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PLM1_100_b1_sep16_scaffold_5020_20

Organism: PLM1_100_b1_sep16_Actinobacteria_69_15

near complete RP 47 / 55 MC: 3 BSCG 49 / 51 MC: 2 ASCG 12 / 38
Location: comp(12521..12973)

Top 3 Functional Annotations

Value Algorithm Source
ECF subfamily RNA polymerase sigma-24 factor bin=RBG9 species=RBG9 genus=RBG9 taxon_order=RBG9 taxon_class=RBG9 phylum=Chloroflexi tax=RBG9 organism_group=Chloroflexi similarity UNIREF
DB: UNIREF100
  • Identity: 52.2
  • Coverage: 90.0
  • Bit_score: 97
  • Evalue 8.80e-18
ECF subfamily RNA polymerase sigma-24 subunit similarity KEGG
DB: KEGG
  • Identity: 52.2
  • Coverage: 92.0
  • Bit_score: 85
  • Evalue 7.50e-15
Tax=RBG_16_RIF_CHLX_72_14_curated similarity UNIPROT
DB: UniProtKB
  • Identity: 62.6
  • Coverage: 139.0
  • Bit_score: 119
  • Evalue 3.90e-24

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Taxonomy

RBG_16_RIF_CHLX_72_14_curated → RIF-CHLX → Bacteria

Sequences

DNA sequence
Length: 453
GTGGAGGGCCGTCCACTGGAAGAAACGGAGCTCGTCGAGCGGGCGAAAAAGGGCGATCAGGGCGCCTATGGGAGGCTCGTGCAGGCACACCAGCACATCGCGTTCCGGACCGCATTTCTCATCACCAGGGACGCGGCCGACGCCGAGGATGCGGCCCAGGACGGGTTCGTGAAGGCCTACTACGCCCTCAGCCGCTTCCGCCGCGGGGCTCCCTTTCGACCCTGGCTCCTCCAGATCGTCGCCAACGAAGCCCGCAACCGCCGCAGGTCGGCGGGACGGCGCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCGGTACTTCCTCGAGCTCTCCGAGGAGGAGACGGCCGAGGTGCTCGGCTGGCGGCGCGGGACGGTCAAGTCGAGGCTCTCGCGGGCGCTCGAGCGCCTGCGGGCGGAGGTGCAGGCGTATGCCTGA
PROTEIN sequence
Length: 151
VEGRPLEETELVERAKKGDQGAYGRLVQAHQHIAFRTAFLITRDAADAEDAAQDGFVKAYYALSRFRRGAPFRPWLLQIVANEARNRRRSAGRRXXXXXXXXXXXXXXXRYFLELSEEETAEVLGWRRGTVKSRLSRALERLRAEVQAYA*