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PLM1_100_b1_sep16_scaffold_2013

Search features with annotation key words

Displaying 21 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
PLM1_100_b1_sep16_scaffold_2013_1
Cystobacter violaceus, Cystobacter, Myxococcales, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

2..910
-----------------
DNA (909bp)
protein (303aa)
Chloromuconate cycloisomerase YkfB1 Tax=Stigmatella aurantiaca (strain DW4/3-1) RepID=Q08YV3_STIAD
L-alanine-DL-glutamate epimerase {ECO:0000313|EMBL:KFA86859.1}; species="Bacteria; Proteobacteria; Deltaproteobacteria; Myxococcales; Cystobacterineae; Cystobacteraceae; Cystobacter.;" source="Cystobacter violaceus Cb vi76.;"
mandelate racemase/muconate lactonizing enzyme
PLM1_100_b1_sep16_scaffold_2013_2
Blastococcus saxobsidens, Blastococcus, Geodermatophilales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

1019..2059
-----------------
DNA (1041bp)
protein (347aa)
Uncharacterized protein Tax=Blastococcus saxobsidens (strain DD2) RepID=H6RM19_BLASD
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:CCG01261.1}; species="Bacteria; Actinobacteria; Geodermatophilales; Geodermatophilaceae; Blastococcus.;" source="Blastococcus saxobsidens (strain DD2).;"
PLM1_100_b1_sep16_scaffold_2013_3
RBG_19FT_COMBO_Armatimonadetes_69_19_curated, Armatimonadetes, Bacteria

Not on your lists

2056..3198
-----------------
DNA (1143bp)
protein (381aa)
Peptidase M29, aminopeptidase II Tax=Roseiflexus sp. (strain RS-1) RepID=A5UWL5_ROSS1
peptidase M29, aminopeptidase II
Tax=RBG_19FT_COMBO_Armatimonadetes_69_19_curated
PLM1_100_b1_sep16_scaffold_2013_4
Thermomicrobium roseum, Thermomicrobium, Thermomicrobiales, Thermomicrobia, Chloroflexi, Bacteria

Not on your lists

3191..4303
-----------------
DNA (1113bp)
protein (371aa)
Peptidase M29 aminopeptidase II Tax=Thermomicrobium roseum (strain ATCC 27502 / DSM 5159 / P-2) RepID=B9L499_THERP
peptidase M29 aminopeptidase II
Peptidase M29 aminopeptidase II {ECO:0000313|EMBL:ACM06820.1}; species="Bacteria; Chloroflexi; Thermomicrobiales; Thermomicrobiaceae; Thermomicrobium.;" source="Thermomicrobium roseum (strain ATCC 27502 / DSM 5159 / P-2).;"
PLM1_100_b1_sep16_scaffold_2013_5
unknown

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comp(4267..4581)
-----------------
DNA (315bp)
protein (105aa)

This feature has no annotations

PLM1_100_b1_sep16_scaffold_2013_6
RBG_16_Actinobacteria_68_12_curated, Actinobacteria, Bacteria

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4804..5052
-----------------
DNA (249bp)
protein (83aa)
Tax=RBG_16_Actinobacteria_68_12_curated
PLM1_100_b1_sep16_scaffold_2013_7
BJP_IG2102_Clostridiales_34_350, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(5072..6385)
-----------------
DNA (1314bp)
protein (438aa)
PAS/PAC sensor-containing diguanylate cyclase bin=RBG_19FT_COMBO_GAL15_69_19 species=Desulfitobacterium dichloroeliminans genus=Desulfitobacterium taxon_order=Clostridiales taxon_class=Clostridia phylum=Firmicutes tax=RBG_19FT_COMBO_GAL15_69_19 organism_group=GAL15 organism_desc=Curation Candidate
hypothetical protein
Tax=BJP_IG2102_Clostridiales_34_350
PLM1_100_b1_sep16_scaffold_2013_8
RBG_16_Actinobacteria_67_10_curated, Acidimicrobiia, Actinobacteria, Bacteria

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6480..7568
-----------------
DNA (1089bp)
protein (363aa)
Ribonuclease Z Tax=Conexibacter woesei (strain DSM 14684 / JCM 11494 / NBRC 100937 / ID131577) RepID=D3FE00_CONWI
ribonuclease Z
Tax=RBG_16_Actinobacteria_67_10_curated
PLM1_100_b1_sep16_scaffold_2013_9
RBG_16_Actinobacteria_68_12_curated, Actinobacteria, Bacteria

Not on your lists

comp(7676..8032)
-----------------
DNA (357bp)
protein (119aa)
Putative DsrE/DsrF-like family protein Tax=Deinococcus deserti (strain VCD115 / DSM 17065 / LMG 22923) RepID=C1D208_DEIDV
DsrE/DsrF-like family protein
Tax=RBG_16_Actinobacteria_68_12_curated
PLM1_100_b1_sep16_scaffold_2013_10
RBG_16_Actinobacteria_67_10_curated, Acidimicrobiia, Actinobacteria, Bacteria

Not on your lists

8131..8700
-----------------
DNA (570bp)
protein (190aa)
uracil phosphoribosyltransferase (EC:2.4.2.9)
Bifunctional protein PyrR Tax=Patulibacter medicamentivorans RepID=H0EA30_9ACTN
Tax=RBG_16_Actinobacteria_67_10_curated
PLM1_100_b1_sep16_scaffold_2013_11
unknown

Not on your lists

comp(8908..9168)
-----------------
DNA (261bp)
protein (87aa)

This feature has no annotations

PLM1_100_b1_sep16_scaffold_2013_12
Conexibacter woesei, Conexibacter, Solirubrobacterales, Thermoleophilia, Actinobacteria, Bacteria

Not on your lists

9199..9714
-----------------
DNA (516bp)
protein (172aa)
Aspartate carbamoyltransferase {ECO:0000256|HAMAP-Rule:MF_00001}; EC=2.1.3.2 {ECO:0000256|HAMAP-Rule:MF_00001};; Aspartate transcarbamylase {ECO:0000256|HAMAP-Rule:MF_00001}; species="Bacteria; Actinobacteria; Thermoleophilia; Solirubrobacterales; Conexibacteraceae; Conexibacter.;" source="Conexibacter woesei (strain DSM 14684 / JCM 11494 / NBRC 100937 /; ID131577).;"
Aspartate carbamoyltransferase Tax=Conexibacter woesei (strain DSM 14684 / JCM 11494 / NBRC 100937 / ID131577) RepID=D3FE03_CONWI
aspartate carbamoyltransferase
PLM1_100_b1_sep16_scaffold_2013_13
RBG_16_Actinobacteria_67_10_curated, Acidimicrobiia, Actinobacteria, Bacteria

Not on your lists

9715..11004
-----------------
DNA (1290bp)
protein (430aa)
dihydroorotase Tax=Patulibacter americanus RepID=UPI0003B6F6E4
dihydroorotase
Tax=RBG_16_Actinobacteria_67_10_curated
PLM1_100_b1_sep16_scaffold_2013_14
RBG_16_Actinobacteria_67_10_curated, Acidimicrobiia, Actinobacteria, Bacteria

Not on your lists

11001..12044
-----------------
DNA (1044bp)
protein (348aa)
carbamoyl-phosphate synthase small subunit (EC:6.3.5.5)
Carbamoyl-phosphate synthase small chain Tax=Conexibacter woesei (strain DSM 14684 / JCM 11494 / NBRC 100937 / ID131577) RepID=D3FE06_CONWI
Tax=RBG_16_Actinobacteria_67_10_curated
PLM1_100_b1_sep16_scaffold_2013_15
Burkholderiales bacterium GJ-E10, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

12028..15111
-----------------
DNA (3084bp)
protein (1028aa)
Carbamoyl-phosphate synthase (glutamine-hydrolyzing) {ECO:0000256|SAAS:SAAS00086116}; EC=6.3.5.5 {ECO:0000256|SAAS:SAAS00086116};; species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales.;" source="Burkholderiales bacterium GJ-E10.;"
Carbamoyl-phosphate synthase large chain Tax=Rubrobacter xylanophilus (strain DSM 9941 / NBRC 16129) RepID=CARB_RUBXD
carbamoyl phosphate synthase large subunit
PLM1_100_b1_sep16_scaffold_2013_16
Conexibacter woesei, Conexibacter, Solirubrobacterales, Thermoleophilia, Actinobacteria, Bacteria

Not on your lists

15089..15754
-----------------
DNA (666bp)
protein (222aa)
Dihydroorotate dehydrogenase, electron transfer subunit, iron-sulphur cluster binding domain protein Tax=Conexibacter woesei (strain DSM 14684 / JCM 11494 / NBRC 100937 / ID131577) RepID=D3FE08_CONWI
dihydroorotate dehydrogenase, electron transfer subunit, iron-sulphur cluster binding domain protein
Dihydroorotate dehydrogenase, electron transfer subunit, iron-sulphur cluster binding domain protein {ECO:0000313|EMBL:ADB51624.1}; species="Bacteria; Actinobacteria; Thermoleophilia; Solirubrobacterales; Conexibacteraceae; Conexibacter.;" source="Conexibacter woesei (strain DSM 14684 / JCM 11494 / NBRC 100937 /; ID131577).;"
PLM1_100_b1_sep16_scaffold_2013_17
RBG_16_Actinobacteria_67_10_curated, Acidimicrobiia, Actinobacteria, Bacteria

Not on your lists

15754..16659
-----------------
DNA (906bp)
protein (302aa)
Dihydroorotate dehydrogenase B (NAD(+)), catalytic subunit Tax=Desulforudis audaxviator (strain MP104C) RepID=PYRDB_DESAP
dihydroorotate dehydrogenase family protein
Tax=RBG_16_Actinobacteria_67_10_curated
PLM1_100_b1_sep16_scaffold_2013_18
unknown

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comp(16716..16892)
-----------------
DNA (177bp)
protein (59aa)

This feature has no annotations

PLM1_100_b1_sep16_scaffold_2013_19
RBG_16_Actinobacteria_67_10_curated, Acidimicrobiia, Actinobacteria, Bacteria

Not on your lists

17004..17648
-----------------
DNA (645bp)
protein (215aa)
guanylate kinase (EC:2.7.4.8)
Guanylate kinase Tax=Conexibacter woesei (strain DSM 14684 / JCM 11494 / NBRC 100937 / ID131577) RepID=D3FE11_CONWI
Tax=RBG_16_Actinobacteria_67_10_curated
PLM1_100_b1_sep16_scaffold_2013_20
RBG_16_Actinobacteria_67_10_curated, Acidimicrobiia, Actinobacteria, Bacteria

Not on your lists

17645..17875
-----------------
DNA (231bp)
protein (77aa)
DNA-directed RNA polymerase subunit omega Tax=Conexibacter woesei (strain DSM 14684 / JCM 11494 / NBRC 100937 / ID131577) RepID=D3FE13_CONWI
DNA-directed RNA polymerase subunit omega
Tax=RBG_16_Actinobacteria_67_10_curated
PLM1_100_b1_sep16_scaffold_2013_21
RBG_16_Acidobacteria_64_8_curated, Acidobacteria, Bacteria

Not on your lists

17889..18902
-----------------
DNA (1014bp)
protein (338aa)
phosphopantothenoylcysteine decarboxylase/phosphopantothenate/cysteine ligase (EC:6.3.2.5)
Phosphopantothenoylcysteine decarboxylase Tax=Patulibacter medicamentivorans RepID=H0EA21_9ACTN
Tax=RBG_16_Acidobacteria_64_8_curated
Displaying 21 items

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