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PLM1_100_b1_sep16_scaffold_2000

Search features with annotation key words

Displaying 17 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
PLM1_100_b1_sep16_scaffold_2000_1
unknown

Not on your lists

comp(3..242)
-----------------
DNA (240bp)
protein (80aa)

This feature has no annotations

PLM1_100_b1_sep16_scaffold_2000_2
RBG_16_Actinobacteria_67_10_curated, Acidimicrobiia, Actinobacteria, Bacteria

Not on your lists

541..1902
-----------------
DNA (1362bp)
protein (454aa)
Uncharacterized protein Tax=Conexibacter woesei (strain DSM 14684 / JCM 11494 / NBRC 100937 / ID131577) RepID=D3FEX1_CONWI
hypothetical protein
Tax=RBG_16_Actinobacteria_67_10_curated
PLM1_100_b1_sep16_scaffold_2000_3
RBG_16_Actinobacteria_67_10_curated, Acidimicrobiia, Actinobacteria, Bacteria

Not on your lists

2048..2803
-----------------
DNA (756bp)
protein (252aa)
glutamine amidotransferase, cobB/cobQ-like protein (EC:6.3.5.2) bin=bin9_gal15 species=Thermacetogenium phaeum genus=Thermacetogenium taxon_order=Thermoanaerobacterales taxon_class=Clostridia phylum=Firmicutes tax=bin9_gal15 organism_group=GAL15
CobB/CobQ-like glutamine amidotransferase
Tax=RBG_16_Actinobacteria_67_10_curated
PLM1_100_b1_sep16_scaffold_2000_4
unknown

Not on your lists

2932..4857
-----------------
DNA (1926bp)
protein (642aa)

This feature has no annotations

PLM1_100_b1_sep16_scaffold_2000_5
RBG_16_Actinobacteria_67_10_curated, Acidimicrobiia, Actinobacteria, Bacteria

Not on your lists

comp(4864..5313)
-----------------
DNA (450bp)
protein (150aa)
NUDIX hydrolase Tax=Ilyobacter polytropus (strain DSM 2926 / CuHBu1) RepID=E3H6V2_ILYPC
NUDIX hydrolase
Tax=RBG_16_Actinobacteria_67_10_curated
PLM1_100_b1_sep16_scaffold_2000_6
RBG_16_Actinobacteria_67_10_curated, Acidimicrobiia, Actinobacteria, Bacteria

Not on your lists

comp(5313..5753)
-----------------
DNA (441bp)
protein (147aa)
deoxyuridine 5'-triphosphate nucleotidohydrolase Dut (EC:3.6.1.23)
deoxyuridine 5''''-triphosphate nucleotidohydrolase Tax=Patulibacter americanus RepID=UPI0003B379B3
Tax=RBG_16_Actinobacteria_67_10_curated
PLM1_100_b1_sep16_scaffold_2000_7
RBG_16_Actinobacteria_67_10_curated, Acidimicrobiia, Actinobacteria, Bacteria

Not on your lists

comp(5750..7138)
-----------------
DNA (1389bp)
protein (463aa)
GTPase HflX Tax=Conexibacter woesei (strain DSM 14684 / JCM 11494 / NBRC 100937 / ID131577) RepID=D3FE61_CONWI
GTP-binding proten HflX
Tax=RBG_16_Actinobacteria_67_10_curated
PLM1_100_b1_sep16_scaffold_2000_8
RBG_16_Actinobacteria_64_13_curated, Rubrobacteria, Actinobacteria, Bacteria

Not on your lists

comp(7138..8322)
-----------------
DNA (1185bp)
protein (395aa)
diaminopimelate aminotransferase Tax=Desulfurispora thermophila RepID=UPI00037969F4
class I and II aminotransferase
Tax=RBG_16_Actinobacteria_64_13_curated
PLM1_100_b1_sep16_scaffold_2000_9
R_NC10_66_22, NC10, Bacteria

Not on your lists

comp(8319..9110)
-----------------
DNA (792bp)
protein (264aa)
dapF; diaminopimelate epimerase (EC:5.1.1.7); K01778 diaminopimelate epimerase [EC:5.1.1.7] bin=bin7_NC10_sister species=Dictyoglomus thermophilum genus=Dictyoglomus taxon_order=Dictyoglomales taxon_class=Dictyoglomia phylum=Dictyoglomi tax=bin7_NC10_sister organism_group=NC10
dapF1; Diaminopimelate epimerase 1 (EC:5.1.1.7)
Tax=RIFCSPLOWO2_02_FULL_NC10_66_22_curated
PLM1_100_b1_sep16_scaffold_2000_10
Conexibacter woesei, Conexibacter, Solirubrobacterales, Thermoleophilia, Actinobacteria, Bacteria

Not on your lists

comp(9052..9975)
-----------------
DNA (924bp)
protein (308aa)
tRNA delta(2)-isopentenylpyrophosphate transferase (EC:2.5.1.75)
tRNA dimethylallyltransferase {ECO:0000256|HAMAP-Rule:MF_00185}; EC=2.5.1.75 {ECO:0000256|HAMAP-Rule:MF_00185};; Dimethylallyl diphosphate:tRNA dimethylallyltransferase {ECO:0000256|HAMAP-Rule:MF_00185}; Isopentenyl-diphosphate:tRNA isopentenyltransferase {ECO:0000256|HAMAP-Rule:MF_00185}; species="Bacteria; Actinobacteria; Thermoleophilia; Solirubrobacterales; Conexibacteraceae; Conexibacter.;" source="Conexibacter woesei (strain DSM 14684 / JCM 11494 / NBRC 100937 /; ID131577).;"
tRNA dimethylallyltransferase Tax=Conexibacter woesei (strain DSM 14684 / JCM 11494 / NBRC 100937 / ID131577) RepID=D3FE57_CONWI
PLM1_100_b1_sep16_scaffold_2000_11
Conexibacter woesei, Conexibacter, Solirubrobacterales, Thermoleophilia, Actinobacteria, Bacteria

Not on your lists

comp(10067..11398)
-----------------
DNA (1332bp)
protein (444aa)
tRNA-2-methylthio-N(6)-dimethylallyladenosine synthase {ECO:0000256|HAMAP-Rule:MF_01864}; EC=2.8.4.3 {ECO:0000256|HAMAP-Rule:MF_01864};; (Dimethylallyl)adenosine tRNA methylthiotransferase MiaB {ECO:0000256|HAMAP-Rule:MF_01864}; tRNA-i(6)A37 methylthiotransferase {ECO:0000256|HAMAP-Rule:MF_01864}; species="Bacteria; Actinobacteria; Thermoleophilia; Solirubrobacterales; Conexibacteraceae; Conexibacter.;" source="Conexibacter woesei (strain DSM 14684 / JCM 11494 / NBRC 100937 /; ID131577).;"
(Dimethylallyl)adenosine tRNA methylthiotransferase MiaB Tax=Conexibacter woesei (strain DSM 14684 / JCM 11494 / NBRC 100937 / ID131577) RepID=D3FE51_CONWI
MiaB family RNA modification protein
PLM1_100_b1_sep16_scaffold_2000_12
RBG_16_Actinobacteria_67_10_curated, Acidimicrobiia, Actinobacteria, Bacteria

Not on your lists

comp(11395..12927)
-----------------
DNA (1533bp)
protein (511aa)
Ribonuclease Y Tax=Carboxydothermus hydrogenoformans (strain Z-2901 / DSM 6008) RepID=RNY_CARHZ
HDIG/KH domain-containing protein
Tax=RBG_16_Actinobacteria_67_10_curated
PLM1_100_b1_sep16_scaffold_2000_13
RBG_16_Actinobacteria_67_10_curated, Acidimicrobiia, Actinobacteria, Bacteria

Not on your lists

comp(13153..13617)
-----------------
DNA (465bp)
protein (155aa)
Regulatory protein RecX Tax=Myxococcus stipitatus (strain DSM 14675 / JCM 12634 / Mx s8) RepID=L7U7Q1_MYXSD
regulatory protein RecX
Tax=RBG_16_Actinobacteria_67_10_curated
PLM1_100_b1_sep16_scaffold_2000_14
RBG_16_Actinobacteria_68_12_curated, Actinobacteria, Bacteria

Not on your lists


comp(13680..14705)
-----------------
DNA (1026bp)
protein (342aa)
Protein RecA Tax=Patulibacter medicamentivorans RepID=H0E2U6_9ACTN
recA protein
Tax=RBG_16_Actinobacteria_68_12_curated
PLM1_100_b1_sep16_scaffold_2000_15
RBG_16_Actinobacteria_68_12_curated, Actinobacteria, Bacteria

Not on your lists

comp(14702..15271)
-----------------
DNA (570bp)
protein (190aa)
2'-5' RNA ligase Tax=Patulibacter medicamentivorans RepID=H0E734_9ACTN
2'-5' RNA ligase
Tax=RBG_16_Actinobacteria_68_12_curated
PLM1_100_b1_sep16_scaffold_2000_16
RBG_16_Actinobacteria_68_12_curated, Actinobacteria, Bacteria

Not on your lists

comp(15268..16449)
-----------------
DNA (1182bp)
protein (394aa)
CinA-like protein Tax=Blastococcus saxobsidens (strain DD2) RepID=H6RJH0_BLASD
competence/damage-inducible molybdopterin binding CinA-like protein
Tax=RBG_16_Actinobacteria_68_12_curated
PLM1_100_b1_sep16_scaffold_2000_17
RBG_16_Actinobacteria_68_12_curated, Actinobacteria, Bacteria

Not on your lists

comp(16533..17141)
-----------------
DNA (609bp)
protein (203aa)
Tax=RBG_16_Actinobacteria_68_12_curated
Displaying 17 items

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