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PLM1_100_b1_sep16_scaffold_997

Search features with annotation key words

Displaying 21 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
PLM1_100_b1_sep16_scaffold_997_1
RBG_16_Actinobacteria_68_12_curated, Actinobacteria, Bacteria

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95..1600
-----------------
DNA (1506bp)
protein (502aa)
multi-sensor signal transduction histidine kinase (EC:2.7.3.-)
putative PAS/PAC sensor protein Tax=Gemmata obscuriglobus RepID=UPI00016C469F
Tax=RBG_16_Actinobacteria_68_12_curated
PLM1_100_b1_sep16_scaffold_997_trna_3
unknown

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comp(1610..1680)
-----------------
DNA (71bp)
transferRNA Cys
PLM1_100_b1_sep16_scaffold_997_2
Streptomyces sp. AA4, Streptomyces, Streptomycetales, Actinobacteria, Actinobacteria, Bacteria

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comp(1835..2326)
-----------------
DNA (492bp)
protein (164aa)
hypothetical protein, partial Tax=Saccharomonospora saliphila RepID=UPI000361635B
phosphoglycerate mutase
Bifunctional RNase H/acid phosphatase {ECO:0000313|EMBL:EFL05158.1}; species="Bacteria; Actinobacteria; Streptomycetales; Streptomycetaceae; Streptomyces.;" source="Streptomyces sp. AA4.;"
PLM1_100_b1_sep16_scaffold_997_3
Candidatus Entotheonella sp. TSY1, Candidatus Entotheonella, Deltaproteobacteria, Proteobacteria, Bacteria

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comp(2331..2750)
-----------------
DNA (420bp)
protein (140aa)
Bleomycin resistance protein Tax=sulfur-oxidizing symbionts RepID=G2DCM1_9GAMM
Uncharacterized protein {ECO:0000313|EMBL:ETW97702.1}; Flags: Fragment;; species="Bacteria; Proteobacteria; Deltaproteobacteria; Candidatus Entotheonella.;" source="Candidatus Entotheonella sp. TSY1.;"
glyoxalase/bleomycin resistance protein/dioxygenase
PLM1_100_b1_sep16_scaffold_997_4
unknown

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comp(2747..2890)
-----------------
DNA (144bp)
protein (48aa)

This feature has no annotations

PLM1_100_b1_sep16_scaffold_997_5
unknown

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3372..3797
-----------------
DNA (426bp)
protein (142aa)

This feature has no annotations

PLM1_100_b1_sep16_scaffold_997_trna_2
unknown

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comp(3904..3977)
-----------------
DNA (74bp)
transferRNA Gly
PLM1_100_b1_sep16_scaffold_997_6
RBG_16_RIF_WS3X_71_46_curated, RIF-WS3X, Bacteria

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comp(3988..4398)
-----------------
DNA (411bp)
protein (137aa)
Putative SAM-dependent methyltransferase Tax=Thermaerobacter subterraneus DSM 13965 RepID=K6PQ68_9FIRM bin=16ft_combo_ws3_JS1 species=Thermaerobacter subterraneus genus=Thermaerobacter taxon_order=Clostridiales taxon_class=Clostridia phylum=Firmicutes tax=16ft_combo_ws3_JS1 organism_group=Unknown_CP organism_desc=Cant place firmly withiin either WS3 or JS1. Part of a large Rifle clade
ribonuclease H
Tax=RBG_16_RIF_WS3X_71_46_curated
PLM1_100_b1_sep16_scaffold_997_7

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comp(4395..4703)
-----------------
DNA (309bp)
protein (103aa)
Putative GTP cyclohydrolase 1 type 2 Tax=Sorangium cellulosum So0157-2 RepID=S4XZH9_SORCE
Marine sediment metagenome DNA, contig: S01H1_S26233 {ECO:0000313|EMBL:GAG41152.1}; Flags: Fragment;; species="unclassified sequences; metagenomes; ecological metagenomes.;" source="marine sediment metagenome.;"
hypothetical protein
PLM1_100_b1_sep16_scaffold_997_8
RBG_13_Actinobacteria_55_18_curated, Actinobacteria, Bacteria

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comp(4709..5434)
-----------------
DNA (726bp)
protein (242aa)
Uncharacterized protein Tax=uncultured bacterium RepID=K2BWV5_9BACT
oxidoreductase, 2Fe-2S and FAD/NAD(P) binding domain-containing protein
Tax=RBG_13_Actinobacteria_55_18_curated
PLM1_100_b1_sep16_scaffold_997_9
Nitrosococcus halophilus, Nitrosococcus, Chromatiales, Gammaproteobacteria, Proteobacteria, Bacteria

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5451..6725
-----------------
DNA (1275bp)
protein (425aa)
Protease HtpX {ECO:0000256|HAMAP-Rule:MF_00188}; EC=3.4.24.- {ECO:0000256|HAMAP-Rule:MF_00188};; Heat shock protein HtpX {ECO:0000256|HAMAP-Rule:MF_00188}; Flags: Precursor;; species="Bacteria; Proteobacteria; Gammaproteobacteria; Chromatiales; Chromatiaceae; Nitrosococcus.;" source="Nitrosococcus halophilus (strain Nc4).;"
Protease HtpX Tax=Nitrosococcus halophilus (strain Nc4) RepID=D5BUM8_NITHN
peptidase M48 Ste24p
PLM1_100_b1_sep16_scaffold_997_10
Nitrolancea hollandica, Nitrolancea, Sphaerobacterales, Sphaerobacteridae, Chloroflexi, Bacteria

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comp(6911..8410)
-----------------
DNA (1500bp)
protein (500aa)
Putative Aldehyde dehydrogenase (NAD(+)) {ECO:0000313|EMBL:CCF82411.1}; EC=1.2.1.3 {ECO:0000313|EMBL:CCF82411.1};; species="Bacteria; Chloroflexi; Sphaerobacteridae; Sphaerobacterales; Sphaerobacterineae; Sphaerobacteraceae; Nitrolancea.;" source="Nitrolancea hollandica Lb.;"
Putative Aldehyde dehydrogenase (NAD(+)) Tax=Nitrolancetus hollandicus Lb RepID=I4ECJ9_9CHLR
aldehyde Dehydrogenase
PLM1_100_b1_sep16_scaffold_997_11
Tetrasphaera australiensis, Tetrasphaera, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

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8455..8889
-----------------
DNA (435bp)
protein (145aa)
Uncharacterized protein Tax=Micromonospora lupini str. Lupac 08 RepID=I0LAQ5_9ACTO
Uncharacterized protein {ECO:0000313|EMBL:CCH74174.1}; species="Bacteria; Actinobacteria; Micrococcales; Intrasporangiaceae; Tetrasphaera.;" source="Tetrasphaera australiensis Ben110.;"
PLM1_100_b1_sep16_scaffold_997_12
unknown

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comp(8947..9180)
-----------------
DNA (234bp)
protein (78aa)

This feature has no annotations

PLM1_100_b1_sep16_scaffold_997_13
RBG_16_Actinobacteria_68_12_curated, Actinobacteria, Bacteria

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comp(9218..9835)
-----------------
DNA (618bp)
protein (206aa)
Tax=RBG_16_Actinobacteria_68_12_curated
PLM1_100_b1_sep16_scaffold_997_14
Conexibacter woesei, Conexibacter, Solirubrobacterales, Thermoleophilia, Actinobacteria, Bacteria

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comp(9835..11889)
-----------------
DNA (2055bp)
protein (685aa)
Translation elongation factor G Tax=Conexibacter woesei (strain DSM 14684 / JCM 11494 / NBRC 100937 / ID131577) RepID=D3F1B7_CONWI
translation elongation factor G
Translation elongation factor G {ECO:0000313|EMBL:ADB52080.1}; species="Bacteria; Actinobacteria; Thermoleophilia; Solirubrobacterales; Conexibacteraceae; Conexibacter.;" source="Conexibacter woesei (strain DSM 14684 / JCM 11494 / NBRC 100937 /; ID131577).;"
PLM1_100_b1_sep16_scaffold_997_15
Conexibacter woesei, Conexibacter, Solirubrobacterales, Thermoleophilia, Actinobacteria, Bacteria

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comp(11929..12717)
-----------------
DNA (789bp)
protein (263aa)
RNA polymerase sigma factor Tax=Conexibacter woesei (strain DSM 14684 / JCM 11494 / NBRC 100937 / ID131577) RepID=D3F1B8_CONWI
RNA polymerase sigma 28 subunit FliA/WhiG
RNA polymerase sigma factor {ECO:0000256|RuleBase:RU000715}; species="Bacteria; Actinobacteria; Thermoleophilia; Solirubrobacterales; Conexibacteraceae; Conexibacter.;" source="Conexibacter woesei (strain DSM 14684 / JCM 11494 / NBRC 100937 /; ID131577).;"
PLM1_100_b1_sep16_scaffold_997_trna_1
unknown

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12928..13000
-----------------
DNA (73bp)
transferRNA Trp
PLM1_100_b1_sep16_scaffold_997_16

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13065..13505
-----------------
DNA (441bp)
protein (147aa)
Uncharacterized protein (Fragment) Tax=mine drainage metagenome RepID=T1BHK6_9ZZZZ
Uncharacterized protein {ECO:0000313|EMBL:EQD53610.1}; Flags: Fragment;; species="unclassified sequences; metagenomes; ecological metagenomes.;" source="mine drainage metagenome.;"
hypothetical protein
PLM1_100_b1_sep16_scaffold_997_17
Rubrobacter xylanophilus, Rubrobacter, Rubrobacterales, Rubrobacteria, Actinobacteria, Bacteria

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comp(13552..13923)
-----------------
DNA (372bp)
protein (124aa)
Putative uncharacterized protein Tax=Rubrobacter xylanophilus (strain DSM 9941 / NBRC 16129) RepID=Q1AVM2_RUBXD
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ABG04556.1}; species="Bacteria; Actinobacteria; Rubrobacteria; Rubrobacterales; Rubrobacterineae; Rubrobacteraceae; Rubrobacter.;" source="Rubrobacter xylanophilus (strain DSM 9941 / NBRC 16129).;"
PLM1_100_b1_sep16_scaffold_997_18
RBG_16_Deltaproteobacteria_49_23_curated, Deltaproteobacteria, Proteobacteria, Bacteria

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comp(13929..14357)
-----------------
DNA (429bp)
protein (143aa)
Uncharacterized protein bin=GWB2_Deltaproteobacteria_65_81 species=planctomycete KSU-1 genus=unknown taxon_order=Planctomycetales taxon_class=Planctomycetia phylum=Planctomycetes tax=GWB2_Deltaproteobacteria_65_81 organism_group=Deltaproteobacteria organism_desc=Good +
Tax=RBG_16_Deltaproteobacteria_49_23_curated
Displaying 21 items

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