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PLM1_100_b1_sep16_scaffold_1313

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Displaying 18 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
PLM1_100_b1_sep16_scaffold_1313_1
unknown

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comp(2..73)
-----------------
DNA (72bp)
protein (24aa)

This feature has no annotations

PLM1_100_b1_sep16_scaffold_1313_2
Ochrobactrum anthropi, Ochrobactrum, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(80..1738)
-----------------
DNA (1659bp)
protein (553aa)
Dipeptide transporter DppA homolog Tax=Ochrobactrum anthropi RepID=Q9LCD3_OCHAN
Dipeptide transporter DppA homolog {ECO:0000313|EMBL:BAA94699.1}; species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Brucellaceae; Ochrobactrum.;" source="Ochrobactrum anthropi.;"
extracellular solute-binding protein family 5
PLM1_100_b1_sep16_scaffold_1313_3
Brenneria sp. EniD312, Brenneria, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

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comp(1763..2251)
-----------------
DNA (489bp)
protein (163aa)
hypothetical protein Tax=Marinobacterium rhizophilum RepID=UPI000381DF5B
Cupin 2 conserved barrel domain protein {ECO:0000313|EMBL:EHD23678.1}; species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Brenneria.;" source="Brenneria sp. EniD312.;"
Putative Cro/CI family transcriptional regulator
PLM1_100_b1_sep16_scaffold_1313_4
unknown

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2471..2776
-----------------
DNA (306bp)
protein (102aa)

This feature has no annotations

PLM1_100_b1_sep16_scaffold_1313_5
Asticcacaulis sp. YBE204, Asticcacaulis, Caulobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

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2788..3597
-----------------
DNA (810bp)
protein (270aa)
Uncharacterized protein Tax=Asticcacaulis sp. YBE204 RepID=V4NA49_9CAUL
Uncharacterized protein {ECO:0000313|EMBL:ESQ78792.1}; species="Bacteria; Proteobacteria; Alphaproteobacteria; Caulobacterales; Caulobacteraceae; Asticcacaulis.;" source="Asticcacaulis sp. YBE204.;"
methylase
PLM1_100_b1_sep16_scaffold_1313_6
unknown

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3669..4193
-----------------
DNA (525bp)
protein (175aa)

This feature has no annotations

PLM1_100_b1_sep16_scaffold_1313_7
Rhodanobacter thiooxydans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

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comp(4190..5017)
-----------------
DNA (828bp)
protein (276aa)
AraC family transcriptional regulator Tax=Rhodanobacter thiooxydans LCS2 RepID=I4WTD8_9GAMM
AraC family transcriptional regulator {ECO:0000313|EMBL:EIM02730.1}; species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter thiooxydans LCS2.;"
Helix-turn-helix, AraC domain-containing protein
PLM1_100_b1_sep16_scaffold_1313_8
unknown

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comp(5042..5275)
-----------------
DNA (234bp)
protein (78aa)

This feature has no annotations

PLM1_100_b1_sep16_scaffold_1313_9
RBG_16_Actinobacteria_68_12_curated, Actinobacteria, Bacteria

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comp(5286..5525)
-----------------
DNA (240bp)
protein (80aa)
Tax=RBG_16_Actinobacteria_68_12_curated
PLM1_100_b1_sep16_scaffold_1313_10
Roseiflexus sp. RS-1, Roseiflexus, Chloroflexales, Chloroflexia, Chloroflexi, Bacteria

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comp(5552..6409)
-----------------
DNA (858bp)
protein (286aa)
ferrochelatase (EC:4.99.1.1)
Ferrochelatase {ECO:0000256|HAMAP-Rule:MF_00323, ECO:0000256|RuleBase:RU000607}; EC=4.99.1.1 {ECO:0000256|HAMAP-Rule:MF_00323, ECO:0000256|RuleBase:RU000607};; Heme synthase {ECO:0000256|HAMAP-Rule:MF_00323}; Protoheme ferro-lyase {ECO:0000256|HAMAP-Rule:MF_00323}; species="Bacteria; Chloroflexi; Chloroflexia; Chloroflexales; Roseiflexineae; Roseiflexaceae; Roseiflexus.;" source="Roseiflexus sp. (strain RS-1).;"
Ferrochelatase Tax=Roseiflexus sp. (strain RS-1) RepID=A5UU36_ROSS1
PLM1_100_b1_sep16_scaffold_1313_11
Thermobaculum terrenum, Thermobaculum, Bacteria

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comp(6427..7458)
-----------------
DNA (1032bp)
protein (344aa)
uroporphyrinogen decarboxylase (EC:4.1.1.37)
Uroporphyrinogen decarboxylase {ECO:0000256|HAMAP-Rule:MF_00218, ECO:0000256|RuleBase:RU000554}; Short=UPD {ECO:0000256|HAMAP-Rule:MF_00218};; Short=URO-D {ECO:0000256|HAMAP-Rule:MF_00218};; EC=4.1.1.37 {ECO:0000256|HAMAP-Rule:MF_00218, ECO:0000256|RuleBase:RU000554};; species="Bacteria; Thermobaculum.;" source="Thermobaculum terrenum (strain ATCC BAA-798 / YNP1).;"
Uroporphyrinogen decarboxylase Tax=Thermobaculum terrenum (strain ATCC BAA-798 / YNP1) RepID=D1CIA8_THET1
PLM1_100_b1_sep16_scaffold_1313_12
GWA2_OP11_47_9, Gottesmanbacteria, Microgenomates, Bacteria

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comp(7487..8017)
-----------------
DNA (531bp)
protein (177aa)
Cell envelope-related transcriptional attenuator {ECO:0000313|EMBL:KKU88317.1}; species="Bacteria; Microgenomates.;" source="Microgenomates (Gottesmanbacteria) bacterium GW2011_GWA2_47_9.;"
cell envelope-related transcriptional attenuator
PLM1_100_b1_sep16_scaffold_1313_13
RBG_16_Actinobacteria_68_12_curated, Actinobacteria, Bacteria

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comp(8026..8964)
-----------------
DNA (939bp)
protein (313aa)
UDP-glucose 4-epimerase Tax=Patulibacter medicamentivorans RepID=H0E2A2_9ACTN
NAD-dependent epimerase/dehydratase
Tax=RBG_16_Actinobacteria_68_12_curated
PLM1_100_b1_sep16_scaffold_1313_14
Tetrasphaera australiensis, Tetrasphaera, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

8990..9586
-----------------
DNA (597bp)
protein (199aa)
Thymidylate kinase {ECO:0000256|HAMAP-Rule:MF_00165}; EC=2.7.4.9 {ECO:0000256|HAMAP-Rule:MF_00165};; dTMP kinase {ECO:0000256|HAMAP-Rule:MF_00165}; species="Bacteria; Actinobacteria; Micrococcales; Intrasporangiaceae; Tetrasphaera.;" source="Tetrasphaera australiensis Ben110.;"
Thymidylate kinase Tax=Actinobaculum sp. oral taxon 183 str. F0552 RepID=U1RGZ2_9ACTO
thymidylate kinase
PLM1_100_b1_sep16_scaffold_1313_15
Rubrobacter xylanophilus, Rubrobacter, Rubrobacterales, Rubrobacteria, Actinobacteria, Bacteria

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9561..10634
-----------------
DNA (1074bp)
protein (358aa)
DNA polymerase III subunit delta' (EC:2.7.7.7)
DNA polymerase III, delta prime subunit {ECO:0000313|EMBL:ABG04908.1}; EC=2.7.7.7 {ECO:0000313|EMBL:ABG04908.1};; species="Bacteria; Actinobacteria; Rubrobacteria; Rubrobacterales; Rubrobacterineae; Rubrobacteraceae; Rubrobacter.;" source="Rubrobacter xylanophilus (strain DSM 9941 / NBRC 16129).;"
DNA polymerase III, delta prime subunit Tax=Rubrobacter xylanophilus (strain DSM 9941 / NBRC 16129) RepID=Q1AUM0_RUBXD
PLM1_100_b1_sep16_scaffold_1313_16
Eubacterium sp. CAG:581, Eubacterium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

10647..11447
-----------------
DNA (801bp)
protein (267aa)
Uncharacterized homolog of PSP1 Tax=Eubacterium sp. CAG:581 RepID=R7NIW4_9FIRM
Uncharacterized homolog of PSP1 {ECO:0000313|EMBL:CDF13384.1}; species="Bacteria; Firmicutes; Clostridia; Clostridiales; Eubacteriaceae; Eubacterium; environmental samples.;" source="Eubacterium sp. CAG:581.;"
PSP1 domain protein
PLM1_100_b1_sep16_scaffold_1313_17
RBG_16_Actinobacteria_68_12_curated, Actinobacteria, Bacteria

Not on your lists

11502..12410
-----------------
DNA (909bp)
protein (303aa)
Uncharacterized protein Tax=Ruminococcaceae bacterium D16 RepID=F4XFK4_9FIRM
ECF subfamily RNA polymerase sigma-24 factor
Tax=RBG_16_Actinobacteria_68_12_curated
PLM1_100_b1_sep16_scaffold_1313_trna_1
unknown

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12425..12497
-----------------
DNA (73bp)
transferRNA Thr
Displaying 18 items

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