ggKbase home page

PLM1_100_b1_sep16_scaffold_3999

Search features with annotation key words

Displaying 13 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
PLM1_100_b1_sep16_scaffold_3999_1
R_PER_ii_51_35, PER-ii, Bacteria

Not on your lists

1..1275
-----------------
DNA (1275bp)
protein (425aa)
Putative internalin Tax=Myxococcus sp. (contaminant ex DSM 436) RepID=U2SP33_9DELT
OmpA domain-containing protein
Tax=RIFCSPHIGHO2_01_FULL_PER_ii_51_35_curated
PLM1_100_b1_sep16_scaffold_3999_2
Desulfotomaculum reducens, Desulfotomaculum, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(1283..1717)
-----------------
DNA (435bp)
protein (145aa)
Histidine kinase {ECO:0000256|SAAS:SAAS00155656}; EC=2.7.13.3 {ECO:0000256|SAAS:SAAS00155656};; species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptococcaceae; Desulfotomaculum.;" source="Desulfotomaculum reducens (strain MI-1).;"
GAF sensor hybrid histidine kinase Tax=Desulfotomaculum reducens (strain MI-1) RepID=A4J4T1_DESRM
multi-sensor hybrid histidine kinase
PLM1_100_b1_sep16_scaffold_3999_3
RBG_16_Gamma2_64_11_curated, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

2043..3422
-----------------
DNA (1380bp)
protein (460aa)
Tax=RBG_16_Gamma2_64_11_curated
PLM1_100_b1_sep16_scaffold_3999_4
GWC2_Chloroflexi_49_37_curated, Chloroflexi, Bacteria

Not on your lists

comp(3575..4471)
-----------------
DNA (897bp)
protein (299aa)
serine protease precursor bin=GWC2_Chloroflexi_49_37 species=unidentified genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWC2_Chloroflexi_49_37 organism_group=Chloroflexi organism_desc=Good +; Candidate for curation
putative subtilase-family protease
Tax=GWC2_Chloroflexi_49_37_curated
PLM1_100_b1_sep16_scaffold_3999_5
RBG_16_Actinobacteria_68_12_curated, Actinobacteria, Bacteria

Not on your lists

comp(4614..5192)
-----------------
DNA (579bp)
protein (193aa)
Membrane protein Tax=Streptomyces griseoflavus Tu4000 RepID=D9XQC6_9ACTO
putative sulfonate transporter
Tax=RBG_16_Actinobacteria_68_12_curated
PLM1_100_b1_sep16_scaffold_3999_6
Conexibacter woesei, Conexibacter, Solirubrobacterales, Thermoleophilia, Actinobacteria, Bacteria

Not on your lists

comp(5231..5809)
-----------------
DNA (579bp)
protein (193aa)
Cob(I)alamin adenosyltransferase PduO Tax=Patulibacter medicamentivorans RepID=H0E2Z7_9ACTN
ATP/cobalamin adenosyltransferase
ATP/cobalamin adenosyltransferase {ECO:0000313|EMBL:ADB52221.1}; species="Bacteria; Actinobacteria; Thermoleophilia; Solirubrobacterales; Conexibacteraceae; Conexibacter.;" source="Conexibacter woesei (strain DSM 14684 / JCM 11494 / NBRC 100937 /; ID131577).;"
PLM1_100_b1_sep16_scaffold_3999_7
unknown

Not on your lists

comp(5844..6563)
-----------------
DNA (720bp)
protein (240aa)

This feature has no annotations

PLM1_100_b1_sep16_scaffold_3999_8
RBG_16_Actinobacteria_68_12_curated, Actinobacteria, Bacteria

Not on your lists

comp(6625..7461)
-----------------
DNA (837bp)
protein (279aa)
hbd; 3-hydroxybutyryl-CoA dehydrogenase (EC:1.1.1.157)
3-hydroxybutyryl-CoA dehydrogenase Tax=Alicyclobacillus pohliae RepID=UPI0003823549
Tax=RBG_16_Actinobacteria_68_12_curated
PLM1_100_b1_sep16_scaffold_3999_9

Not on your lists

7515..8756
-----------------
DNA (1242bp)
protein (414aa)
Surface antigen-like protein (Fragment) Tax=mine drainage metagenome RepID=T0ZIY9_9ZZZZ
Surface antigen-like protein {ECO:0000313|EMBL:EQD48301.1}; Flags: Fragment;; species="unclassified sequences; metagenomes; ecological metagenomes.;" source="mine drainage metagenome.;"
PLM1_100_b1_sep16_scaffold_3999_10
unknown

Not on your lists

8802..9125
-----------------
DNA (324bp)
protein (108aa)

This feature has no annotations

PLM1_100_b1_sep16_scaffold_3999_11
RBG_16_Actinobacteria_68_12_curated, Actinobacteria, Bacteria

Not on your lists

comp(9111..10262)
-----------------
DNA (1152bp)
protein (384aa)
acetyl-CoA acetyltransferase (EC:2.3.1.9)
Acetyl-CoA acetyltransferase Tax=Conexibacter woesei (strain DSM 14684 / JCM 11494 / NBRC 100937 / ID131577) RepID=D3F961_CONWI
Tax=RBG_16_Actinobacteria_68_12_curated
PLM1_100_b1_sep16_scaffold_3999_12
RBG_16_Actinobacteria_67_10_curated, Acidimicrobiia, Actinobacteria, Bacteria

Not on your lists

comp(10278..11366)
-----------------
DNA (1089bp)
protein (363aa)
yhfN; Zn-dependent protease with chaperone function (EC:3.4.24.84)
hypothetical protein Tax=Nocardioides sp. Iso805N RepID=UPI0003653ADE
Tax=RBG_16_Actinobacteria_67_10_curated
PLM1_100_b1_sep16_scaffold_3999_13
RBG_16_Actinobacteria_68_12_curated, Actinobacteria, Bacteria

Not on your lists

comp(11486..11728)
-----------------
DNA (243bp)
protein (81aa)
hypothetical protein Tax=Patulibacter americanus RepID=UPI0003B56B2D
Tax=RBG_16_Actinobacteria_68_12_curated
Displaying 13 items

View Taxonomy