_16_Actinobacteria_68_12_curated
PLM1_100_b1_sep16_scaffold_555_28
Streptomyces rimosus, Streptomyces, Streptomycetales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(23750..25021)
-----------------
DNA (1272bp)
protein (424aa)
Cyclic 2,3-diphosphoglycerate synthetase Tax=Streptomyces rimosus subsp. rimosus ATCC 10970 RepID=L8EXG7_STRRM
Cyclic 2,3-diphosphoglycerate synthetase {ECO:0000313|EMBL:ELQ84238.1}; species="Bacteria; Actinobacteria; Streptomycetales; Streptomycetaceae; Streptomyces.;" source="Streptomyces rimosus subsp. rimosus ATCC 10970.;"
cyclic 2,3-diphosphoglycerate-synthetase
PLM1_100_b1_sep16_scaffold_555_29
RBG_16_Actinobacteria_64_13_curated, Rubrobacteria, Actinobacteria, Bacteria

Not on your lists

comp(25018..25806)
-----------------
DNA (789bp)
protein (263aa)
Metallophosphoesterase Tax=Rubrobacter xylanophilus (strain DSM 9941 / NBRC 16129) RepID=Q1AVF9_RUBXD
metallophosphoesterase
Tax=RBG_16_Actinobacteria_64_13_curated
PLM1_100_b1_sep16_scaffold_555_30

Not on your lists

25901..26266
-----------------
DNA (366bp)
protein (122aa)
Hypoxanthine phosphoribosyltransferase Tax=uncultured bacterium W5-102b RepID=H9BWL1_9BACT
Hypoxanthine phosphoribosyltransferase {ECO:0000313|EMBL:AFD03183.1}; species="Bacteria; environmental samples.;" source="uncultured bacterium W5-102b.;"
hypothetical protein
Displaying items 1-30 of 32 in total

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