ggKbase home page

PLM1_100_b1_sep16_scaffold_1481

Search features with annotation key words

Displaying 16 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
PLM1_100_b1_sep16_scaffold_1481_1
RLO_Deltaproteobacteria_60_19, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(3..98)
-----------------
DNA (96bp)
protein (32aa)
Periplasmic binding protein Tax=Patulibacter medicamentivorans RepID=H0E8Z7_9ACTN
Tax=RIFCSPLOWO2_12_FULL_Deltaproteobacteria_60_19_curated
PLM1_100_b1_sep16_scaffold_1481_trna_1
unknown

Not on your lists

comp(311..383)
-----------------
DNA (73bp)
transferRNA Arg
PLM1_100_b1_sep16_scaffold_1481_2
RBG_16_Actinobacteria_68_12_curated, Actinobacteria, Bacteria

Not on your lists

comp(374..1222)
-----------------
DNA (849bp)
protein (283aa)
folate-binding protein Tax=Patulibacter americanus RepID=UPI0003B6716F
glycine cleavage T protein
Tax=RBG_16_Actinobacteria_68_12_curated
PLM1_100_b1_sep16_scaffold_1481_3
RBG_16_Actinobacteria_68_12_curated, Actinobacteria, Bacteria

Not on your lists

1278..2225
-----------------
DNA (948bp)
protein (316aa)
Tax=RBG_16_Actinobacteria_68_12_curated
PLM1_100_b1_sep16_scaffold_1481_4
RBG_16_Actinobacteria_68_12_curated, Actinobacteria, Bacteria

Not on your lists

comp(2316..3938)
-----------------
DNA (1623bp)
protein (541aa)
60 kDa chaperonin Tax=Conexibacter woesei (strain DSM 14684 / JCM 11494 / NBRC 100937 / ID131577) RepID=D3F2T2_CONWI
chaperonin GroEL
Tax=RBG_16_Actinobacteria_68_12_curated
PLM1_100_b1_sep16_scaffold_1481_5
RBG_16_Actinobacteria_68_12_curated, Actinobacteria, Bacteria

Not on your lists

comp(3972..4313)
-----------------
DNA (342bp)
protein (114aa)
10 kDa chaperonin Tax=Conexibacter woesei (strain DSM 14684 / JCM 11494 / NBRC 100937 / ID131577) RepID=D3F2T1_CONWI
chaperonin Cpn10
Tax=RBG_16_Actinobacteria_68_12_curated
PLM1_100_b1_sep16_scaffold_1481_6
Rubrobacter radiotolerans, Rubrobacter, Rubrobacterales, Rubrobacteria, Actinobacteria, Bacteria

Not on your lists

comp(4412..5587)
-----------------
DNA (1176bp)
protein (392aa)
Putative permease (Major facilitator superfamily) Tax=Uncultured methanogenic archaeon RC-I RepID=Q0W2N8_UNCMA
Arabinose efflux permease
Arabinose efflux permease {ECO:0000313|EMBL:AHY47172.1}; species="Bacteria; Actinobacteria; Rubrobacteria; Rubrobacterales; Rubrobacterineae; Rubrobacteraceae; Rubrobacter.;" source="Rubrobacter radiotolerans.;"
PLM1_100_b1_sep16_scaffold_1481_7
Hyalangium minutum, Hyalangium, Myxococcales, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

5588..6025
-----------------
DNA (438bp)
protein (146aa)
NUDIX hydrolase Tax=Koribacter versatilis (strain Ellin345) RepID=Q1INT1_KORVE
Uncharacterized protein {ECO:0000313|EMBL:KFE67117.1}; species="Bacteria; Proteobacteria; Deltaproteobacteria; Myxococcales; Cystobacterineae; Cystobacteraceae; Hyalangium.;" source="Hyalangium minutum.;"
NUDIX hydrolase
PLM1_100_b1_sep16_scaffold_1481_8
RBG_16_Actinobacteria_68_12_curated, Actinobacteria, Bacteria

Not on your lists

6003..6434
-----------------
DNA (432bp)
protein (144aa)
hypothetical protein Tax=Patulibacter americanus RepID=UPI0003B4F1E3
hypothetical protein
Tax=RBG_16_Actinobacteria_68_12_curated
PLM1_100_b1_sep16_scaffold_1481_9
CSP1_5_NC10, NC10, Bacteria

Not on your lists

6716..7762
-----------------
DNA (1047bp)
protein (349aa)
pdhA; pyruvate dehydrogenase (Lipoamide) E1 component alpha chain (EC:1.2.4.1) bin=bin3_NC10 species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=bin3_NC10 organism_group=NC10
pdhA; pyruvate dehydrogenase (Lipoamide) E1 component alpha chain (EC:1.2.4.1)
Tax=CSP1_5_NC10
PLM1_100_b1_sep16_scaffold_1481_10
R_NC10_66_22, NC10, Bacteria

Not on your lists

7764..8738
-----------------
DNA (975bp)
protein (325aa)
branched-chain alpha-keto acid dehydrogenase E1 component (EC:1.2.4.4)
Branched-chain alpha-keto acid dehydrogenase E1 component Tax=Solibacter usitatus (strain Ellin6076) RepID=Q02C51_SOLUE
Tax=RIFCSPLOWO2_02_FULL_NC10_66_22_curated
PLM1_100_b1_sep16_scaffold_1481_11
Thermoanaerobaculum aquaticum, Thermoanaerobaculum, Acidobacteria, Bacteria

Not on your lists

8744..10111
-----------------
DNA (1368bp)
protein (456aa)
pyruvate/2-oxoglutarate dehydrogenase complex, dihydrolipoamide acyltransferase (E2) component,-like enzyme (EC:2.3.1.61)
Pyruvate/2-oxoglutarate dehydrogenase complex, dihydrolipoamide acyltransferase (E2) component,-like enzyme Tax=Chloracidobacterium thermophilum (strain B) RepID=G2LH10_CHLTF
Uncharacterized protein {ECO:0000313|EMBL:KDA53042.1}; species="Bacteria; Acidobacteria; Acidobacteria subdivision 23; Thermoanaerobaculum.;" source="Thermoanaerobaculum aquaticum.;"
PLM1_100_b1_sep16_scaffold_1481_12
CG_Deferri_01, Deferribacterales, Deferribacteres, Deferribacteres, Bacteria

Not on your lists

10120..10872
-----------------
DNA (753bp)
protein (251aa)
lipB; lipoate biosynthesis protein B; Lipoate-protein ligase B (EC:2.3.1.-)
Octanoyltransferase Tax=Candidatus Methylomirabilis oxyfera RepID=D5MFX3_9BACT
Tax=CG_Deferri_01
PLM1_100_b1_sep16_scaffold_1481_13
RBG_16_Actinobacteria_68_12_curated, Actinobacteria, Bacteria

Not on your lists

10960..11859
-----------------
DNA (900bp)
protein (300aa)
lipoyl synthase Tax=Laceyella sacchari RepID=UPI0003B2E391
Lipoyl synthase
Tax=RBG_16_Actinobacteria_68_12_curated
PLM1_100_b1_sep16_scaffold_1481_14
unknown

Not on your lists

12078..12581
-----------------
DNA (504bp)
protein (168aa)

This feature has no annotations

PLM1_100_b1_sep16_scaffold_1481_15
unknown

Not on your lists

comp(13003..13113)
-----------------
DNA (111bp)
protein (37aa)

This feature has no annotations

Displaying 16 items

View Taxonomy